Rw1G029150

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005545
Physical Location & Seq
Reverse (-)
56795700 .. 56797853
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029150.1

Sequence Viewer

Length: 1113 bp
ATGAGGAATAAAAAATCCTGGACAGCAGTAGTGGTTTTTCTGGCTTTTTATCTGCTCAAAGCTTCTTCTCAGATCACTATTGGATGGTTGAACATCGATTGCGGGAACAGTGTTGTACGTGTAGATCCCACAAACTTACTGACATGGGTCACAGACAAGGATTTGATCCAAACGGGCATCAACAAAGAAGTTCCACAAAAGCAATCACTTGAAGAAATGAACACCCTCCGTTCATTCCCAAATCAGACACCACAAAATTGCTATGCTTTGCCAGTCAATAAGCAAACCGTACGCTACCTGATTCGGGTTGGGTTCTACTATGGCAACTATGATGGTCTCTCAAACCCTCCATCGTTCGATATTCATATCGATGGTCAAAAATGGTCGACAGTCAAAACATCAACTTTGGGAGAAGGGCCAATGTATCATGAAGCCTTGTATGAAACTCAAGGGTCAGGTTCTATTAGTCTTTGCGTTGTGCAAGTTAAGGATGGAGGGGTTCCCTTTATTTCTTCAATAGAAGCTGTTCCGTTATTGGCTCCTTTTAATCCATTGTACCCTGAGATGGAGACAAACAACACTTTCGATTTAGTATCCAGGATAAACTTTGGTGGTGATGAAATAAGGTTCACAGGGTTATTATCAGAAAACTATAACCGAATATGGACACGAGGAACAACTCCGCCAAACTGCAACGAAGTTTCTACCTTACCAGATATACTCTCCCCAGAAAATGACCCTCCTATTTCAGTGTTGCGCACCGCCATAGAATCAATAGACCTTACCCATCCAATAACCTTGCCCGTTAGCCTCTCGCAAACAAACCCCCAGTCAGCTTACTTTGTGCTCTATTTTACCGAAACGACAAGCCTACCTAAACCAGGCGACACCAGAATAATTCAGATCAACATCAATGGTCAAATGAAATCCACAGTGACACTTGAGTTCACTAAATGCAAGGTGATCACATTATACCCTGTGATCGTCGAGGGTACCACAATTAACGTGACATTGGCCTCAGCTAGTAGCTCCACCCTACCTCCGATCATCAGCAAGAAAAAAGTTAATGTTGGAATAAATTCAATTAACGATCCCTTTTTTTTTTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

370

Amino Acids

41.12

Weight (kDa)

