Rroxscaffold_2G00109510

Chaperone protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
33673687 .. 33682425
8739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109510.1

Sequence Viewer

Length: 1161 bp
ATGGCCGCCGCGGCCCTCTCTCTCCTCCCTCCCTCCTCTCCTCACCTCCTCTTTCCGCCGTCGCCGTCGCCGTCTTCGTCTTCATCTTCTTCCTTTGCTCTCGGCGGGTCCCGCAACAGCTTCGCCTCACTCAATTGTACTACTCGTCCGTGGAACAAGTTGAGTAGGAAACGCCGCGCTGGGACGGTGTTCGCCGCTTCCGGTGATTATTACGCCACTCTTGGGGTTAATAAAGCCGCCACTAGCAAGGAAATCAAAACCGCTTATCGGAGATTAGCTCGCCAGTTCCACCCTGATGTCAACAAGCAACCTGGAGCAACTGAAAAGTTTAAAGAGATCAGTGCTGCATATGAGGTGCTATCAGATGATAAGAAGCGGGCTTTATATGATCAATATGGTGAAGCTGGAGTTAAGAGCACGATGAGTGGGGGATCTTCAACCTATACGACTAATCCTTTCGATTTATTTGAGACATTTTTTGGGTCAAGCAATCCTTTCCCTGATATGGATACTCGTTTTGAAACACGTCGTCGCAGTACTGTTACTAAGGGTGAAGATATACGTTATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCCCATCTGGAAACATGTGAAGTTTGCGCTGGGAGTGGGGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCAGACACCTTTTGGCTTGTTTTCTCAGGTTTCTGCATGTCCGAAATGTAGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAAATGCTCTGGAGAAGGACGTGTTCGTGTGAAGAAAAGTATCAAAGTGAAAGTTCCTCCTGGTGTTAGCAGGGGAAGTATTCTCAGAGTTGCTGGAGAGGGAGATGCTGGACCGAGAGGGGGCCCTCCTGGAGATCTTTATGTATATCTTGATGTTGAAGAAATAGAAGGAATTCGAAGAGATGGCATAAATCTCTCTTCAACAGTATCTATAAGCTATCTGGACGCCATATTGGGCACTGTTGTTCCGGTTAAAACAGTGGAAGGATTAACAACACTACAAATTCCACCTGGCACCCAACCAGGTGACATTCTAGTCCTGACCAAAAAGGAGTACCAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

386

Amino Acids

41.62

Weight (kDa)

