FvH4_7g20860

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005545
Physical Location & Seq
Reverse (-)
16856238 .. 16857577
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20860.t1

Sequence Viewer

Length: 1167 bp
ATGAAGATAAAATTCTGGGCGACGGTGCTGCTCCTAGGGTTTCATGTTTTCAGCTCTTCTTCTCAGAGCACGACCGGATGGTTTAACATAGACTGTGGGAGCGACACTCCACGCGTGGACGCCAACACCTTACTCCAATGGGACACAGACAACGATTTAATCAAATCAGGCATCAAGGTACATATCTCAGCAAAGCAAAAACTTGACGAGATGAACACCCTTCGGTTCTTCCCTACAGGACAACAAAATTGTTACGACTTGAAGGTCTATAAAAAGAAGGTGCGCTACTTGATTCGTGCAGGGTTCTTTTATGGCAACTATGATGGTCTCTCTAGCCCTCCAACGTTTGAGCTTCATCTCGACGGGAAGAAATGGATGACAACGGTCAAAACGTCGATGATAGAAGACCCAGTATATCGTGAAGCCATATATGAGGCTCGATCAGATCATATTAGCCTGTGCGTTGTTCGAGTTAAGGACGGAGGGGTGCCTTTCATATCTTCCATAGAGGTTGTTCCACTGGAGCCTCCGGTTAATCATTATTTGTACTATAGGATGGAAAGTAGTCACACTTTCAATCTAGCAACTAGGGTAAACTTCGGTGGAGATGAAGTAAGGTACACAGCTGGGACTTCACCAGATGAACGGTACAACCGGATATGGACTCGTGGAGAAACTCCACCAAACTGTGAGGTAACAGCTACTGATTCGGATTCCTCGACAGAAAATGATCCTCCTCGTGAGGTGACCAAGCACTCCGTCGAAGCAAAGAGCTTCACTAACATAACCTTGTCCGTTGATATCTCACAAACACCGACTCCACAATCAGCTTATGTTGTGCTCTATTTCGCCGAAGAGAAAAACCTAACATTCAGAGACACCAGACTGATCAATATCTACATCGACAACCATATGAAGTCCGAAGCTGCACTTGACTTCTTCACATGCCAGGTCGTCACCATATACCATGTGATTCCCGTCGGTCCTAGTATGAGTGTGACTTTGGCCCAGGACAAATGGTCCGCCCTACCTCCGTCGATCAGTGCCATGGAAGTGTTCACAACCTTAGATAAAAGCTCCGCTCCTATCCTCCATTGTCGCAGCTTCTTTTGTGCGTTCAGAAACTTCGTTATTTCTTGTATCTGTTTGCTTCTGTATTTAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

389

Amino Acids

44.0

Weight (kDa)

