Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Reverse (-)

49851176 .. 49860747

Gene Structure 9572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAAGCTGATCATCTGTAGGAAACGCCGCGTTGGGACGGTGTTCGCCGCTTCCGGTGATTACTACGCCACTCTCGGGGTTAATAAAGCCGCCACTAGCAAGGAAATCAAAACCGCTTATCGGAGATTAGCTCGCCAGTTCCACCCTGATGTCAACAAGCAACCTGGAGCAACTGAAAAATTTAAAGAGATCAGTGCTGCATATGAGGTGCTATCAGATGATAAGAAGCGGGCTTTATATGATCAATATGGTGAAGCTGGAGTTAAGAGCACATTGAGTGGGGGATCTTCAACCTATACGACTAATCCTTTCGATTTATTTGAGACATTTTTTGGGTCAAGCAATCCTTTCCCTGATATGGATACTCGTTTTGAAACACGTCGTCGCAGTACTGTTACTAAGGGTGAAGATATACGTTATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCCCATCTGGAAACATGTGAAGTTTGTGCTGGGAGTGGGGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCAGACACCTTTTGGCTTGTTTTCTCAGGTTTCTGCATGTCCGAAATGTGGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAATTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCCTCCTGGTGTTAGCAGGGGAAGCATTCTCAGAGTTGCTGGAGAGGGAGATGCTGGACCAAGAGGAGATGGCATAAATCTCTCTTCAACAGTATCTATAAGCTATCTGGACGCCATATTGGGAACTGTTGTTCAGGTTAAAACAGTGGAAGGATTAACAACACTACAAATTCCACCAGGCACCCAACCAGTACCAAAGCTGAACAAGCCATCAATTCGTGGTGACCATGTGTTTACAATTAAAGTAGCCATACCAAATCGTACCAGTGTCAAGGAACGTGAATTGCTTGAAGAACTTGCTTTACTCAGTAATACTACCGCCAGCCGATCACGTACTCGACCCAAGTCCCAGCCAGTTGCAAATACCCAAACTGATGTGGGAACAGTTGCAGATGAAACAGTGGAAGAAGATGATCAAAGTGACCCATGGAAGAAGTTAAAAGACTTTGCGGGGTCTGTTGCAAATGGTGCTTTAAAATGGCTGAGAGACAACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

406

Amino Acids

44.26

Weight (kDa)

