Rroxscaffold_4G00291460

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005545
Physical Location & Seq
Forward (+)
11896532 .. 11898325
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291460.1

Sequence Viewer

Length: 996 bp
ATGGACACCAGTAGTGCTGCTCCTGGCTTTTCATCTGCTTGGTGCTTCTTCTCAGAGACTGATCTTGTTGATGTATTTCGTGTTGATGCAACGTTTTTGAGTCACGTCATGTTGATCCAAGGGTTCTATCTTGAACACTCTTCAGCCACTATTGGATGGTTGAACATCGATTGCGGGAACAGTGTTGTACGCGTAGATCCCACAAACTTACTGACATGGGTCACAGACAAGGACTTGATCCAAACGGGCATCAACAAAGAAGTTCCACAAAATCAGTCCCTTGAAGAAATGAACACCCTCCTATCATTCACAAATCAGACACAGCAAAATTGCTATGCTTTGCCTGGCAATAAGCAAACCGTACGCTACCTGATTCGGGTTGGGTTCTACTATGGCAACTATGATGGTCTCTCGAACCCTCCATCGTTCGAAATTCATATCGACGGCCAAAAATGGTCGACGGTCAAAACATCAACCGTGGGAGAAGGGCCAATATACCATGAAGCCTTGTATGAAACTCAAGGGTCAGGTTCTATTAGTCTTTGCGTTGTGCAAGTTAAGGATGGAGGGGTTCCCTTTATTTCTTCAATAGAAGCTGTTCCGTTATCGGCTTCTTCTAATCCATTATACCCTAAGATGGAAACAAACGACACTTTCGATTTAGTATCCAGGATAAACTTTGGTGGTGATGAAATAAGGTTCACAGGGTTATTATCAGAAAACTATAACCGAATATGGACACGAGGAACAACTCCGCCAAACTGCAACGAAGTTTCTACCTTACCAGATATACTCTCCCCAGAAAATGACCCTCCTGTTTCAGTGTTGCGCACTGCCATAGAATCAATAGACCTTACCCATCCAATAACCTTGTCCGTTAGCCTCTCGCAAACAACCCCCAGTCAGCTTATTTTGTGCTCTATTTTACCGAAACGACAAGCCTACCTAAACCAGGCGACACCAGAATCATTCAGATCAACATCAATGGTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

331

Amino Acids

36.53

Weight (kDa)

