Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005545

Physical Location & Seq

Genomic Coordinates Reverse (-)

42563232 .. 42569365

Gene Structure 6134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG290000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGAACACCCTCCGATCATTCACAAATCAGACACAGCAAAATTGCTATGCTTTGCCTGTCAATAAGCAAACCGTACGCTACCTGATTCGGGTTGGGTTCTACTATGGCAACTATGATGGTCTCTCGAACCCTCCATCGTTCGAAATTCATATCGACGGCCAAAAATGGTCGACGGTCAAAACATCAACCGTGGGAGAAGGGTCAATATACCATGAAGCCTTGTATGAGACTCAAGGGTCAGGTTCTATTAGTCTTTGCGTTGTGCAAGTTAAGGATGGAGGGGTTCCCTTTATTTCTTCAATAGAAGCTGTTCCGTTATCGGCTTCTTCTAATCCATTGTACCCTAAGATGGAGACAAACAACACTTTCGATTTAGTATCCAGGATAAACTTTGGTGGTGATGAAATAAGGTTCACAGGGTTATTATCAGAAAACTATAACCGAATATGGACACGGGGAACAACTCCGCCAAACTGCAACGAAGTTTCTACCTTACCGGATATACTCTCCCCAGAAAATGACCCTCCTGTTTCAGTGTTGCGCACTGCCATAGAATCAATAGACCTTACCCGTCCAATTATCTTGTCCGTTAGCCTCTCTCAAACAACCCCCCAGTCAGCTTATTTTGTGCTCTATTTTACCGAAACGACAAGCCTACCTAAACCAGGCGACACCAGAATCATTCAGATCAACATCAATGGTCAAATGAAATCTACAGTGACACTTGAGTTCACCAAATGCAAGTTCTATTTTAATCACTCTTCAGTCACTATTGGATGGTTGAACATCGATTGCGGGAACAGTGCTGTACGTGTAGATCCCACAAACTTACTGACACGGGTCACAGACAAGGATTTGATCCAAACGGGCATCAACAAAGAAGTTCCACAAAAGCAATCACTTGAAGAAATGAACACCCTCCGTTCATTCCCAAATCAGACACCACAAAATTGCTATGCTTTGCCTGTCAATAAGCAAACCGTACGCTACCTGATTCGGGTTGGGTTCTATTATGGCAACTATGATGGTCTCTCGAACCCTCCATCGTTCGATATACATATCGATGGTCAAAAATGGTCGACGGTCAAAACATCAACTCTGGGAGAAGGGCCAATGTACCATGAAGCTCTGTATGAAACTCAAGGGTCAGGTTCTATTAGTCTTTGCGTTCTGCAAGTAAAGGATGGAGGGGCTCCCTTTATTTCTTCAATAGAAGCTGTTCCGTTATCGGCTCCTTTTAATTCATTGTACCCTAAGATGGAGACAAACAACACTTTCGATTTAGTATCCAGGATAAACTTTGGTGGTGATGAAATAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

440

Amino Acids

48.87

Weight (kDa)