8.99

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	20 - 81	1.8e-26	DnaJ domain
DnaJ_C	PF01556	138 - 263	1.4e-10	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	165 - 229	2.4e-15	DnaJ central domain
DnaJ_C	PF01556	264 - 326	4.9e-06	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	902
AccII	CGCG	1 cut(s)	30
AciI	CCGC	7 cut(s)	28, 48, 90, 114, 229, 1041, 1172
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	4 cut(s)	179, 434, 467, 891
AcyI	GRCGYC	1 cut(s)	834
AfaI	GTAC	4 cut(s)	391, 915, 985, 1057
AfiI	CCNNNNNNNGG	5 cut(s)	75, 120, 358, 537, 632
AflIII	ACRYGT	3 cut(s)	377, 491, 688
AgsI	TTSAA	5 cut(s)	291, 374, 473, 810, 1013
AjiI	CACGTC	2 cut(s)	380, 689
AjnI	CCWGG	3 cut(s)	163, 727, 898
AloI	GAACNNNNNNTCC	4 cut(s)	529, 561, 837, 869
AluBI	AGCT	5 cut(s)	7, 131, 257, 825, 922
AluI	AGCT	5 cut(s)	7, 131, 257, 825, 922
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	317, 1203
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	4 cut(s)	179, 434, 467, 891
AspS9I	GGNCC	1 cut(s)	779
AsuHPI	GGTGA	5 cut(s)	68, 263, 416, 656, 956
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	902
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	4 cut(s)	489, 635, 785, 940
BciT130I	CCWGG	3 cut(s)	165, 729, 900
BciVI	GTATCC	1 cut(s)	355
BclI	TGATCA	3 cut(s)	9, 241, 1135
BcoDI	GTCTC	2 cut(s)	317, 1203
BfaI	CTAG	2 cut(s)	96, 1219
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	4 cut(s)	28, 48, 90, 198
BlsI	GCNGC	4 cut(s)	29, 49, 91, 199
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	3 cut(s)	165, 729, 900
Bme18I	GGWCC	1 cut(s)	779
BmeT110I	CYCGRG	1 cut(s)	74
BmgBI	CACGTC	2 cut(s)	380, 689
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	2 cut(s)	529, 904
BmrFI	CCNGG	3 cut(s)	165, 729, 900
BmsI	GCATC	1 cut(s)	763
BoxI	GACNNNNGTC	1 cut(s)	1066
BplI	GAGNNNNNCTC	3 cut(s)	115, 147, 1200
BpmI	CTGGAG	4 cut(s)	186, 279, 699, 783
BsaAI	YACGTR	1 cut(s)	1055
BsaHI	GRCGYC	1 cut(s)	834
BsaJI	CCNNGG	1 cut(s)	1148
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 120, 358, 537, 632
Bse1I	ACTGG	4 cut(s)	136, 911, 987, 1076
BseBI	CCWGG	3 cut(s)	165, 729, 900
BseDI	CCNNGG	1 cut(s)	1148
BseLI	CCNNNNNNNGG	5 cut(s)	75, 120, 358, 537, 632
BseMII	CTCAG	5 cut(s)	432, 623, 766, 1042, 1196
BseNI	ACTGG	4 cut(s)	136, 911, 987, 1076
BseRI	GAGGAG	1 cut(s)	801
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	2 cut(s)	506, 1071
Bsh1236I	CGCG	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	902
BsiHKAI	GWGCWC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	49, 1054
BslI	CCNNNNNNNGG	5 cut(s)	75, 120, 358, 537, 632
BsmAI	GTCTC	2 cut(s)	317, 1203
BsmFI	GGGAC	2 cut(s)	49, 1054
BsmI	GAATGC	1 cut(s)	747
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	6 cut(s)	9, 189, 241, 284, 1049, 1135
Bsp19I	CCATGG	1 cut(s)	1148
BspACI	CCGC	7 cut(s)	28, 48, 90, 114, 229, 1041, 1172
BspCNI	CTCAG	5 cut(s)	433, 622, 765, 1041, 1197
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	529, 904
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	902
BsrI	ACTGG	4 cut(s)	136, 911, 987, 1076
