Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005545

Physical Location & Seq

Genomic Coordinates Forward (+)

43826322 .. 43826932

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0319600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGACCTTGTGTCTGGAGAGTGGTCTGGTTGGAGTAGTGGTTGCGGGGCGACGGAGATGCACACCAGAGAGCCGGAAGGTGTAAGGCAGAGGCAGGAAGATGGCAGGAGGGTGAAGCCAGTGTCGCCTTGCCTTTGGGAGGAGCATGGAGGGCCTGCTCGGTGTTTCGAGGTGCTGATACTGGCTCAGAGGTCGCCGATTGTTGATGGTAGCGTGGGAGCAGCGCCGAGACCCATTGTGTCTAGATCAGATCGGTTGATCCCGATCTGGGTTGAGTGCTTCGTTTTCGACCTGAGGAAGGACGGCGTGGCTTGCTGGAGGAAGGTGTTAGCTGTCGGGTCGTGTGTACTACAAGATGTGGCAGAGACAATCTTCGCTTCGGCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

129

Amino Acids

14.21

Weight (kDa)

5.68

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20860
malus_domestica	MD01G1117700.v1.1
prunus_persica	Prupe.2G225100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365101 RchiOBHm_Chr7g0221441
rosa_laevigata	RLG00000027442 RLG00000027443 RLG00000027444
rosa_multiflora	Rmu_ssc0000112.1_g000004
rosa_roxburghii	Rroxscaffold_4G00291450 Rroxscaffold_4G00291460 Rroxscaffold_4G00291470 Rroxscaffold_4G00291480
rosa_rugosa	Rorug01G0319600 Rorug01G0319700 Rorug01G0319800 Rorug01G0319800
rosa_samantha	Rh1AG328500 Rh1BG290000 Rh1BG290100 Rh1CG306700 Rh1CG306800 Rh1DG321600 Rh1DG321700 Rh7AG342500 Rh7CG360000 Rh7DG340500
rosa_wichuraiana	Rw1G029150 Rw7G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	253
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	3 cut(s)	139, 268, 298
AhdI	GACNNNNNGTC	1 cut(s)	10
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	223, 359
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	2 cut(s)	152, 381
ApeKI	GCWGC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	4, 152
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	95, 200
BceAI	ACGGC	1 cut(s)	319
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BcoDI	GTCTC	2 cut(s)	223, 359
BfaI	CTAG	2 cut(s)	243, 388
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	4, 152
BmsI	GCATC	1 cut(s)	48
BpmI	CTGGAG	2 cut(s)	36, 337
BsaBI	GATNNNNATC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 268, 298
Bse1I	ACTGG	2 cut(s)	119, 186
Bse21I	CCTNAGG	1 cut(s)	293
Bse8I	GATNNNNATC	1 cut(s)	263
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	3 cut(s)	139, 268, 298
BseMII	CTCAG	2 cut(s)	200, 284
BseNI	ACTGG	2 cut(s)	119, 186
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	233
BshFI	GGCC	2 cut(s)	154, 383
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	139, 268, 298
BsmAI	GTCTC	2 cut(s)	223, 359
BsnI	GGCC	2 cut(s)	154, 383
Bso31I	GGTCTC	1 cut(s)	223
Bsp143I	GATC	4 cut(s)	245, 250, 258, 264
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	154, 383
BspCNI	CTCAG	2 cut(s)	199, 285
BspPI	GGATC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	119, 186
BssMI	GATC	4 cut(s)	245, 250, 258, 264
BstC8I	GCNNGC	2 cut(s)	156, 313
BstDEI	CTNAG	2 cut(s)	186, 293
BstENI	CCTNNNNNAGG	2 cut(s)	137, 296
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	4 cut(s)	248, 253, 261, 267
BstMAI	GTCTC	2 cut(s)	223, 359
BstMBI	GATC	4 cut(s)	245, 250, 258, 264
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 151, 312
BstV1I	GCAGC	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	154, 383
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	156, 313
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	4, 152
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	7 cut(s)	73, 118, 154, 185, 311, 332, 383
CviKI_1	RGCY	7 cut(s)	73, 118, 154, 185, 311, 332, 383
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	2 cut(s)	186, 293
DpnI	GATC	4 cut(s)	247, 252, 260, 266
DpnII	GATC	4 cut(s)	245, 250, 258, 264
DriI	GACNNNNNGTC	1 cut(s)	10
Eam1105I	GACNNNNNGTC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	4
Eco81I	CCTNAGG	1 cut(s)	293
EcoNI	CCTNNNNNAGG	2 cut(s)	137, 296
EcoO109I	RGGNCCY	1 cut(s)	152
FaeI	CATG	1 cut(s)	149
FaiI	YATR	1 cut(s)	147
FatI	CATG	1 cut(s)	145
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	243, 388
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	222
GsuI	CTGGAG	2 cut(s)	36, 337
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	154, 383
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	189, 250
Hpy188III	TCNNGA	3 cut(s)	15, 243, 262
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	3 cut(s)	71, 292, 316
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 151, 312
HpyF3I	CTNAG	2 cut(s)	186, 293
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	4 cut(s)	245, 250, 258, 264
LmnI	GCTCC	2 cut(s)	142, 218
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	2 cut(s)	243, 388
MalI	GATC	4 cut(s)	247, 252, 260, 266
MboI	GATC	4 cut(s)	245, 250, 258, 264
MboII	GAAGA	2 cut(s)	110, 364
MmeI	TCCRAC	1 cut(s)	11
MnlI	CCTC	8 cut(s)	84, 102, 133, 143, 163, 183, 288, 312
MspI	CCGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	124, 151, 312
NdeII	GATC	4 cut(s)	245, 250, 258, 264
NlaIII	CATG	1 cut(s)	149
NmeAIII	GCCGAG	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	4, 152
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	4 cut(s)	245, 250, 258, 264
Sau96I	GGNCC	2 cut(s)	4, 152
SetI	ASST	7 cut(s)	9, 82, 174, 194, 294, 327, 334
SfaNI	GCATC	1 cut(s)	48
SinI	GGWCC	1 cut(s)	4
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	2 cut(s)	243, 388
TaqI	TCGA	2 cut(s)	168, 288
TatI	WGTACW	1 cut(s)	346
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	2 cut(s)	137, 296
XbaI	TCTAGA	1 cut(s)	242
XspI	CTAG	2 cut(s)	243, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.