Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Forward (+)

38941209 .. 38942855

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0318700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCAACAGAAAATGGAGCGAGGGGATCCGGAACATCCTCAACAGCATCCTCAGTAAGAGTAGTAGCCTCAACCGCTGCAACCGCTGCATCCTCTCAGCGGCAAGATCAGTATCGGCAGGGACAGGAATGCCAACATACAAGTTCCTATACTAACAACAATGATCACCAATATCACTTGGGTTACTTTCCGTATGGCATTTCAGTGCTCGCTAAGATTGACTTGGAATGGGGGATGAAGTATAAGCCTCAAGCTTATTCATTTGCCGCGGATTTTATGAACTTAATTAGAGAGGAGGTCAGGAATCAGGAGAGCACTAGCGAGGTGGTGAATGCTAACTACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTGTGGCCACAGGGTCAATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGCCATGTAAGAGAGGGAGATAACATTTATGCACCAGATTACACAAAGGAAAGTCGGGTAGTTGGAGTACTGCTGTGGGCTAATAAGAGAAACAGTAATCTTTGGTTTGCGCCTGCACAGCGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCTATTGTACCTATTACTGAGGAATTGTTCTCTGATGTTGGCTATGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTATTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

240

Amino Acids

26.65

Weight (kDa)

5.28

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	51 - 97	2.4e-09	Glycosyl hydrolase family 81 C-terminal domain
Glyco_hydro81C	PF17652	99 - 239	1.8e-30	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	438
AccII	CGCG	1 cut(s)	269
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	6 cut(s)	75, 84, 100, 267, 269, 559
AclWI	GGATC	2 cut(s)	21, 34
AcoI	YGGCCR	1 cut(s)	387
AfaI	GTAC	3 cut(s)	507, 600, 713
AfiI	CCNNNNNNNGG	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	254, 347, 428, 586
AluI	AGCT	4 cut(s)	254, 347, 428, 586
Alw21I	GWGCWC	2 cut(s)	210, 317
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	2 cut(s)	21, 34
AlwNI	CAGNNNCTG	1 cut(s)	589
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	7 cut(s)	77, 86, 347, 407, 425, 586, 589
AspLEI	GCGC	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	158, 340
BalI	TGGCCA	1 cut(s)	389
BamHI	GGATCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	210, 317
BbvI	GCAGC	7 cut(s)	64, 73, 334, 419, 437, 573, 576
BccI	CCATC	1 cut(s)	690
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	9 cut(s)	78, 87, 101, 267, 348, 408, 426, 587, 590
BlsI	GCNGC	9 cut(s)	79, 88, 102, 268, 349, 409, 427, 588, 591
BmcAI	AGTACT	1 cut(s)	507
Bme1390I	CCNGG	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	28, 440
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	56, 98
BpuEI	CTTGAG	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	664
Bse8I	GATNNNNATC	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	5 cut(s)	35, 47, 89, 240, 701
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	4 cut(s)	66, 110, 357, 600
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	7 cut(s)	64, 73, 334, 419, 437, 573, 576
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	389
BshNI	GGYRCC	1 cut(s)	438
BsiHKAI	GWGCWC	2 cut(s)	210, 317
BsiSI	CCGG	2 cut(s)	30, 665
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	2 cut(s)	134, 337
BsnI	GGCC	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	210, 317
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	26, 106, 163, 379
BspACI	CCGC	6 cut(s)	75, 84, 100, 267, 269, 559
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	4 cut(s)	65, 109, 356, 601
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	28, 440
BspPI	GGATC	2 cut(s)	21, 34
BspT107I	GGYRCC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	664
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	4 cut(s)	26, 106, 163, 379
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	4 cut(s)	210, 405, 552, 572
BstDEI	CTNAG	5 cut(s)	52, 96, 213, 343, 609
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	5 cut(s)	35, 47, 89, 240, 701
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	4 cut(s)	29, 109, 166, 382
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	4 cut(s)	26, 106, 163, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 83, 86, 556
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	7 cut(s)	64, 73, 334, 419, 437, 573, 576