6.08

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 30 - 354 1e-63 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 487
AccBSI CCGCTC 1 cut(s) 1082
AccII CGCG 1 cut(s) 114
AciI CCGC 2 cut(s) 1023, 1080
AclI AACGTT 1 cut(s) 344
AclWI GGATC 1 cut(s) 725
AcsI RAATTY 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 4 cut(s) 180, 548, 620, 650
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 2 cut(s) 262, 577
AhdI GACNNNNNGTC 1 cut(s) 1018
AjnI CCWGG 2 cut(s) 948, 1008
AluBI AGCT 9 cut(s) 54, 352, 626, 701, 774, 830, 926, 1077, 1104
AluI AGCT 9 cut(s) 54, 352, 626, 701, 774, 830, 926, 1077, 1104
Alw21I GWGCWC 2 cut(s) 71, 843
Alw26I GTCTC 2 cut(s) 332, 870
AlwI GGATC 1 cut(s) 725
AlwNI CAGNNNCTG 1 cut(s) 704
AoxI GGCC 1 cut(s) 1005
ApeKI GCWGC 3 cut(s) 28, 926, 1101
ApoI RAATTY 1 cut(s) 11
AspA2I CCTAGG 1 cut(s) 34
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 3 cut(s) 983, 1006, 1020
AsuHPI GGTGA 3 cut(s) 627, 757, 949
AvaII GGWCC 2 cut(s) 983, 1020
AvrII CCTAGG 1 cut(s) 34
BanI GGYRCC 1 cut(s) 487
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
BauI CACGAG 2 cut(s) 666, 738
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 2 cut(s) 71, 843
BbvI GCAGC 3 cut(s) 15, 913, 1113
BccI CCATC 3 cut(s) 72, 317, 550
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 2 cut(s) 950, 1010
BclI TGATCA 1 cut(s) 888
BcoDI GTCTC 2 cut(s) 332, 870
BfaI CTAG 5 cut(s) 35, 333, 581, 588, 987
BfmI CTRYAG 2 cut(s) 234, 550
BisI GCNGC 3 cut(s) 29, 927, 1102
BlnI CCTAGG 1 cut(s) 34
BlsI GCNGC 3 cut(s) 30, 928, 1103
Bme1390I CCNGG 2 cut(s) 950, 1010
Bme18I GGWCC 2 cut(s) 983, 1020
BmeRI GACNNNNNGTC 1 cut(s) 1018
BmgT120I GGNCC 3 cut(s) 983, 1006, 1020
BmiI GGNNCC 2 cut(s) 489, 525
BmrFI CCNGG 2 cut(s) 950, 1010
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 404
BoxI GACNNNNGTC 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpmI CTGGAG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 893
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 34, 1008, 1047
BsaWI WCCGGW 3 cut(s) 74, 529, 654
BsaXI ACNNNNNCTCC 4 cut(s) 597, 627, 802, 832
Bse1I ACTGG 2 cut(s) 410, 525
Bse8I GATNNNNATC 1 cut(s) 893
BseBI CCWGG 2 cut(s) 950, 1010
BseDI CCNNGG 3 cut(s) 34, 1008, 1047
BseGI GGATG 3 cut(s) 83, 381, 561
BseJI GATNNNNATC 1 cut(s) 893
BseMII CTCAG 2 cut(s) 77, 201
BseNI ACTGG 2 cut(s) 410, 525
BseRI GAGGAG 1 cut(s) 726
BseXI GCAGC 3 cut(s) 15, 913, 1113
BseYI CCCAGC 1 cut(s) 626
BsgI GTGCAG 2 cut(s) 318, 912
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 1007
BshNI GGYRCC 1 cut(s) 487
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 71, 843
BsiSI CCGG 3 cut(s) 75, 530, 655
BslFI GGGAC 2 cut(s) 155, 643
BsmAI GTCTC 2 cut(s) 332, 870
BsmFI GGGAC 2 cut(s) 155, 643
BsnI GGCC 1 cut(s) 1007
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 71, 843
Bsp143I GATC 5 cut(s) 440, 445, 730, 888, 1038
Bsp19I CCATGG 1 cut(s) 1047
BspACI CCGC 2 cut(s) 1023, 1080
BspANI GGCC 1 cut(s) 1007
BspCNI CTCAG 2 cut(s) 76, 200
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 489, 525
BspPI GGATC 1 cut(s) 725
BspQI GCTCTTC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 487
BspTNI GGTCTC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 1082
BsrI ACTGG 2 cut(s) 410, 525
