RchiOBHm_Chr2g0134611

dnaJ homolog subfamily A member 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001801
Physical Location & Seq
Forward (+)
51748112 .. 51752552
4441 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50561

Sequence Viewer

Length: 279 bp
ATGAGAACAGAGCAGACACCTATTGGCTTGTTTTCTCAGGAGAAACAGTTTCTGCATGTCTGGATTGTGGTGGAGATGGTGAAGGTATTTCTGAATACTGTCGGAAGTGCTGGAGAAGGACGTGTTCATGTTAAGATAAGTATCAAAGTGCAAATTCCTCCTCGTGTTAGCAGGGGAAGTATTCTTAGAGTTGCTGGAGAGGGAGGTGCTGGACCGAGAGGGGGTCCTCCTGGGGATCTTTATGTATATCTTGATGTTGAAGAAGTAGAAGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

92

Amino Acids

9.98

Weight (kDa)

6.73

Isoelectric Point (pI)

20.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 41 - 88 1.7e-09 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 2 cut(s) 153, 273
AfiI CCNNNNNNNGG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 1 cut(s) 260
AjiI CACGTC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 229
AlwI GGATC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 52
ApoI RAATTY 2 cut(s) 153, 273
AspS9I GGNCC 2 cut(s) 212, 224
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 2 cut(s) 212, 224
BauI CACGAG 1 cut(s) 162
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 212, 224
BmgBI CACGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 212, 224
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 231
BpmI CTGGAG 2 cut(s) 132, 216
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 230
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 221
Bsp143I GATC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 1 cut(s) 235
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 48, 100
BstDEI CTNAG 2 cut(s) 36, 185
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtrI CACGTC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 212, 224
CviAII CATG 2 cut(s) 56, 128
CviJI RGCY 1 cut(s) 27
CviKI_1 RGCY 1 cut(s) 27
DdeI CTNAG 2 cut(s) 36, 185
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 212, 224
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 2 cut(s) 59, 131
FaiI YATR 4 cut(s) 57, 129, 243, 247
FatI CATG 2 cut(s) 55, 127
GsuI CTGGAG 2 cut(s) 132, 216
Hin1II CATG 2 cut(s) 59, 131
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 93, 104
Hpy188III TCNNGA 3 cut(s) 38, 61, 251
HpyAV CCTTC 3 cut(s) 76, 110, 263
HpyCH4III ACNGT 2 cut(s) 48, 100
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 55, 151
HpyF3I CTNAG 2 cut(s) 36, 185
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 2 cut(s) 59, 131
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 8 cut(s) 23, 46, 96, 157, 180, 195, 216, 243
MaeII ACGT 1 cut(s) 121
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 1 cut(s) 272
MflI RGATCY 1 cut(s) 235
MluCI AATT 2 cut(s) 153, 273
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 6 cut(s) 168, 171, 193, 197, 212, 237
MseI TTAA 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
NdeII GATC 1 cut(s) 235
NlaIII CATG 2 cut(s) 59, 131
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 2 cut(s) 212, 224
PspPPI RGGWCCY 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 235
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 2 cut(s) 212, 224
ScrFI CCNGG 1 cut(s) 231
SetI ASST 4 cut(s) 22, 87, 124, 208
SinI GGWCC 2 cut(s) 212, 224
Sse9I AATT 2 cut(s) 153, 273
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 48, 100
TaiI ACGT 1 cut(s) 124
TaqII GACCGA 1 cut(s) 229
TasI AATT 2 cut(s) 153, 273
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 212, 224
XapI RAATTY 2 cut(s) 153, 273
XceI RCATGY 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.