4.64

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 56 - 301 6e-45 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 830
AccI GTMKAC 1 cut(s) 458
AccII CGCG 1 cut(s) 192
AciI CCGC 2 cut(s) 174, 755
AclI AACGTT 1 cut(s) 92
AclWI GGATC 3 cut(s) 109, 191, 232
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 2 cut(s) 189, 363
AfiI CCNNNNNNNGG 3 cut(s) 376, 637, 952
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 4 cut(s) 134, 163, 284, 588
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 4 cut(s) 22, 343, 668, 951
AluBI AGCT 2 cut(s) 596, 907
AluI AGCT 2 cut(s) 596, 907
Alw21I GWGCWC 1 cut(s) 920
Alw26I GTCTC 2 cut(s) 50, 413
AlwI GGATC 3 cut(s) 109, 191, 232
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 2 cut(s) 445, 488
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 698
AsuII TTCGAA 1 cut(s) 429
BauI CACGAG 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 920
BbvI GCAGC 1 cut(s) 4
BccI CCATC 6 cut(s) 150, 398, 430, 557, 631, 867
BceAI ACGGC 1 cut(s) 460
BciT130I CCWGG 4 cut(s) 24, 345, 670, 953
BciVI GTATCC 1 cut(s) 676
BcoDI GTCTC 2 cut(s) 50, 413
BfuI GTATCC 1 cut(s) 676
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 4 cut(s) 24, 345, 670, 953
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 573
BmrFI CCNGG 4 cut(s) 24, 345, 670, 953
BmrI ACTGGG 1 cut(s) 894
BmsI GCATC 2 cut(s) 76, 258
BmuI ACTGGG 1 cut(s) 894
BoxI GACNNNNGTC 1 cut(s) 218
Bpu14I TTCGAA 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 504
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 979
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 118, 477
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 637, 952
Bse1I ACTGG 2 cut(s) 9, 900
Bse8I GATNNNNATC 1 cut(s) 979
BseBI CCWGG 4 cut(s) 24, 345, 670, 953
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 118, 477
BseGI GGATG 3 cut(s) 161, 568, 859
BseJI GATNNNNATC 1 cut(s) 979
BseLI CCNNNNNNNGG 3 cut(s) 376, 637, 952
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 9, 900
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 447, 490
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 920
BsiWI CGTACG 1 cut(s) 361
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 3 cut(s) 376, 637, 952
BsmAI GTCTC 2 cut(s) 50, 413
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 2 cut(s) 447, 490
Bso31I GGTCTC 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 920
Bsp143I GATC 5 cut(s) 61, 114, 196, 237, 974
BspACI CCGC 2 cut(s) 174, 755
BspANI GGCC 2 cut(s) 447, 490
BspCNI CTCAG 1 cut(s) 65
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 573
BspPI GGATC 3 cut(s) 109, 191, 232
BspT104I TTCGAA 1 cut(s) 429
BspTNI GGTCTC 1 cut(s) 413
BsrI ACTGG 2 cut(s) 9, 900
BssECI CCNNGG 2 cut(s) 118, 477
BssMI GATC 5 cut(s) 61, 114, 196, 237, 974
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 118
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 4 cut(s) 24, 345, 670, 953
Bst4CI ACNGT 4 cut(s) 182, 361, 463, 478
Bst6I CTCTTC 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 429
BstDEI CTNAG 2 cut(s) 52, 633
BstDSI CCRYGG 1 cut(s) 477
BstENI CCTNNNNNAGG 1 cut(s) 950
BstF5I GGATG 3 cut(s) 161, 568, 859
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 5 cut(s) 64, 117, 199, 240, 977
BstMAI GTCTC 2 cut(s) 50, 413
BstMBI GATC 5 cut(s) 61, 114, 196, 237, 974
BstNI CCWGG 4 cut(s) 24, 345, 670, 953
BstPAI GACNNNNGTC 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 22, 343, 668, 951
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 168
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 2 cut(s) 447, 490
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 477
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 3 cut(s) 161, 568, 859
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 3 cut(s) 187, 828, 831
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 1 cut(s) 488
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 2 cut(s) 188, 362