BssECI CCNNGG 3 cut(s) 34, 1008, 1047
BssMI GATC 5 cut(s) 440, 445, 730, 888, 1038
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 2 cut(s) 666, 738
BssT1I CCWWGG 2 cut(s) 34, 1047
Bst2BI CACGAG 2 cut(s) 666, 738
Bst2UI CCWGG 2 cut(s) 950, 1010
Bst4CI ACNGT 5 cut(s) 25, 95, 385, 648, 689
Bst6I CTCTTC 2 cut(s) 61, 849
BstACI GRCGYC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 63, 187, 1066
BstDSI CCRYGG 1 cut(s) 1047
BstEII GGTNACC 1 cut(s) 745
BstF5I GGATG 3 cut(s) 83, 381, 561
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 5 cut(s) 443, 448, 733, 891, 1041
BstMAI GTCTC 2 cut(s) 332, 870
BstMBI GATC 5 cut(s) 440, 445, 730, 888, 1038
BstMCI CGRYCG 1 cut(s) 75
BstNI CCWGG 2 cut(s) 950, 1010
BstNSI RCATGY 1 cut(s) 948
BstPAI GACNNNNGTC 1 cut(s) 383
BstPI GGTNACC 1 cut(s) 745
BstSCI CCNGG 2 cut(s) 948, 1008
BstSFI CTRYAG 2 cut(s) 234, 550
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 15, 913, 1113
BstV2I GAAGAC 1 cut(s) 411
BsuRI GGCC 1 cut(s) 1007
BtgI CCRYGG 1 cut(s) 1047
BtsCI GGATG 3 cut(s) 83, 381, 561
BtsIMutI CAGTG 2 cut(s) 518, 1048
CaiI CAGNNNCTG 1 cut(s) 704
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 3 cut(s) 983, 1006, 1020
CseI GACGC 1 cut(s) 128
Csp6I GTAC 4 cut(s) 179, 547, 619, 649
CviAII CATG 4 cut(s) 44, 945, 968, 1048
CviQI GTAC 4 cut(s) 179, 547, 619, 649
DdeI CTNAG 3 cut(s) 63, 187, 1066
DpnI GATC 5 cut(s) 442, 447, 732, 890, 1040
DpnII GATC 5 cut(s) 440, 445, 730, 888, 1038
DrdI GACNNNNNNGTC 1 cut(s) 263
DriI GACNNNNNGTC 1 cut(s) 1018
DseDI GACNNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 2 cut(s) 61, 849
Eam1105I GACNNNNNGTC 1 cut(s) 1018
EarI CTCTTC 2 cut(s) 61, 849
EciI GGCGGA 1 cut(s) 1012
Eco130I CCWWGG 2 cut(s) 34, 1047
Eco31I GGTCTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 983, 1020
Eco91I GGTNACC 1 cut(s) 745
EcoO65I GGTNACC 1 cut(s) 745
EcoRII CCWGG 2 cut(s) 948, 1008
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 2 cut(s) 34, 1047
ErhI CCWWGG 2 cut(s) 34, 1047
FaeI CATG 4 cut(s) 47, 948, 971, 1051
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FaqI GGGAC 2 cut(s) 155, 643
FatI CATG 4 cut(s) 43, 944, 967, 1047
FauNDI CATATG 1 cut(s) 912
FbaI TGATCA 1 cut(s) 888
Fnu4HI GCNGC 3 cut(s) 29, 927, 1102
FokI GGATG 3 cut(s) 90, 388, 568
Fsp4HI GCNGC 3 cut(s) 29, 927, 1102
FspBI CTAG 5 cut(s) 35, 333, 581, 588, 987
GlaI GCGC 1 cut(s) 284
GluI GCNGC 3 cut(s) 29, 927, 1102
GsaI CCCAGC 1 cut(s) 630
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 1 cut(s) 1007
HapII CCGG 3 cut(s) 75, 530, 655
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 47, 948, 971, 1051
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 6 cut(s) 292, 664, 707, 713, 817, 973
HpaII CCGG 3 cut(s) 75, 530, 655
HphI GGTGA 3 cut(s) 627, 757, 949
Hpy166II GTNNAC 4 cut(s) 118, 595, 621, 1059
Hpy188I TCNGA 6 cut(s) 66, 445, 712, 875, 922, 1121
Hpy188III TCNNGA 3 cut(s) 359, 419, 740
Hpy8I GTNNAC 4 cut(s) 118, 595, 621, 1059
Hpy99I CGWCG 6 cut(s) 25, 365, 397, 764, 983, 1039
HpyAV CCTTC 3 cut(s) 230, 256, 271
HpyCH4III ACNGT 5 cut(s) 25, 95, 385, 648, 689
HpyCH4IV ACGT 2 cut(s) 344, 392
HpyCH4V TGCA 2 cut(s) 299, 929
HpyF3I CTNAG 3 cut(s) 63, 187, 1066
HpySE526I ACGT 2 cut(s) 344, 392
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 47, 948, 971, 1051
