Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Forward (+)

57223199 .. 57229224

Gene Structure 6026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG394000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGGAAAGACCCTTTGGCCTTCGTGGAAGAGAAGCAATGTGGAATGTGGATGGCAACTATTCTGGAGCCCATGAAGTTGTTTACAGACCCGGAAGAGGAGGAGTGGCTGTACTGGAGGAGGAGCTTGGGCGCTACAGAATCTGCTGTTGCAGTTGCCGCCGCCATATTCTATCCTACTAATCCTTTCGATTTAGTTGAGACATTTTTTGGGTCAAGCAATCCTTTACTTGATATGGATACTCGTTTTGAAACACGTCGTTGCAGTACTGTTACTAAGGGTGAAGATATACGTTTGCGCTGGGAGTGGAGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCGACACCTATTGGCTTGTTTTCTCAGGTTTCTGCATGTCTGGATTGTGGTGGAGATGGTGAAGTTATTTCTGAATACTTTCGGAAGTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAGGTTCCTCCTCGTGTTAGCAGGGGAAGTATTCTTAGAGTTGCTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

186

Amino Acids

21.28

Weight (kDa)

5.74

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	159, 162
AfaI	GTAC	2 cut(s)	113, 268
AfiI	CCNNNNNNNGG	2 cut(s)	97, 331
AflIII	ACRYGT	2 cut(s)	254, 481
AgsI	TTSAA	1 cut(s)	251
AjiI	CACGTC	2 cut(s)	257, 482
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	1 cut(s)	126
AluI	AGCT	1 cut(s)	126
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	2 cut(s)	134, 300
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	293, 449
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	470
BccI	CCATC	2 cut(s)	46, 428
BciVI	GTATCC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	159, 162
BlsI	GCNGC	2 cut(s)	160, 163
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	92
BmgBI	CACGTC	2 cut(s)	257, 482
BmiI	GGNNCC	3 cut(s)	69, 323, 516
BmrFI	CCNGG	1 cut(s)	92
BpmI	CTGGAG	3 cut(s)	86, 136, 492
BpuMI	CCSGG	1 cut(s)	92
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 301, 323, 331, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 331
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	97, 331
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	5 cut(s)	113, 116, 133, 136, 510
BseYI	CCCAGC	1 cut(s)	300
BshFI	GGCC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	97, 331
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	72, 470
BspACI	CCGC	2 cut(s)	159, 162
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	69, 323, 516
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	24, 90
BstDEI	CTNAG	3 cut(s)	276, 402, 545
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	134, 300
BstMAI	GTCTC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	20
BtrI	CACGTC	2 cut(s)	257, 482
BtsCI	GGATG	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	2 cut(s)	134, 300
Csp6I	GTAC	2 cut(s)	112, 267
CviAII	CATG	2 cut(s)	73, 414
CviJI	RGCY	6 cut(s)	20, 70, 109, 126, 322, 393
CviKI_1	RGCY	6 cut(s)	20, 70, 109, 126, 322, 393
CviQI	GTAC	2 cut(s)	112, 267
DdeI	CTNAG	3 cut(s)	276, 402, 545
Eam1104I	CTCTTC	2 cut(s)	24, 90
EarI	CTCTTC	2 cut(s)	24, 90
Eco24I	GRGCYC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	2 cut(s)	76, 417
FaiI	YATR	7 cut(s)	74, 167, 236, 290, 338, 369, 415
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	2 cut(s)	72, 413
Fnu4HI	GCNGC	2 cut(s)	159, 162
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	159, 162
GlaI	GCGC	2 cut(s)	133, 299
GluI	GCNGC	2 cut(s)	159, 162
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	3 cut(s)	86, 136, 492
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	2 cut(s)	134, 300
Hin1II	CATG	2 cut(s)	76, 417
Hin6I	GCGC	2 cut(s)	132, 298
HinP1I	GCGC	2 cut(s)	132, 298
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	2 cut(s)	293, 449
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	451, 462
Hpy188III	TCNNGA	3 cut(s)	65, 419, 471
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	3 cut(s)	31, 470, 505
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	3 cut(s)	256, 292, 481
HpyCH4V	TGCA	3 cut(s)	152, 264, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	276, 402, 545
HpySE526I	ACGT	3 cut(s)	256, 292, 481
Hsp92II	CATG	2 cut(s)	76, 417
HspAI	GCGC	2 cut(s)	132, 298
LmnI	GCTCC	4 cut(s)	67, 123, 309, 327
LpnPI	CCDG	9 cut(s)	50, 100, 105, 286, 389, 404, 456, 517, 540
MaeII	ACGT	3 cut(s)	256, 292, 481
MaeIII	GTNAC	1 cut(s)	271
MboII	GAAGA	3 cut(s)	41, 107, 296
MhlI	GDGCHC	2 cut(s)	72, 470
MnlI	CCTC	8 cut(s)	91, 94, 111, 114, 325, 349, 528, 531
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	1 cut(s)	492
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	92
NlaIII	CATG	2 cut(s)	76, 417
NlaIV	GGNNCC	3 cut(s)	69, 323, 516
NspI	RCATGY	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	160, 163
PspFI	CCCAGC	1 cut(s)	300
PspN4I	GGNNCC	3 cut(s)	69, 323, 516
PstNI	CAGNNNCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	113, 268
RsaNI	GTAC	2 cut(s)	112, 267
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	2 cut(s)	159, 162
ScaI	AGTACT	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	72, 470
SetI	ASST	7 cut(s)	128, 259, 295, 388, 408, 484, 516
SfcI	CTRYAG	1 cut(s)	135
SsiI	CCGC	2 cut(s)	159, 162
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	3 cut(s)	259, 295, 484
TaqI	TCGA	1 cut(s)	189
TatI	WGTACW	2 cut(s)	111, 266
TauI	GCSGC	2 cut(s)	161, 164
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TspDTI	ATGAA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	456
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.