5.4

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	2 - 251	1.4e-45	Malectin-like domain
Malectin_like	PF12819	263 - 437	5.1e-38	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20860
malus_domestica	MD01G1117700.v1.1
prunus_persica	Prupe.2G225100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365101 RchiOBHm_Chr7g0221441
rosa_laevigata	RLG00000027442 RLG00000027443 RLG00000027444
rosa_multiflora	Rmu_ssc0000112.1_g000004
rosa_roxburghii	Rroxscaffold_4G00291450 Rroxscaffold_4G00291460 Rroxscaffold_4G00291470 Rroxscaffold_4G00291480
rosa_rugosa	Rorug01G0319600 Rorug01G0319700 Rorug01G0319800 Rorug01G0319800
rosa_samantha	Rh1AG328500 Rh1BG290000 Rh1BG290100 Rh1CG306700 Rh1CG306800 Rh1DG321600 Rh1DG321700 Rh7AG342500 Rh7CG360000 Rh7DG340500
rosa_wichuraiana	Rw1G029150 Rw7G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
Acc16I	TGCGCA	1 cut(s)	542
AccI	GTMKAC	2 cut(s)	170, 1079
AciI	CCGC	2 cut(s)	467, 795
AclWI	GGATC	2 cut(s)	812, 853
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	6 cut(s)	75, 341, 810, 984, 1118, 1250
AfiI	CCNNNNNNNGG	5 cut(s)	88, 349, 665, 997, 1258
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	4 cut(s)	300, 784, 905, 1209
AjnI	CCWGG	3 cut(s)	380, 664, 1289
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AluBI	AGCT	4 cut(s)	308, 620, 1127, 1217
AluI	AGCT	4 cut(s)	308, 620, 1127, 1217
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	5 cut(s)	125, 221, 347, 1034, 1256
AlwI	GGATC	2 cut(s)	812, 853
AoxI	GGCC	2 cut(s)	157, 1109
ApoI	RAATTY	1 cut(s)	144
Asp700I	GAANNNNTTC	2 cut(s)	309, 1218
AspLEI	GCGC	1 cut(s)	543
AspS9I	GGNCC	1 cut(s)	1109
AsuHPI	GGTGA	3 cut(s)	410, 724, 1319
AsuII	TTCGAA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	1195
Bbv12I	GWGCWC	1 cut(s)	633
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	3 cut(s)	382, 666, 1291
BciVI	GTATCC	2 cut(s)	388, 1297
BcoDI	GTCTC	5 cut(s)	125, 221, 347, 1034, 1256
BfmI	CTRYAG	1 cut(s)	714
BfuI	GTATCC	2 cut(s)	388, 1297
Bme1390I	CCNGG	3 cut(s)	382, 666, 1291
BmgT120I	GGNCC	1 cut(s)	1109
BmiI	GGNNCC	3 cut(s)	285, 1194, 1233
BmrFI	CCNGG	3 cut(s)	382, 666, 1291
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	1 cut(s)	879
BmuI	ACTGGG	1 cut(s)	607
BoxI	GACNNNNGTC	1 cut(s)	839
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	3 cut(s)	216, 746, 1125
Bsa29I	ATCGAT	2 cut(s)	789, 1062
BsaAI	YACGTR	1 cut(s)	812
BsaBI	GATNNNNATC	1 cut(s)	692
BsaI	GGTCTC	2 cut(s)	125, 1034
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 349, 665, 997, 1258
Bse1I	ACTGG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	692
BseBI	CCWGG	3 cut(s)	382, 666, 1291
BseCI	ATCGAT	2 cut(s)	789, 1062
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	3 cut(s)	280, 782, 1189
BseJI	GATNNNNATC	1 cut(s)	692
BseLI	CCNNNNNNNGG	5 cut(s)	88, 349, 665, 997, 1258
BseNI	ACTGG	1 cut(s)	613
BshFI	GGCC	2 cut(s)	159, 1111
BshVI	ATCGAT	2 cut(s)	789, 1062
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	497
BsiWI	CGTACG	2 cut(s)	73, 982