BssECI	CCNNGG	1 cut(s)	1148
BssMI	GATC	6 cut(s)	9, 189, 241, 284, 1049, 1135
BssNI	GRCGYC	1 cut(s)	834
BssT1I	CCWWGG	1 cut(s)	1148
Bst2UI	CCWGG	3 cut(s)	165, 729, 900
Bst4CI	ACNGT	8 cut(s)	40, 394, 665, 814, 850, 868, 1108, 1123
Bst6I	CTCTTC	1 cut(s)	811
BstACI	GRCGYC	1 cut(s)	834
BstAPI	GCANNNNNTGC	1 cut(s)	1190
BstBAI	YACGTR	1 cut(s)	1055
BstC8I	GCNNGC	3 cut(s)	133, 231, 1045
BstDEI	CTNAG	6 cut(s)	399, 441, 609, 752, 1028, 1205
BstDSI	CCRYGG	1 cut(s)	1148
BstEII	GGTNACC	1 cut(s)	944
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	6 cut(s)	12, 192, 244, 287, 1052, 1138
BstMAI	GTCTC	2 cut(s)	317, 1203
BstMBI	GATC	6 cut(s)	9, 189, 241, 284, 1049, 1135
BstMWI	GCNNNNNNNGC	3 cut(s)	744, 928, 1190
BstNI	CCWGG	3 cut(s)	165, 729, 900
BstNSI	RCATGY	2 cut(s)	495, 624
BstPAI	GACNNNNGTC	1 cut(s)	1066
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	3 cut(s)	163, 727, 898
BstSFI	CTRYAG	1 cut(s)	16
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	1148
BtrI	CACGTC	2 cut(s)	380, 689
BtsIMutI	CAGTG	4 cut(s)	199, 873, 994, 1128
Cac8I	GCNNGC	3 cut(s)	133, 231, 1045
Cfr13I	GGNCC	1 cut(s)	779
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	4 cut(s)	390, 914, 984, 1056
CviAII	CATG	4 cut(s)	492, 621, 950, 1149
CviQI	GTAC	4 cut(s)	390, 914, 984, 1056
DdeI	CTNAG	6 cut(s)	399, 441, 609, 752, 1028, 1205
DpnI	GATC	6 cut(s)	11, 191, 243, 286, 1051, 1137
DpnII	GATC	6 cut(s)	9, 189, 241, 284, 1049, 1135
DraI	TTTAAA	2 cut(s)	184, 1197
Eam1104I	CTCTTC	1 cut(s)	811
EarI	CTCTTC	1 cut(s)	811
Eco130I	CCWWGG	1 cut(s)	1148
Eco47I	GGWCC	1 cut(s)	779
Eco88I	CYCGRG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	3 cut(s)	163, 727, 898
EcoT14I	CCWWGG	1 cut(s)	1148
ErhI	CCWWGG	1 cut(s)	1148
FaeI	CATG	4 cut(s)	495, 624, 953, 1152
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FaqI	GGGAC	2 cut(s)	49, 1054
FatI	CATG	4 cut(s)	491, 620, 949, 1148
FauI	CCCGC	2 cut(s)	222, 1165
FauNDI	CATATG	1 cut(s)	202
FbaI	TGATCA	3 cut(s)	9, 241, 1135
Fnu4HI	GCNGC	4 cut(s)	28, 48, 90, 198
Fsp4HI	GCNGC	4 cut(s)	28, 48, 90, 198
FspBI	CTAG	2 cut(s)	96, 1219
GluI	GCNGC	4 cut(s)	28, 48, 90, 198
GsaI	CCCAGC	2 cut(s)	510, 1075
GsuI	CTGGAG	4 cut(s)	186, 279, 699, 783
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	842
Hin1I	GRCGYC	1 cut(s)	834
Hin1II	CATG	4 cut(s)	495, 624, 953, 1152
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	5 cut(s)	68, 263, 416, 656, 956
Hpy166II	GTNNAC	2 cut(s)	154, 957
Hpy188I	TCNGA	7 cut(s)	123, 217, 442, 627, 658, 669, 755
Hpy188III	TCNNGA	3 cut(s)	485, 678, 830
Hpy8I	GTNNAC	2 cut(s)	154, 957
Hpy99I	CGWCG	2 cut(s)	384, 387
HpyAV	CCTTC	2 cut(s)	677, 866
HpyCH4III	ACNGT	8 cut(s)	40, 394, 665, 814, 850, 868, 1108, 1123
HpyCH4IV	ACGT	5 cut(s)	379, 415, 688, 1000, 1054
HpyCH4V	TGCA	5 cut(s)	200, 620, 1082, 1112, 1184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	744, 928, 1190
HpyF3I	CTNAG	6 cut(s)	399, 441, 609, 752, 1028, 1205
HpySE526I	ACGT	5 cut(s)	379, 415, 688, 1000, 1054
Hsp92I	GRCGYC	1 cut(s)	834
Hsp92II	CATG	4 cut(s)	495, 624, 953, 1152
Ksp22I	TGATCA	3 cut(s)	9, 241, 1135