HspAI GCGC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 5 cut(s) 440, 445, 730, 888, 1038
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 5 cut(s) 36, 99, 523, 1082, 1087
Lsp1109I GCAGC 3 cut(s) 15, 913, 1113
LweI GCATC 1 cut(s) 180
MaeI CTAG 5 cut(s) 35, 333, 581, 588, 987
MaeII ACGT 2 cut(s) 344, 392
MaeIII GTNAC 6 cut(s) 251, 566, 694, 745, 955, 997
MalI GATC 5 cut(s) 442, 447, 732, 890, 1040
MbiI CCGCTC 1 cut(s) 1082
MboI GATC 5 cut(s) 440, 445, 730, 888, 1038
MboII GAAGA 9 cut(s) 16, 48, 51, 220, 379, 416, 492, 866, 931
MhlI GDGCHC 2 cut(s) 71, 843
MluCI AATT 2 cut(s) 11, 247
MluI ACGCGT 1 cut(s) 112
MlyI GAGTC 2 cut(s) 658, 811
MmeI TCCRAC 1 cut(s) 365
MseI TTAA 4 cut(s) 84, 158, 474, 534
MslI CAYNNNNRTG 1 cut(s) 1052
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 3 cut(s) 75, 530, 655
MspR9I CCNGG 2 cut(s) 950, 1010
MvaI CCWGG 2 cut(s) 950, 1010
MvnI CGCG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 1047
NdeI CATATG 1 cut(s) 912
NdeII GATC 5 cut(s) 440, 445, 730, 888, 1038
NlaIII CATG 4 cut(s) 47, 948, 971, 1051
NlaIV GGNNCC 2 cut(s) 489, 525
NmuCI GTSAC 4 cut(s) 566, 745, 955, 997
NspI RCATGY 1 cut(s) 948
PciSI GCTCTTC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 2 cut(s) 389, 716
PfeI GAWTC 4 cut(s) 292, 707, 713, 973
PkrI GCNGC 3 cut(s) 30, 928, 1103
PleI GAGTC 2 cut(s) 658, 811
PpsI GAGTC 2 cut(s) 658, 811
PshAI GACNNNNGTC 1 cut(s) 383
Psp1406I AACGTT 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 948, 1008
PspEI GGTNACC 1 cut(s) 745
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 2 cut(s) 948, 1008
PspN4I GGNNCC 2 cut(s) 489, 525
PspPI GGNCC 3 cut(s) 983, 1006, 1020
PstNI CAGNNNCTG 1 cut(s) 704
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 4 cut(s) 180, 548, 620, 650
RsaNI GTAC 4 cut(s) 179, 547, 619, 649
RseI CAYNNNNRTG 1 cut(s) 1052
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 4 cut(s) 84, 158, 474, 534
SatI GCNGC 3 cut(s) 29, 927, 1102
Sau3AI GATC 5 cut(s) 440, 445, 730, 888, 1038
Sau96I GGNCC 3 cut(s) 983, 1006, 1020
SchI GAGTC 2 cut(s) 658, 811
ScrFI CCNGG 2 cut(s) 950, 1010
SduI GDGCHC 2 cut(s) 71, 843
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 2 cut(s) 234, 550
SinI GGWCC 2 cut(s) 983, 1020
SmiMI CAYNNNNRTG 1 cut(s) 1052
Sse9I AATT 2 cut(s) 11, 247
SsiI CCGC 2 cut(s) 1023, 1080
SspMI CTAG 5 cut(s) 35, 333, 581, 588, 987
StyD4I CCNGG 2 cut(s) 948, 1008
StyI CCWWGG 2 cut(s) 34, 1047
TaaI ACNGT 5 cut(s) 25, 95, 385, 648, 689
TaiI ACGT 2 cut(s) 347, 395
TaqI TCGA 8 cut(s) 360, 395, 439, 469, 719, 762, 903, 1037
TaqII GACCGA 1 cut(s) 971
TasI AATT 2 cut(s) 11, 247
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 4 cut(s) 292, 707, 713, 973
Tru1I TTAA 4 cut(s) 84, 158, 474, 534
Tru9I TTAA 4 cut(s) 84, 158, 474, 534
TscAI CASTG 2 cut(s) 525, 1048
TseFI GTSAC 4 cut(s) 566, 745, 955, 997
TseI GCWGC 3 cut(s) 28, 926, 1101
Tsp45I GTSAC 4 cut(s) 566, 745, 955, 997
TspDTI ATGAA 8 cut(s) 17, 32, 227, 344, 484, 624, 657, 929
TspGWI ACGGA 4 cut(s) 495, 748, 784, 1023
TspRI CASTG 2 cut(s) 525, 1048
VpaK11BI GGWCC 2 cut(s) 983, 1020
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 948
XmaJI CCTAGG 1 cut(s) 34
XspI CTAG 5 cut(s) 35, 333, 581, 588, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.