8.93

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 69 - 130 1.7e-26 DnaJ domain
DnaJ_C PF01556 187 - 382 8.1e-33 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 214 - 278 1.3e-15 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1130
AccB1I GGYRCC 1 cut(s) 1109
AccII CGCG 2 cut(s) 11, 177
AclWI GGATC 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 581, 614, 987, 1098
AcyI GRCGYC 1 cut(s) 1041
AfaI GTAC 3 cut(s) 139, 538, 1151
AfiI CCNNNNNNNGG 5 cut(s) 222, 267, 505, 684, 935
AflIII ACRYGT 3 cut(s) 524, 638, 835
AgsI TTSAA 5 cut(s) 438, 521, 620, 974, 1017
AjiI CACGTC 2 cut(s) 527, 836
AjnI CCWGG 5 cut(s) 310, 874, 943, 1105, 1117
AloI GAACNNNNNNTCC 2 cut(s) 676, 708
AluBI AGCT 5 cut(s) 120, 278, 404, 1032, 1158
AluI AGCT 5 cut(s) 120, 278, 404, 1032, 1158
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 1 cut(s) 439
AoxI GGCC 3 cut(s) 3, 12, 937
ApaI GGGCCC 1 cut(s) 941
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 4 cut(s) 581, 614, 987, 1098
Asp700I GAANNNNTTC 1 cut(s) 987
AspLEI GCGC 2 cut(s) 179, 653
AspS9I GGNCC 5 cut(s) 13, 108, 926, 937, 938
AsuHPI GGTGA 6 cut(s) 35, 215, 410, 563, 803, 1133
AsuII TTCGAA 1 cut(s) 991
AvaII GGWCC 2 cut(s) 108, 926
BaeGI GKGCMC 2 cut(s) 941, 1055
BanI GGYRCC 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 941
BbsI GAAGAC 2 cut(s) 66, 72
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 1 cut(s) 331
BccI CCATC 3 cut(s) 636, 782, 992
BceAI ACGGC 3 cut(s) 43, 49, 55
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 5 cut(s) 312, 876, 945, 1107, 1119
BciVI GTATCC 1 cut(s) 502
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 2 cut(s) 243, 1130
BfuI GTATCC 1 cut(s) 502
BglI GCCNNNNNGGC 1 cut(s) 11
BglII AGATCT 1 cut(s) 949
BisI GCNGC 7 cut(s) 6, 9, 12, 175, 195, 237, 345
BlsI GCNGC 7 cut(s) 7, 10, 13, 176, 196, 238, 346
BmcAI AGTACT 1 cut(s) 538
Bme1390I CCNGG 5 cut(s) 312, 876, 945, 1107, 1119
Bme18I GGWCC 2 cut(s) 108, 926
BmgBI CACGTC 2 cut(s) 527, 836
BmgT120I GGNCC 5 cut(s) 13, 108, 926, 937, 938
BmiI GGNNCC 6 cut(s) 109, 110, 676, 938, 939, 1111
BmrFI CCNGG 5 cut(s) 312, 876, 945, 1107, 1119
BmsI GCATC 1 cut(s) 910
BpiI GAAGAC 2 cut(s) 66, 72
BplI GAGNNNNNCTC 2 cut(s) 262, 294
BpmI CTGGAG 5 cut(s) 333, 426, 846, 930, 966
Bpu14I TTCGAA 1 cut(s) 991
BsaHI GRCGYC 1 cut(s) 1041
BsaJI CCNNGG 2 cut(s) 9, 149
BsaWI WCCGGW 2 cut(s) 200, 1063
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 5 cut(s) 222, 267, 505, 684, 935
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 5 cut(s) 312, 876, 945, 1107, 1119
BseDI CCNNGG 2 cut(s) 9, 149
BseLI CCNNNNNNNGG 5 cut(s) 222, 267, 505, 684, 935
BseMII CTCAG 3 cut(s) 579, 770, 913
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 4 cut(s) 14, 25, 30, 38
BseSI GKGCMC 2 cut(s) 941, 1055
BseXI GCAGC 1 cut(s) 331
BseYI CCCAGC 2 cut(s) 179, 653
Bsh1236I CGCG 2 cut(s) 11, 177
BshFI GGCC 3 cut(s) 5, 14, 939
BshNI GGYRCC 1 cut(s) 1109
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 2 cut(s) 201, 1064
BslFI GGGAC 2 cut(s) 94, 196
BslI CCNNNNNNNGG 5 cut(s) 222, 267, 505, 684, 935
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 94, 196
BsnI GGCC 3 cut(s) 5, 14, 939
Bsp119I TTCGAA 1 cut(s) 991
Bsp120I GGGCCC 1 cut(s) 937
Bsp1286I GDGCHC 3 cut(s) 419, 941, 1055
Bsp143I GATC 4 cut(s) 336, 388, 431, 949
BspANI GGCC 3 cut(s) 5, 14, 939
BspCNI CTCAG 3 cut(s) 580, 769, 912
BspFNI CGCG 2 cut(s) 11, 177
BspLI GGNNCC 6 cut(s) 109, 110, 676, 938, 939, 1111
