Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Forward (+)

51713085 .. 51721438

Gene Structure 8354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCCACCGCGGCCCTCCCTCCCTCACTCTCCTCTCCTCACCTTCTCTTCCCGCCGTTGCCGTCTTCTTTCTTTGCTCTCGGAGGGTCCCACAAGAGCTTCGCGTCACTTAATTTTACTACTCGTCCGTGGAACAAGTTGAGTACGAAACGCCGCGTTGGGACGGTGTTTGCCGCTTCCGGTGATTACTACGCCACTCTCGGGGTTAGTAAAGCCGCCACTAGCAAGGAAATCAAAACCGCTTTTCGGAGATTAGCTCGCCAGCAACCTGGAGCCACTGAAAAGTTTAAAGAGATCAGTGCTGCATATGAGGTGCTATCAGATGATAAGAAGCCGGATTTATATGATCAGTATGGTGAAGCTGGAGTTAAGAGCACGATGATTGGGGGATCTTCAACCTATACGGTCAACAATATTGCCATGTATTATCTATTTGTTGGATATATTCTGGGACAATCTGGCCTCAATTTGGTCATTCTACTAATCCTTTCGATTTATTTGGGACATTTTTTTGGGTCAAGAAATCCTTTCCCTGATATGGATACTCGTTTTGAAACACGTCGTTGCAGTACTGTTACTAAGGGTGAAGATATACGTTATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCCCATCCGGAAACATGTGAAGTTTGTGCTGGGAGTGGAGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCAGACACCTTTTGTCTTGTTTTCTCAGGTTTCTGCATGTCCGAATTGTGGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAAGTGCTCTGGAGAAGGGCGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCCTCCTCATGTTAGCAGGGGAAGTATTCTTAGAGTTGCTGGACCGAGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

319

Amino Acids

34.67

Weight (kDa)