Kzo9I	GATC	6 cut(s)	9, 189, 241, 284, 1049, 1135
LmnI	GCTCC	2 cut(s)	167, 533
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	763
MaeI	CTAG	2 cut(s)	96, 1219
MaeII	ACGT	5 cut(s)	379, 415, 688, 1000, 1054
MaeIII	GTNAC	3 cut(s)	394, 944, 1142
MalI	GATC	6 cut(s)	11, 191, 243, 286, 1051, 1137
MboI	GATC	6 cut(s)	9, 189, 241, 284, 1049, 1135
MboII	GAAGA	7 cut(s)	279, 419, 798, 1025, 1139, 1142, 1165
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	8 cut(s)	179, 434, 467, 670, 891, 936, 960, 1004
MmeI	TCCRAC	1 cut(s)	647
MnlI	CCTC	7 cut(s)	199, 436, 531, 555, 735, 760, 779
MseI	TTAA	9 cut(s)	81, 183, 264, 699, 861, 878, 963, 1160, 1196
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	3 cut(s)	165, 729, 900
Mva1269I	GAATGC	1 cut(s)	747
MvaI	CCWGG	3 cut(s)	165, 729, 900
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	744, 928, 1190
NcoI	CCATGG	1 cut(s)	1148
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	6 cut(s)	9, 189, 241, 284, 1049, 1135
NlaIII	CATG	4 cut(s)	495, 624, 953, 1152
NlaIV	GGNNCC	2 cut(s)	529, 904
NmuCI	GTSAC	2 cut(s)	944, 1142
NspI	RCATGY	2 cut(s)	495, 624
PciI	ACATGT	1 cut(s)	491
PctI	GAATGC	1 cut(s)	747
PkrI	GCNGC	4 cut(s)	29, 49, 91, 199
Ppu21I	YACGTR	1 cut(s)	1055
PscI	ACATGT	1 cut(s)	491
PshAI	GACNNNNGTC	1 cut(s)	1066
Psp6I	CCWGG	3 cut(s)	163, 727, 898
PspEI	GGTNACC	1 cut(s)	944
PspFI	CCCAGC	2 cut(s)	506, 1071
PspGI	CCWGG	3 cut(s)	163, 727, 898
PspN4I	GGNNCC	2 cut(s)	529, 904
PspPI	GGNCC	1 cut(s)	779
PsrI	GAACNNNNNNTAC	2 cut(s)	1008, 1040
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	4 cut(s)	391, 915, 985, 1057
RsaNI	GTAC	4 cut(s)	390, 914, 984, 1056
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	9 cut(s)	81, 183, 264, 699, 861, 878, 963, 1160, 1196
SatI	GCNGC	4 cut(s)	28, 48, 90, 198
Sau3AI	GATC	6 cut(s)	9, 189, 241, 284, 1049, 1135
Sau96I	GGNCC	1 cut(s)	779
ScaI	AGTACT	1 cut(s)	391
ScrFI	CCNGG	3 cut(s)	165, 729, 900
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	1 cut(s)	763
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	8 cut(s)	179, 434, 467, 670, 891, 936, 960, 1004
SsiI	CCGC	7 cut(s)	28, 48, 90, 114, 229, 1041, 1172
SspMI	CTAG	2 cut(s)	96, 1219
StyD4I	CCNGG	3 cut(s)	163, 727, 898
StyI	CCWWGG	1 cut(s)	1148
TaaI	ACNGT	8 cut(s)	40, 394, 665, 814, 850, 868, 1108, 1123
TaiI	ACGT	5 cut(s)	382, 418, 691, 1003, 1057
TaqI	TCGA	2 cut(s)	312, 1060
TasI	AATT	8 cut(s)	179, 434, 467, 670, 891, 936, 960, 1004
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	3 cut(s)	30, 50, 92
Tru1I	TTAA	9 cut(s)	81, 183, 264, 699, 861, 878, 963, 1160, 1196
Tru9I	TTAA	9 cut(s)	81, 183, 264, 699, 861, 878, 963, 1160, 1196
TscAI	CASTG	4 cut(s)	199, 873, 994, 1128
TseFI	GTSAC	2 cut(s)	944, 1142
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	2 cut(s)	944, 1142
TspDTI	ATGAA	2 cut(s)	17, 1131
TspRI	CASTG	4 cut(s)	199, 873, 994, 1128
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	4 cut(s)	179, 434, 467, 891
XceI	RCATGY	2 cut(s)	495, 624
XspI	CTAG	2 cut(s)	96, 1219
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.