BspPI GGATC 1 cut(s) 439
BspT104I TTCGAA 1 cut(s) 991
BspT107I GGYRCC 1 cut(s) 1109
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 9, 149
BssMI GATC 4 cut(s) 336, 388, 431, 949
BssNI GRCGYC 1 cut(s) 1041
Bst2UI CCWGG 5 cut(s) 312, 876, 945, 1107, 1119
Bst4CI ACNGT 6 cut(s) 187, 541, 812, 1021, 1057, 1075
Bst6I CTCTTC 2 cut(s) 988, 1018
BstACI GRCGYC 1 cut(s) 1041
BstBI TTCGAA 1 cut(s) 991
BstC8I GCNNGC 2 cut(s) 280, 378
BstDEI CTNAG 4 cut(s) 546, 588, 756, 899
BstDSI CCRYGG 2 cut(s) 9, 149
BstFNI CGCG 2 cut(s) 11, 177
BstHHI GCGC 2 cut(s) 179, 653
BstKTI GATC 4 cut(s) 339, 391, 434, 952
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 4 cut(s) 336, 388, 431, 949
BstMWI GCNNNNNNNGC 2 cut(s) 11, 111
BstNI CCWGG 5 cut(s) 312, 876, 945, 1107, 1119
BstNSI RCATGY 2 cut(s) 642, 771
BstSCI CCNGG 5 cut(s) 310, 874, 943, 1105, 1117
BstSLI GKGCMC 2 cut(s) 941, 1055
BstUI CGCG 2 cut(s) 11, 177
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 2 cut(s) 66, 72
BstX2I RGATCY 2 cut(s) 431, 949
BstYI RGATCY 2 cut(s) 431, 949
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 3 cut(s) 5, 14, 939
BtgI CCRYGG 2 cut(s) 9, 149
BtrI CACGTC 2 cut(s) 527, 836
BtsIMutI CAGTG 3 cut(s) 346, 1053, 1080
Cac8I GCNNGC 2 cut(s) 280, 378
CfoI GCGC 2 cut(s) 179, 653
Cfr13I GGNCC 5 cut(s) 13, 108, 926, 937, 938
Cfr42I CCGCGG 1 cut(s) 12
CseI GACGC 1 cut(s) 1049
CsiI ACCWGGT 1 cut(s) 1117
Csp6I GTAC 3 cut(s) 138, 537, 1150
CviAII CATG 2 cut(s) 639, 768
CviQI GTAC 3 cut(s) 138, 537, 1150
DdeI CTNAG 4 cut(s) 546, 588, 756, 899
DpnI GATC 4 cut(s) 338, 390, 433, 951
DpnII GATC 4 cut(s) 336, 388, 431, 949
DraI TTTAAA 1 cut(s) 331
DrdI GACNNNNNNGTC 1 cut(s) 1130
DseDI GACNNNNNNGTC 1 cut(s) 1130
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 988, 1018
EarI CTCTTC 2 cut(s) 988, 1018
EciI GGCGGA 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 941
Eco47I GGWCC 2 cut(s) 108, 926
EcoO109I RGGNCCY 3 cut(s) 108, 937, 938
EcoRI GAATTC 1 cut(s) 987
EcoRII CCWGG 5 cut(s) 310, 874, 943, 1105, 1117
EcoT38I GRGCYC 1 cut(s) 941
FaeI CATG 2 cut(s) 642, 771
FalI AAGNNNNNCTT 2 cut(s) 478, 510
FaqI GGGAC 2 cut(s) 94, 196
FatI CATG 2 cut(s) 638, 767
FauI CCCGC 3 cut(s) 98, 119, 369
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 7 cut(s) 6, 9, 12, 175, 195, 237, 345
FriOI GRGCYC 1 cut(s) 941
Fsp4HI GCNGC 7 cut(s) 6, 9, 12, 175, 195, 237, 345
FspBI CTAG 2 cut(s) 243, 1130
GlaI GCGC 2 cut(s) 178, 652
GluI GCNGC 7 cut(s) 6, 9, 12, 175, 195, 237, 345
GsaI CCCAGC 2 cut(s) 183, 657
GsuI CTGGAG 5 cut(s) 333, 426, 846, 930, 966
HaeIII GGCC 3 cut(s) 5, 14, 939
HapII CCGG 2 cut(s) 201, 1064
HgaI GACGC 1 cut(s) 1049
HhaI GCGC 2 cut(s) 179, 653
Hin1I GRCGYC 1 cut(s) 1041
Hin1II CATG 2 cut(s) 642, 771
Hin6I GCGC 2 cut(s) 177, 651
HinP1I GCGC 2 cut(s) 177, 651
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HpaII CCGG 2 cut(s) 201, 1064
HphI GGTGA 6 cut(s) 35, 215, 410, 563, 803, 1133
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 7 cut(s) 270, 364, 589, 774, 805, 816, 902
Hpy188III TCNNGA 5 cut(s) 632, 825, 965, 1037, 1135
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 4 cut(s) 64, 70, 531, 534
HpyAV CCTTC 3 cut(s) 824, 977, 1073
HpyCH4III ACNGT 6 cut(s) 187, 541, 812, 1021, 1057, 1075
HpyCH4IV ACGT 3 cut(s) 526, 562, 835
HpyCH4V TGCA 2 cut(s) 347, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 111
HpyF3I CTNAG 4 cut(s) 546, 588, 756, 899
HpySE526I ACGT 3 cut(s) 526, 562, 835