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	5 cut(s)	35, 47, 89, 240, 701
BtsIMutI	CAGTG	2 cut(s)	210, 375
Cac8I	GCNNGC	4 cut(s)	210, 405, 552, 572
CaiI	CAGNNNCTG	1 cut(s)	589
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	664
Cfr42I	CCGCGG	1 cut(s)	270
Csp6I	GTAC	3 cut(s)	506, 599, 712
CviAII	CATG	1 cut(s)	443
CviQI	GTAC	3 cut(s)	506, 599, 712
DdeI	CTNAG	5 cut(s)	52, 96, 213, 343, 609
DpnI	GATC	4 cut(s)	28, 108, 165, 381
DpnII	GATC	4 cut(s)	26, 106, 163, 379
EaeI	YGGCCR	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	446
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	442
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	9 cut(s)	78, 87, 101, 267, 348, 408, 426, 587, 590
FokI	GGATG	5 cut(s)	22, 34, 76, 247, 708
Fsp4HI	GCNGC	9 cut(s)	78, 87, 101, 267, 348, 408, 426, 587, 590
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	9 cut(s)	78, 87, 101, 267, 348, 408, 426, 587, 590
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	2 cut(s)	30, 665
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	1 cut(s)	446
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	304, 579
HpaII	CCGG	2 cut(s)	30, 665
HphI	GGTGA	2 cut(s)	158, 340
Hpy166II	GTNNAC	3 cut(s)	6, 657, 712
Hpy188I	TCNGA	1 cut(s)	625
Hpy188III	TCNNGA	3 cut(s)	30, 301, 308
Hpy8I	GTNNAC	3 cut(s)	6, 657, 712
HpyAV	CCTTC	1 cut(s)	686
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4V	TGCA	6 cut(s)	80, 89, 350, 407, 470, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 83, 86, 556
HpyF3I	CTNAG	5 cut(s)	52, 96, 213, 343, 609
Hsp92II	CATG	1 cut(s)	446
HspAI	GCGC	1 cut(s)	548
Kpn2I	TCCGGA	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	163
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	26, 106, 163, 379
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	7 cut(s)	64, 73, 334, 419, 437, 573, 576
LweI	GCATC	2 cut(s)	56, 98
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	4 cut(s)	28, 108, 165, 381
MboI	GATC	4 cut(s)	26, 106, 163, 379
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	210, 317
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	2 cut(s)	285, 614
MluNI	TGGCCA	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	481
Mox20I	TGGCCA	1 cut(s)	389
MroI	TCCGGA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	7 cut(s)	77, 86, 100, 269, 347, 559, 586
MspI	CCGG	2 cut(s)	30, 665
MspR9I	CCNGG	1 cut(s)	422
Mva1269I	GAATGC	2 cut(s)	134, 337
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	4 cut(s)	74, 83, 86, 556
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	4 cut(s)	26, 106, 163, 379
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	2 cut(s)	28, 440
PctI	GAATGC	2 cut(s)	134, 337
PfeI	GAWTC	2 cut(s)	304, 579
PkrI	GCNGC	9 cut(s)	79, 88, 102, 268, 349, 409, 427, 588, 591
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	28, 440
PstNI	CAGNNNCTG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	26
PvuII	CAGCTG	2 cut(s)	347, 586
RsaI	GTAC	3 cut(s)	507, 600, 713
RsaNI	GTAC	3 cut(s)	506, 599, 712
RseI	CAYNNNNRTG	1 cut(s)	203
SacII	CCGCGG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	9 cut(s)	78, 87, 101, 267, 348, 408, 426, 587, 590
Sau3AI	GATC	4 cut(s)	26, 106, 163, 379
ScaI	AGTACT	1 cut(s)	507
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	2 cut(s)	210, 317
SetI	ASST	7 cut(s)	256, 300, 327, 349, 430, 588, 604
SfaNI	GCATC	2 cut(s)	56, 98
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	2 cut(s)	285, 614
SsiI	CCGC	6 cut(s)	75, 84, 100, 267, 269, 559
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	533
TasI	AATT	2 cut(s)	285, 614
TatI	WGTACW	2 cut(s)	505, 711
TauI	GCSGC	2 cut(s)	103, 269
TfiI	GAWTC	2 cut(s)	304, 579
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	2 cut(s)	210, 382
TseI	GCWGC	7 cut(s)	77, 86, 347, 407, 425, 586, 589
TspDTI	ATGAA	3 cut(s)	249, 251, 293
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	210, 382
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.