Rroxscaffold_2G00109870

Chaperone protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
34104364 .. 34111166
6803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109870.1

Sequence Viewer

Length: 273 bp
ATGAGAACAGAGCAGACACCTATTGGCTTGTTTTCTCAGGTTTCTGTATGTCTGGATTGTGGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAAGTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCCTCCTCGTGTTAGCAGGGGAAGTATTCTTAGAGTTGCTGGAGAGGGAGGTGCTGGACCGAGAGGGGGTCCTCCTGGGGATCTTTATGTATATCTTGATGTTGAACAAGTAGAAGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

9.55

Weight (kDa)

8.42

Isoelectric Point (pI)

24.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_CXXCXGXG PF00684 2 - 38 7.3e-07 DnaJ central domain
DnaJ_C PF01556 40 - 86 6.4e-10 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 1 cut(s) 254
AjiI CACGTC 1 cut(s) 116
AjnI CCWGG 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 104
AlwI GGATC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 206, 218
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 2 cut(s) 206, 218
BauI CACGAG 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 104
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 2 cut(s) 206, 218
BmgBI CACGTC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 206, 218
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 225
BpmI CTGGAG 2 cut(s) 126, 210
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 229
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 36, 179
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtrI CACGTC 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 206, 218
CviJI RGCY 1 cut(s) 27
CviKI_1 RGCY 1 cut(s) 27
DdeI CTNAG 2 cut(s) 36, 179
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 206, 218
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 223
FaiI YATR 3 cut(s) 49, 237, 241
GsuI CTGGAG 2 cut(s) 126, 210
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 85, 96
Hpy188III TCNNGA 3 cut(s) 53, 105, 245
HpyAV CCTTC 2 cut(s) 104, 257
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 36, 179
HpySE526I ACGT 1 cut(s) 115
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 8 cut(s) 23, 38, 90, 151, 174, 189, 210, 237
MaeII ACGT 1 cut(s) 115
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 6 cut(s) 162, 165, 187, 191, 206, 231
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
NdeII GATC 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 206, 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 1 cut(s) 229
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 2 cut(s) 206, 218
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 104
SetI ASST 4 cut(s) 22, 42, 118, 202
SinI GGWCC 2 cut(s) 206, 218
Sse9I AATT 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 118
TaqII GACCGA 1 cut(s) 223
TasI AATT 1 cut(s) 267
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
VpaK11BI GGWCC 2 cut(s) 206, 218
XapI RAATTY 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.