CviAII CATG 3 cut(s) 109, 216, 500
CviQI GTAC 2 cut(s) 188, 362
DdeI CTNAG 2 cut(s) 52, 633
DpnI GATC 5 cut(s) 63, 116, 198, 239, 976
DpnII GATC 5 cut(s) 61, 114, 196, 237, 974
EaeI YGGCCR 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
EciI GGCGGA 1 cut(s) 744
Eco130I CCWWGG 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 126
EcoNI CCTNNNNNAGG 1 cut(s) 950
EcoRII CCWGG 4 cut(s) 22, 343, 668, 951
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 3 cut(s) 112, 219, 503
FaqI GGGAC 1 cut(s) 262
FatI CATG 3 cut(s) 108, 215, 499
FauI CCCGC 1 cut(s) 167
FauNDI CATATG 1 cut(s) 992
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 3 cut(s) 168, 575, 846
Fsp4HI GCNGC 1 cut(s) 18
FspI TGCGCA 1 cut(s) 830
GlaI GCGC 1 cut(s) 830
GluI GCNGC 1 cut(s) 18
HaeIII GGCC 2 cut(s) 447, 490
HhaI GCGC 1 cut(s) 831
Hin1II CATG 3 cut(s) 112, 219, 503
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 4 cut(s) 100, 373, 842, 965
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 2 cut(s) 459, 702
Hpy188I TCNGA 4 cut(s) 55, 318, 718, 974
Hpy188III TCNNGA 2 cut(s) 131, 412
Hpy8I GTNNAC 2 cut(s) 459, 702
Hpy99I CGWCG 2 cut(s) 446, 463
HpyAV CCTTC 1 cut(s) 479
HpyCH4III ACNGT 4 cut(s) 182, 361, 463, 478
HpyCH4IV ACGT 2 cut(s) 92, 105
HpyCH4V TGCA 3 cut(s) 89, 553, 765
HpyF3I CTNAG 2 cut(s) 52, 633
HpySE526I ACGT 2 cut(s) 92, 105
Hsp92II CATG 3 cut(s) 112, 219, 503
HspAI GCGC 1 cut(s) 829
Kzo9I GATC 5 cut(s) 61, 114, 196, 237, 974
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 2 cut(s) 76, 258
MaeII ACGT 2 cut(s) 92, 105
MaeIII GTNAC 2 cut(s) 101, 220
MalI GATC 5 cut(s) 63, 116, 198, 239, 976
MboI GATC 5 cut(s) 61, 114, 196, 237, 974
MboII GAAGA 5 cut(s) 40, 132, 296, 576, 606
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 920
MluCI AATT 2 cut(s) 328, 432
MluI ACGCGT 1 cut(s) 190
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 6 cut(s) 308, 429, 560, 737, 822, 893
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 1 cut(s) 558
MspR9I CCNGG 4 cut(s) 24, 345, 670, 953
MvaI CCWGG 4 cut(s) 24, 345, 670, 953
MvnI CGCG 1 cut(s) 192
NdeI CATATG 1 cut(s) 992
NdeII GATC 5 cut(s) 61, 114, 196, 237, 974
NlaIII CATG 3 cut(s) 112, 219, 503
NlaIV GGNNCC 1 cut(s) 573
NmuCI GTSAC 2 cut(s) 101, 220
NsbI TGCGCA 1 cut(s) 830
NspV TTCGAA 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 3 cut(s) 373, 842, 965
Pfl23II CGTACG 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 668
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PshAI GACNNNNGTC 1 cut(s) 218
Psp1406I AACGTT 1 cut(s) 92
Psp6I CCWGG 4 cut(s) 22, 343, 668, 951
PspGI CCWGG 4 cut(s) 22, 343, 668, 951
PspLI CGTACG 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 573
PspPI GGNCC 1 cut(s) 488
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 2 cut(s) 189, 363
RsaNI GTAC 2 cut(s) 188, 362
SalI GTCGAC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 5 cut(s) 61, 114, 196, 237, 974
Sau96I GGNCC 1 cut(s) 488
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 4 cut(s) 24, 345, 670, 953
SduI GDGCHC 1 cut(s) 920
SfaNI GCATC 2 cut(s) 76, 258
SfuI TTCGAA 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
Sse9I AATT 2 cut(s) 328, 432
SsiI CCGC 2 cut(s) 174, 755
StyD4I CCNGG 4 cut(s) 22, 343, 668, 951
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 4 cut(s) 182, 361, 463, 478
TaiI ACGT 2 cut(s) 95, 108
TaqI TCGA 6 cut(s) 168, 413, 429, 441, 458, 657
TasI AATT 2 cut(s) 328, 432
TfiI GAWTC 3 cut(s) 373, 842, 965
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 3 cut(s) 187, 828, 838
TseFI GTSAC 2 cut(s) 101, 220
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 2 cut(s) 101, 220
TspDTI ATGAA 6 cut(s) 21, 305, 425, 516, 528, 705
TspGWI ACGGA 2 cut(s) 591, 865
TspRI CASTG 3 cut(s) 187, 828, 838
XagI CCTNNNNNAGG 1 cut(s) 950
XapI RAATTY 1 cut(s) 432
XmiI GTMKAC 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.