Rh2CG355100

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001801
Physical Location & Seq
Forward (+)
48062556 .. 48069546
6991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG355100.1

Sequence Viewer

Length: 543 bp
ATGCATATTATATGTTCAAAACTTATACAATTTAGTTTTGTGTTTGTGCAGACTAATCCTTTCGATTTATTTGAGACATTTTTTGGGTCAAGCAATCCTTTCCCTGATATGGATACTCGTTTTGAAACACGTCATTGCAGTACTGTTACTAAGGGTGAAGATATACGTTATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCCCATCTGGAAACATGTGAAGTTTGCGCTGGGAGTGGAGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCAGACACCTATTGGCTTGTTTTCTCAGGTTTCTGCATGTCTGGATTGTGGTGGAGATGGTGAAGTTATTTCTGAATACTTTCGGAAGTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCGTCCTCGTGTTAGCAGGGGAAGTATTCTTAGAGTTGCTGGAGAGGGAGGTGCTGGACCGAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

180

Amino Acids

19.81

Weight (kDa)

8.39

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 55 - 179 1.3e-07 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 82 - 146 2.2e-14 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 185, 218
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 2 cut(s) 109, 288
AflIII ACRYGT 3 cut(s) 128, 242, 439
AgsI TTSAA 3 cut(s) 18, 125, 224
AjiI CACGTC 2 cut(s) 131, 440
AloI GAACNNNNNNTCC 2 cut(s) 280, 312
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 185, 218
Asp700I GAANNNNTTC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 2 cut(s) 167, 407
AvaII GGWCC 1 cut(s) 530
BauI CACGAG 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 428
BccI CCATC 2 cut(s) 240, 386
BciVI GTATCC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 68
BfuI GTATCC 1 cut(s) 106
BmcAI AGTACT 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 530
BmgBI CACGTC 2 cut(s) 131, 440
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 1 cut(s) 280
BpmI CTGGAG 2 cut(s) 450, 534
BsaXI ACNNNNNCTCC 4 cut(s) 258, 280, 288, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 288
Bse3DI GCAATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 109, 288
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 183, 374
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 109, 288
BsmAI GTCTC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 428
BspCNI CTCAG 2 cut(s) 184, 373
BspLI GGNNCC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 133
BssSI CACGAG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 4 cut(s) 150, 192, 360, 503
BstHHI GCGC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 68
BstNSI RCATGY 2 cut(s) 246, 375
BsuI GTATCC 1 cut(s) 106
BtrI CACGTC 2 cut(s) 131, 440
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 530
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 243, 372
CviJI RGCY 3 cut(s) 197, 279, 351
CviKI_1 RGCY 3 cut(s) 197, 279, 351
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 4 cut(s) 150, 192, 360, 503
Eco47I GGWCC 1 cut(s) 530
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 246, 375
FalI AAGNNNNNCTT 2 cut(s) 82, 114
FatI CATG 2 cut(s) 242, 371
GlaI GCGC 1 cut(s) 256
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 2 cut(s) 450, 534
HhaI GCGC 1 cut(s) 257
Hin1II CATG 2 cut(s) 246, 375
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HphI GGTGA 2 cut(s) 167, 407
Hpy188I TCNGA 3 cut(s) 193, 409, 420
Hpy188III TCNNGA 3 cut(s) 236, 377, 429
HpyAV CCTTC 1 cut(s) 428
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 3 cut(s) 130, 166, 439
HpyCH4V TGCA 4 cut(s) 4, 49, 138, 371
HpyF3I CTNAG 4 cut(s) 150, 192, 360, 503
HpySE526I ACGT 3 cut(s) 130, 166, 439
Hsp92II CATG 2 cut(s) 246, 375
HspAI GCGC 1 cut(s) 255
LmnI GCTCC 2 cut(s) 266, 284
LpnPI CCDG 9 cut(s) 117, 221, 243, 347, 362, 414, 475, 498, 513
MaeII ACGT 3 cut(s) 130, 166, 439
MaeIII GTNAC 1 cut(s) 145
MboII GAAGA 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 3 cut(s) 29, 185, 218
MnlI CCTC 7 cut(s) 187, 282, 306, 489, 511, 515, 530
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 1 cut(s) 450
NlaIII CATG 2 cut(s) 246, 375
NlaIV GGNNCC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 246, 375
PciI ACATGT 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 414
PscI ACATGT 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 530
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 450
Sau96I GGNCC 1 cut(s) 530
ScaI AGTACT 1 cut(s) 142
SduI GDGCHC 1 cut(s) 428
SetI ASST 6 cut(s) 133, 169, 346, 366, 442, 526
SinI GGWCC 1 cut(s) 530
Sse9I AATT 3 cut(s) 29, 185, 218
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 3 cut(s) 133, 169, 442
TaqI TCGA 1 cut(s) 63
TasI AATT 3 cut(s) 29, 185, 218
TatI WGTACW 1 cut(s) 140
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 2 cut(s) 185, 218
XceI RCATGY 2 cut(s) 246, 375
XmnI GAANNNNTTC 1 cut(s) 414
ZrmI AGTACT 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.