5.53

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 32 - 351 1.1e-60 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 758
Acc65I GGTACC 1 cut(s) 992
AccB1I GGYRCC 1 cut(s) 992
AccI GTMKAC 1 cut(s) 386
AciI CCGC 3 cut(s) 102, 683, 762
AclWI GGATC 3 cut(s) 119, 160, 1085
AcsI RAATTY 1 cut(s) 1078
AfaI GTAC 4 cut(s) 117, 291, 557, 994
AfiI CCNNNNNNNGG 3 cut(s) 304, 565, 881
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 4 cut(s) 91, 212, 516, 1083
AjnI CCWGG 3 cut(s) 17, 596, 880
AluBI AGCT 5 cut(s) 62, 524, 836, 1022, 1029
AluI AGCT 5 cut(s) 62, 524, 836, 1022, 1029
Alw21I GWGCWC 1 cut(s) 849
Alw26I GTCTC 2 cut(s) 341, 563
AlwI GGATC 3 cut(s) 119, 160, 1085
AoxI GGCC 2 cut(s) 416, 1014
ApoI RAATTY 1 cut(s) 1078
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
Asp700I GAANNNNTTC 2 cut(s) 525, 1078
Asp718I GGTACC 1 cut(s) 992
AspLEI GCGC 1 cut(s) 759
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 2 cut(s) 626, 973
BanI GGYRCC 1 cut(s) 992
BauI CACGAG 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 849
BbvCI CCTCAGC 1 cut(s) 1018
BccI CCATC 7 cut(s) 78, 326, 358, 365, 485, 559, 795
BciT130I CCWGG 3 cut(s) 19, 598, 882
BciVI GTATCC 1 cut(s) 604
BclI TGATCA 1 cut(s) 963
BcoDI GTCTC 2 cut(s) 341, 563
BfaI CTAG 1 cut(s) 1023
BfuI GTATCC 1 cut(s) 604
Bme1390I CCNGG 3 cut(s) 19, 598, 882
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 3 cut(s) 501, 540, 994
BmrFI CCNGG 3 cut(s) 19, 598, 882
BmrI ACTGGG 1 cut(s) 823
BmsI GCATC 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 823
BoxI GACNNNNGTC 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 1018
BpuEI CTTGAG 2 cut(s) 432, 962
Bsa29I ATCGAT 2 cut(s) 96, 369
BsaAI YACGTR 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 908
BsaI GGTCTC 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 1024, 1054
Bsc4I CCNNNNNNNGG 3 cut(s) 304, 565, 881
Bse1I ACTGG 2 cut(s) 272, 829
Bse8I GATNNNNATC 1 cut(s) 908
BseBI CCWGG 3 cut(s) 19, 598, 882
BseCI ATCGAT 2 cut(s) 96, 369
BseGI GGATG 3 cut(s) 89, 496, 787
BseJI GATNNNNATC 1 cut(s) 908
BseLI CCNNNNNNNGG 3 cut(s) 304, 565, 881
BseMII CTCAG 3 cut(s) 83, 552, 1032
BseNI ACTGG 2 cut(s) 272, 829
BshFI GGCC 2 cut(s) 418, 1016
BshNI GGYRCC 1 cut(s) 992
BshVI ATCGAT 2 cut(s) 96, 369
BsiHKAI GWGCWC 1 cut(s) 849
BsiWI CGTACG 1 cut(s) 289
BslI CCNNNNNNNGG 3 cut(s) 304, 565, 881
BsmAI GTCTC 2 cut(s) 341, 563
BsnI GGCC 2 cut(s) 418, 1016
Bso31I GGTCTC 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 849
Bsp143I GATC 8 cut(s) 72, 124, 165, 903, 963, 981, 1044, 1090
BspACI CCGC 3 cut(s) 102, 683, 762
BspANI GGCC 2 cut(s) 418, 1016
BspCNI CTCAG 3 cut(s) 82, 553, 1031
BspDI ATCGAT 2 cut(s) 96, 369
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 3 cut(s) 501, 540, 994
BspPI GGATC 3 cut(s) 119, 160, 1085
BspT107I GGYRCC 1 cut(s) 992
BspTNI GGTCTC 1 cut(s) 341
BsrI ACTGG 2 cut(s) 272, 829
BssMI GATC 8 cut(s) 72, 124, 165, 903, 963, 981, 1044, 1090
BssSI CACGAG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 669
Bst2UI CCWGG 3 cut(s) 19, 598, 882
Bst4CI ACNGT 4 cut(s) 110, 289, 391, 934
BstBAI YACGTR 1 cut(s) 119
BstDEI CTNAG 3 cut(s) 69, 561, 1018
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 3 cut(s) 89, 496, 787
BstHHI GCGC 1 cut(s) 759
BstKTI GATC 8 cut(s) 75, 127, 168, 906, 966, 984, 1047, 1093
BstMAI GTCTC 2 cut(s) 341, 563
BstMBI GATC 8 cut(s) 72, 124, 165, 903, 963, 981, 1044, 1090
BstNI CCWGG 3 cut(s) 19, 598, 882
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 3 cut(s) 17, 596, 880
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu15I ATCGAT 2 cut(s) 96, 369
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 2 cut(s) 418, 1016
BsuTUI ATCGAT 2 cut(s) 96, 369
BtsCI GGATG 3 cut(s) 89, 496, 787
BtsIMutI CAGTG 3 cut(s) 115, 756, 939
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 759
Cfr13I GGNCC 1 cut(s) 416
ClaI ATCGAT 2 cut(s) 96, 369
Csp6I GTAC 4 cut(s) 116, 290, 556, 993
CviAII CATG 2 cut(s) 144, 428