Hsp92I GRCGYC 1 cut(s) 1041
Hsp92II CATG 2 cut(s) 642, 771
HspAI GCGC 2 cut(s) 177, 651
KflI GGGWCCC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 388
KspI CCGCGG 1 cut(s) 12
Kzo9I GATC 4 cut(s) 336, 388, 431, 949
LmnI GCTCC 2 cut(s) 314, 680
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 910
MabI ACCWGGT 1 cut(s) 1117
MaeI CTAG 2 cut(s) 243, 1130
MaeII ACGT 3 cut(s) 526, 562, 835
MaeIII GTNAC 2 cut(s) 541, 1121
MalI GATC 4 cut(s) 338, 390, 433, 951
MboI GATC 4 cut(s) 336, 388, 431, 949
MfeI CAATTG 1 cut(s) 133
MflI RGATCY 2 cut(s) 431, 949
MhlI GDGCHC 3 cut(s) 419, 941, 1055
MluCI AATT 5 cut(s) 133, 581, 614, 987, 1098
MmeI TCCRAC 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 5 cut(s) 228, 330, 411, 1068, 1085
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 2 cut(s) 201, 1064
MspR9I CCNGG 5 cut(s) 312, 876, 945, 1107, 1119
MunI CAATTG 1 cut(s) 133
MvaI CCWGG 5 cut(s) 312, 876, 945, 1107, 1119
MvnI CGCG 2 cut(s) 11, 177
MwoI GCNNNNNNNGC 2 cut(s) 11, 111
NdeI CATATG 1 cut(s) 349
NdeII GATC 4 cut(s) 336, 388, 431, 949
NlaIII CATG 2 cut(s) 642, 771
NlaIV GGNNCC 6 cut(s) 109, 110, 676, 938, 939, 1111
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 1121
NspI RCATGY 2 cut(s) 642, 771
NspV TTCGAA 1 cut(s) 991
PciI ACATGT 1 cut(s) 638
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 74
PdmI GAANNNNTTC 1 cut(s) 987
PfoI TCCNGGA 1 cut(s) 943
PkrI GCNGC 7 cut(s) 7, 10, 13, 176, 196, 238, 346
PpuMI RGGWCCY 1 cut(s) 108
PscI ACATGT 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 5 cut(s) 310, 874, 943, 1105, 1117
PspFI CCCAGC 2 cut(s) 179, 653
PspGI CCWGG 5 cut(s) 310, 874, 943, 1105, 1117
PspN4I GGNNCC 6 cut(s) 109, 110, 676, 938, 939, 1111
PspOMI GGGCCC 1 cut(s) 937
PspPI GGNCC 5 cut(s) 13, 108, 926, 937, 938
PspPPI RGGWCCY 1 cut(s) 108
PsuI RGATCY 2 cut(s) 431, 949
RsaI GTAC 3 cut(s) 139, 538, 1151
RsaNI GTAC 3 cut(s) 138, 537, 1150
RseI CAYNNNNRTG 1 cut(s) 294
SacII CCGCGG 1 cut(s) 12
SaqAI TTAA 5 cut(s) 228, 330, 411, 1068, 1085
SatI GCNGC 7 cut(s) 6, 9, 12, 175, 195, 237, 345
Sau3AI GATC 4 cut(s) 336, 388, 431, 949
Sau96I GGNCC 5 cut(s) 13, 108, 926, 937, 938
ScaI AGTACT 1 cut(s) 538
ScrFI CCNGG 5 cut(s) 312, 876, 945, 1107, 1119
SduI GDGCHC 3 cut(s) 419, 941, 1055
SexAI ACCWGGT 1 cut(s) 1117
SfaNI GCATC 1 cut(s) 910
SfiI GGCCNNNNNGGCC 1 cut(s) 11
Sfr303I CCGCGG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 991
SgrBI CCGCGG 1 cut(s) 12
SinI GGWCC 2 cut(s) 108, 926
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 5 cut(s) 133, 581, 614, 987, 1098
SspMI CTAG 2 cut(s) 243, 1130
StyD4I CCNGG 5 cut(s) 310, 874, 943, 1105, 1117
TaaI ACNGT 6 cut(s) 187, 541, 812, 1021, 1057, 1075
TaiI ACGT 3 cut(s) 529, 565, 838
TaqI TCGA 2 cut(s) 459, 991
TaqII GACCGA 1 cut(s) 943
TasI AATT 5 cut(s) 133, 581, 614, 987, 1098
TatI WGTACW 2 cut(s) 137, 536
TauI GCSGC 6 cut(s) 8, 11, 14, 177, 197, 239
Tru1I TTAA 5 cut(s) 228, 330, 411, 1068, 1085
Tru9I TTAA 5 cut(s) 228, 330, 411, 1068, 1085
TscAI CASTG 3 cut(s) 346, 1060, 1080
TseFI GTSAC 1 cut(s) 1121
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 1121
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 3 cut(s) 346, 1060, 1080
VpaK11BI GGWCC 2 cut(s) 108, 926
XapI RAATTY 4 cut(s) 581, 614, 987, 1098
XceI RCATGY 2 cut(s) 642, 771
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 2 cut(s) 243, 1130
ZrmI AGTACT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.