RchiOBHm_Chr2g0134591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001801
Physical Location & Seq
Forward (+)
51745976 .. 51746522
547 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50560

Sequence Viewer

Length: 243 bp
ATGATGCTTGAATTCTGTTCTGCTTATTCTTGTTGTTGTCTGCGAAGGTCAAGAGCTCGGATGGGGAAAGACCCTTTGGCCTTCGTGGAAGAGAAGCAATGTGGAATGTGGATGGCAACTATTCTGGAGCCCATGAAGTTGTTTACAGACCCGGAAGAGGAGGAGTGGCTGTACTGGAGGAGGAGCTTGGGCGCTACAGAAGCTGCTGTTGCAGTTGCCGCCGCCATATTCTATCCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.21

Weight (kDa)

5.05

Isoelectric Point (pI)

80.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 219, 222
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 11
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 3 cut(s) 56, 186, 203
AluI AGCT 3 cut(s) 56, 186, 203
Alw21I GWGCWC 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 152
BanII GRGCYC 2 cut(s) 58, 132
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 55, 106
BcnI CCSGG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 195
BisI GCNGC 3 cut(s) 204, 219, 222
BlsI GCNGC 3 cut(s) 205, 220, 223
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 152
BpmI CTGGAG 2 cut(s) 146, 196
BpuMI CCSGG 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 104
BseGI GGATG 2 cut(s) 66, 117
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 4 cut(s) 173, 176, 193, 196
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 157
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 58, 132
BspACI CCGC 2 cut(s) 219, 222
BspANI GGCC 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 104
BsrI ACTGG 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 84, 150
BstF5I GGATG 2 cut(s) 66, 117
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstMWI GCNNNNNNNGC 3 cut(s) 200, 209, 218
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 2 cut(s) 66, 117
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 133
CviJI RGCY 6 cut(s) 56, 80, 130, 169, 186, 203
CviKI_1 RGCY 6 cut(s) 56, 80, 130, 169, 186, 203
CviQI GTAC 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 84, 150
EarI CTCTTC 2 cut(s) 84, 150
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 2 cut(s) 58, 132
Eco53kI GAGCTC 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 11
EcoT38I GRGCYC 2 cut(s) 58, 132
FaeI CATG 1 cut(s) 136
FaiI YATR 2 cut(s) 134, 227
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 204, 219, 222
FokI GGATG 2 cut(s) 73, 124
FriOI GRGCYC 2 cut(s) 58, 132
Fsp4HI GCNGC 3 cut(s) 204, 219, 222
GlaI GCGC 1 cut(s) 193
GluI GCNGC 3 cut(s) 204, 219, 222
GsuI CTGGAG 2 cut(s) 146, 196
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 194
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 2 cut(s) 51, 125
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 2 cut(s) 39, 91
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 209, 218
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 127, 183
LpnPI CCDG 3 cut(s) 110, 160, 165
Lsp1109I GCAGC 1 cut(s) 190
MboII GAAGA 2 cut(s) 101, 167
MhlI GDGCHC 2 cut(s) 58, 132
MluCI AATT 1 cut(s) 11
MnlI CCTC 4 cut(s) 151, 154, 171, 174
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 200, 209, 218
NciI CCSGG 1 cut(s) 152
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 129
PkrI GCNGC 3 cut(s) 205, 220, 223
Psp124BI GAGCTC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SacI GAGCTC 1 cut(s) 58
SatI GCNGC 3 cut(s) 204, 219, 222
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 58, 132
SetI ASST 4 cut(s) 50, 58, 188, 205
SfcI CTRYAG 1 cut(s) 195
Sse9I AATT 1 cut(s) 11
SsiI CCGC 2 cut(s) 219, 222
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 150
TasI AATT 1 cut(s) 11
TatI WGTACW 1 cut(s) 171
TauI GCSGC 2 cut(s) 221, 224
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 149
XapI RAATTY 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.