CviQI GTAC 4 cut(s) 116, 290, 556, 993
DdeI CTNAG 3 cut(s) 69, 561, 1018
DpnI GATC 8 cut(s) 74, 126, 167, 905, 965, 983, 1046, 1092
DpnII GATC 8 cut(s) 72, 124, 165, 903, 963, 981, 1044, 1090
EciI GGCGGA 1 cut(s) 672
Eco31I GGTCTC 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoRII CCWGG 3 cut(s) 17, 596, 880
FaeI CATG 2 cut(s) 147, 431
FatI CATG 2 cut(s) 143, 427
FauI CCCGC 1 cut(s) 95
FbaI TGATCA 1 cut(s) 963
FblI GTMKAC 1 cut(s) 386
FokI GGATG 3 cut(s) 96, 503, 774
FspBI CTAG 1 cut(s) 1023
FspI TGCGCA 1 cut(s) 758
GlaI GCGC 1 cut(s) 758
HaeIII GGCC 2 cut(s) 418, 1016
HhaI GCGC 1 cut(s) 759
Hin1II CATG 2 cut(s) 147, 431
Hin6I GCGC 1 cut(s) 757
HinP1I GCGC 1 cut(s) 757
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 2 cut(s) 301, 770
HphI GGTGA 2 cut(s) 626, 973
Hpy166II GTNNAC 3 cut(s) 387, 630, 948
Hpy188I TCNGA 5 cut(s) 72, 246, 646, 903, 1044
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 3 cut(s) 387, 630, 948
Hpy99I CGWCG 1 cut(s) 989
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 4 cut(s) 110, 289, 391, 934
HpyCH4IV ACGT 2 cut(s) 118, 1005
HpyCH4V TGCA 3 cut(s) 481, 693, 957
HpyF3I CTNAG 3 cut(s) 69, 561, 1018
HpySE526I ACGT 2 cut(s) 118, 1005
Hsp92II CATG 2 cut(s) 147, 431
HspAI GCGC 1 cut(s) 757
KpnI GGTACC 1 cut(s) 996
Ksp22I TGATCA 1 cut(s) 963
Kzo9I GATC 8 cut(s) 72, 124, 165, 903, 963, 981, 1044, 1090
LmnI GCTCC 2 cut(s) 544, 1034
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 1023
MaeII ACGT 2 cut(s) 118, 1005
MaeIII GTNAC 3 cut(s) 148, 934, 1006
MalI GATC 8 cut(s) 74, 126, 167, 905, 965, 983, 1046, 1092
MboI GATC 8 cut(s) 72, 124, 165, 903, 963, 981, 1044, 1090
MboII GAAGA 3 cut(s) 57, 224, 504
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 849
MluCI AATT 5 cut(s) 256, 897, 999, 1078, 1083
MmeI TCCRAC 1 cut(s) 1051
MnlI CCTC 9 cut(s) 236, 357, 488, 665, 750, 821, 982, 1027, 1050
MroXI GAANNNNTTC 2 cut(s) 525, 1078
MseI TTAA 6 cut(s) 486, 546, 1002, 1065, 1086, 1111
MslI CAYNNNNRTG 1 cut(s) 369
MspR9I CCNGG 3 cut(s) 19, 598, 882
MvaI CCWGG 3 cut(s) 19, 598, 882
NdeII GATC 8 cut(s) 72, 124, 165, 903, 963, 981, 1044, 1090
NlaIII CATG 2 cut(s) 147, 431
NlaIV GGNNCC 3 cut(s) 501, 540, 994
NmuCI GTSAC 3 cut(s) 148, 934, 1006
NsbI TGCGCA 1 cut(s) 758
PagI TCATGA 1 cut(s) 427
PdmI GAANNNNTTC 2 cut(s) 525, 1078
PfeI GAWTC 2 cut(s) 301, 770
Pfl23II CGTACG 1 cut(s) 289
PfoI TCCNGGA 2 cut(s) 17, 596
Ppu21I YACGTR 1 cut(s) 119
PshAI GACNNNNGTC 1 cut(s) 146
Psp6I CCWGG 3 cut(s) 17, 596, 880
PspGI CCWGG 3 cut(s) 17, 596, 880
PspLI CGTACG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 501, 540, 994
PspPI GGNCC 1 cut(s) 416
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 4 cut(s) 117, 291, 557, 994
RsaNI GTAC 4 cut(s) 116, 290, 556, 993
RseI CAYNNNNRTG 1 cut(s) 369
SalI GTCGAC 1 cut(s) 385
SaqAI TTAA 6 cut(s) 486, 546, 1002, 1065, 1086, 1111
Sau3AI GATC 8 cut(s) 72, 124, 165, 903, 963, 981, 1044, 1090
Sau96I GGNCC 1 cut(s) 416
ScrFI CCNGG 3 cut(s) 19, 598, 882
SduI GDGCHC 1 cut(s) 849
SfaNI GCATC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 447, 941
SmoI CTYRAG 2 cut(s) 447, 941
Sse9I AATT 5 cut(s) 256, 897, 999, 1078, 1083
SsiI CCGC 3 cut(s) 102, 683, 762
SspMI CTAG 1 cut(s) 1023
StyD4I CCNGG 3 cut(s) 17, 596, 880
TaaI ACNGT 4 cut(s) 110, 289, 391, 934
TaiI ACGT 2 cut(s) 121, 1008
TaqI TCGA 6 cut(s) 96, 357, 369, 386, 585, 987
TasI AATT 5 cut(s) 256, 897, 999, 1078, 1083
TfiI GAWTC 2 cut(s) 301, 770
Tru1I TTAA 6 cut(s) 486, 546, 1002, 1065, 1086, 1111
Tru9I TTAA 6 cut(s) 486, 546, 1002, 1065, 1086, 1111
TscAI CASTG 3 cut(s) 115, 756, 939
TseFI GTSAC 3 cut(s) 148, 934, 1006
Tsp45I GTSAC 3 cut(s) 148, 934, 1006
TspDTI ATGAA 7 cut(s) 222, 233, 353, 444, 456, 633, 938
TspGWI ACGGA 2 cut(s) 218, 519
TspRI CASTG 3 cut(s) 115, 756, 939
XagI CCTNNNNNAGG 1 cut(s) 879
XapI RAATTY 1 cut(s) 1078
XmiI GTMKAC 1 cut(s) 386
XmnI GAANNNNTTC 2 cut(s) 525, 1078
XspI CTAG 1 cut(s) 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.