9.34

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	62 - 116	1.5e-14	DnaJ domain
DnaJ_CXXCXGXG	PF00684	225 - 289	3.5e-15	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	11, 104, 156
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	7 cut(s)	9, 11, 53, 154, 174, 216, 240
AclWI	GGATC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	614, 647
AfaI	GTAC	2 cut(s)	145, 571
AfiI	CCNNNNNNNGG	6 cut(s)	201, 246, 469, 538, 717, 812
AflIII	ACRYGT	2 cut(s)	557, 671
AgsI	TTSAA	3 cut(s)	396, 554, 653
AjiI	CACGTC	1 cut(s)	560
AjnI	CCWGG	1 cut(s)	268
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
AluBI	AGCT	3 cut(s)	99, 257, 362
AluI	AGCT	3 cut(s)	99, 257, 362
Alw21I	GWGCWC	2 cut(s)	377, 857
AlwI	GGATC	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	3 cut(s)	3, 12, 460
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	614, 647
AspS9I	GGNCC	3 cut(s)	13, 87, 944
AsuHPI	GGTGA	5 cut(s)	32, 194, 368, 596, 836
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	87, 944
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	377, 857
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	669, 815
BceAI	ACGGC	2 cut(s)	40, 46
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	535
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	535
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	5 cut(s)	12, 154, 174, 216, 303
BlsI	GCNGC	5 cut(s)	13, 155, 175, 217, 304
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	2 cut(s)	87, 944
BmeT110I	CYCGRG	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	560
BmgT120I	GGNCC	3 cut(s)	13, 87, 944
BmiI	GGNNCC	4 cut(s)	88, 89, 274, 709
BmrFI	CCNGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BpmI	CTGGAG	3 cut(s)	291, 384, 879
BsaJI	CCNNGG	2 cut(s)	9, 128
BsaWI	WCCGGW	2 cut(s)	179, 664
BsaXI	ACNNNNNCTCC	4 cut(s)	687, 709, 717, 739
Bsc4I	CCNNNNNNNGG	6 cut(s)	201, 246, 469, 538, 717, 812
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	9, 128
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	6 cut(s)	201, 246, 469, 538, 717, 812
BseMII	CTCAG	2 cut(s)	612, 803
BseRI	GAGGAG	3 cut(s)	22, 27, 897
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	686
Bsh1236I	CGCG	3 cut(s)	11, 104, 156
BshFI	GGCC	3 cut(s)	5, 14, 462
BsiHKAI	GWGCWC	2 cut(s)	377, 857
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	180, 335, 665
BslFI	GGGAC	4 cut(s)	73, 175, 465, 516
BslI	CCNNNNNNNGG	6 cut(s)	201, 246, 469, 538, 717, 812
BsmFI	GGGAC	4 cut(s)	73, 175, 465, 516
BsnI	GGCC	3 cut(s)	5, 14, 462
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	377, 857
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	3 cut(s)	294, 346, 389
BspACI	CCGC	7 cut(s)	9, 11, 53, 154, 174, 216, 240
BspANI	GGCC	3 cut(s)	5, 14, 462
BspCNI	CTCAG	2 cut(s)	613, 802
BspEI	TCCGGA	1 cut(s)	664
BspFNI	CGCG	3 cut(s)	11, 104, 156
BspLI	GGNNCC	4 cut(s)	88, 89, 274, 709
BspPI	GGATC	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	9, 128
BssMI	GATC	3 cut(s)	294, 346, 389
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	4 cut(s)	166, 406, 574, 845
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	259, 263
BstDEI	CTNAG	4 cut(s)	579, 621, 789, 932
BstDSI	CCRYGG	2 cut(s)	9, 128
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	3 cut(s)	11, 104, 156
BstKTI	GATC	3 cut(s)	297, 349, 392
BstMBI	GATC	3 cut(s)	294, 346, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	2 cut(s)	675, 804
BstSCI	CCNGG	1 cut(s)	268
BstUI	CGCG	3 cut(s)	11, 104, 156
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	3 cut(s)	5, 14, 462
BtgI	CCRYGG	2 cut(s)	9, 128
BtrI	CACGTC	1 cut(s)	560
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	276, 304
Cac8I	GCNNGC	2 cut(s)	259, 263
Cfr13I	GGNCC	3 cut(s)	13, 87, 944
Cfr42I	CCGCGG	1 cut(s)	12
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	144, 570
CviAII	CATG	4 cut(s)	421, 672, 801, 911
CviQI	GTAC	2 cut(s)	144, 570
DdeI	CTNAG	4 cut(s)	579, 621, 789, 932
DpnI	GATC	3 cut(s)	296, 348, 391
DpnII	GATC	3 cut(s)	294, 346, 389
DraI	TTTAAA	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	87, 944
Eco88I	CYCGRG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	268
FaeI	CATG	4 cut(s)	424, 675, 804, 914
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FaqI	GGGAC	4 cut(s)	73, 175, 465, 516
FatI	CATG	4 cut(s)	420, 671, 800, 910
FauI	CCCGC	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	5 cut(s)	12, 154, 174, 216, 303
FokI	GGATG	1 cut(s)	648
Fsp4HI	GCNGC	5 cut(s)	12, 154, 174, 216, 303
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	5 cut(s)	12, 154, 174, 216, 303
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	3 cut(s)	291, 384, 879
HaeIII	GGCC	3 cut(s)	5, 14, 462
HapII	CCGG	3 cut(s)	180, 335, 665
HgaI	GACGC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	424, 675, 804, 914
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HpaII	CCGG	3 cut(s)	180, 335, 665
HphI	GGTGA	5 cut(s)	32, 194, 368, 596, 836
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	7 cut(s)	83, 249, 322, 622, 807, 838, 849
Hpy188III	TCNNGA	3 cut(s)	519, 665, 858
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	564
HpyAV	CCTTC	2 cut(s)	53, 857
HpyCH4III	ACNGT	4 cut(s)	166, 406, 574, 845
HpyCH4IV	ACGT	2 cut(s)	559, 595
HpyCH4V	TGCA	3 cut(s)	305, 567, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	579, 621, 789, 932
HpySE526I	ACGT	2 cut(s)	559, 595
Hsp92II	CATG	4 cut(s)	424, 675, 804, 914
KflI	GGGWCCC	1 cut(s)	87
Kpn2I	TCCGGA	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	294, 346, 389
LmnI	GCTCC	3 cut(s)	272, 695, 713
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	559, 595
MaeIII	GTNAC	2 cut(s)	105, 574
MalI	GATC	3 cut(s)	296, 348, 391
MboI	GATC	3 cut(s)	294, 346, 389
MboII	GAAGA	4 cut(s)	40, 57, 384, 599
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	2 cut(s)	377, 857
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	112, 466, 614, 647, 808
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	418, 827
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	111, 288, 369, 879
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	3 cut(s)	180, 335, 665
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	3 cut(s)	11, 104, 156
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	3 cut(s)	294, 346, 389
NlaIII	CATG	4 cut(s)	424, 675, 804, 914
NlaIV	GGNNCC	4 cut(s)	88, 89, 274, 709
NmuCI	GTSAC	1 cut(s)	105
NspI	RCATGY	2 cut(s)	675, 804
PciI	ACATGT	1 cut(s)	671
PkrI	GCNGC	5 cut(s)	13, 155, 175, 217, 304
PpuMI	RGGWCCY	1 cut(s)	87
PscI	ACATGT	1 cut(s)	671
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	4 cut(s)	88, 89, 274, 709
PspPI	GGNCC	3 cut(s)	13, 87, 944
PspPPI	RGGWCCY	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	2 cut(s)	145, 571
RsaNI	GTAC	2 cut(s)	144, 570
SacII	CCGCGG	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	111, 288, 369, 879
SatI	GCNGC	5 cut(s)	12, 154, 174, 216, 303
Sau3AI	GATC	3 cut(s)	294, 346, 389
Sau96I	GGNCC	3 cut(s)	13, 87, 944
ScaI	AGTACT	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	377, 857
SfiI	GGCCNNNNNGGCC	1 cut(s)	11
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	87, 944
Sse9I	AATT	5 cut(s)	112, 466, 614, 647, 808
SsiI	CCGC	7 cut(s)	9, 11, 53, 154, 174, 216, 240
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	4 cut(s)	166, 406, 574, 845
TaiI	ACGT	2 cut(s)	562, 598
TaqI	TCGA	1 cut(s)	491
TasI	AATT	5 cut(s)	112, 466, 614, 647, 808
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	4 cut(s)	14, 156, 176, 218
Tru1I	TTAA	4 cut(s)	111, 288, 369, 879
Tru9I	TTAA	4 cut(s)	111, 288, 369, 879
TscAI	CASTG	2 cut(s)	283, 304
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	2 cut(s)	283, 304
VpaK11BI	GGWCC	2 cut(s)	87, 944
XapI	RAATTY	2 cut(s)	614, 647
XceI	RCATGY	2 cut(s)	675, 804
XspI	CTAG	1 cut(s)	222
ZrmI	AGTACT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.