BslI	CCNNNNNNNGG	5 cut(s)	88, 349, 665, 997, 1258
BsmAI	GTCTC	5 cut(s)	125, 221, 347, 1034, 1256
BsnI	GGCC	2 cut(s)	159, 1111
Bso31I	GGTCTC	2 cut(s)	125, 1034
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	633, 1195
Bsp143I	GATC	4 cut(s)	14, 687, 817, 858
BspACI	CCGC	2 cut(s)	467, 795
BspANI	GGCC	2 cut(s)	159, 1111
BspDI	ATCGAT	2 cut(s)	789, 1062
BspLI	GGNNCC	3 cut(s)	285, 1194, 1233
BspPI	GGATC	2 cut(s)	812, 853
BspT104I	TTCGAA	1 cut(s)	141
BspTNI	GGTCTC	2 cut(s)	125, 1034
BsrI	ACTGG	1 cut(s)	613
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	4 cut(s)	14, 687, 817, 858
Bst2UI	CCWGG	3 cut(s)	382, 666, 1291
Bst4CI	ACNGT	7 cut(s)	73, 175, 190, 718, 803, 982, 1084
Bst6I	CTCTTC	1 cut(s)	766
BstBAI	YACGTR	1 cut(s)	812
BstBI	TTCGAA	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	345, 1254
BstDSI	CCRYGG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	663
BstF5I	GGATG	3 cut(s)	280, 782, 1189
BstHHI	GCGC	1 cut(s)	543
BstKTI	GATC	4 cut(s)	17, 690, 820, 861
BstMAI	GTCTC	5 cut(s)	125, 221, 347, 1034, 1256
BstMBI	GATC	4 cut(s)	14, 687, 817, 858
BstNI	CCWGG	3 cut(s)	382, 666, 1291
BstPAI	GACNNNNGTC	1 cut(s)	839
BstSCI	CCNGG	3 cut(s)	380, 664, 1289
BstSFI	CTRYAG	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
Bsu15I	ATCGAT	2 cut(s)	789, 1062
BsuI	GTATCC	2 cut(s)	388, 1297
BsuRI	GGCC	2 cut(s)	159, 1111
BsuTUI	ATCGAT	2 cut(s)	789, 1062
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	3 cut(s)	280, 782, 1189
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	4 cut(s)	540, 543, 723, 808
CfoI	GCGC	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	1109
ClaI	ATCGAT	2 cut(s)	789, 1062
Csp6I	GTAC	6 cut(s)	74, 340, 809, 983, 1117, 1249
CviAII	CATG	2 cut(s)	212, 1121
CviQI	GTAC	6 cut(s)	74, 340, 809, 983, 1117, 1249
DdeI	CTNAG	2 cut(s)	345, 1254
DpnI	GATC	4 cut(s)	16, 689, 819, 860
DpnII	GATC	4 cut(s)	14, 687, 817, 858
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	766
EarI	CTCTTC	1 cut(s)	766
EciI	GGCGGA	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	1195
Eco31I	GGTCTC	2 cut(s)	125, 1034
Eco57I	CTGAAG	1 cut(s)	747
EcoNI	CCTNNNNNAGG	1 cut(s)	663
EcoRII	CCWGG	3 cut(s)	380, 664, 1289
EcoT38I	GRGCYC	1 cut(s)	1195
FaeI	CATG	2 cut(s)	215, 1124
FatI	CATG	2 cut(s)	211, 1120
FauI	CCCGC	1 cut(s)	788
FblI	GTMKAC	2 cut(s)	170, 1079
FokI	GGATG	3 cut(s)	287, 789, 1196
FriOI	GRGCYC	1 cut(s)	1195
FspI	TGCGCA	1 cut(s)	542
GlaI	GCGC	1 cut(s)	542
HaeIII	GGCC	2 cut(s)	159, 1111
HapII	CCGG	1 cut(s)	497
HhaI	GCGC	1 cut(s)	543
Hin1II	CATG	2 cut(s)	215, 1124
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HincII	GTYRAC	2 cut(s)	171, 1080
HindII	GTYRAC	2 cut(s)	171, 1080
HinfI	GANTC	5 cut(s)	85, 229, 554, 678, 994
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	3 cut(s)	410, 724, 1319
Hpy166II	GTNNAC	4 cut(s)	171, 414, 732, 1080
Hpy188I	TCNGA	5 cut(s)	14, 30, 430, 687, 939
Hpy188III	TCNNGA	2 cut(s)	124, 1033
Hpy8I	GTNNAC	4 cut(s)	171, 414, 732, 1080
Hpy99I	CGWCG	3 cut(s)	158, 175, 1084
HpyAV	CCTTC	2 cut(s)	191, 1100
HpyCH4III	ACNGT	7 cut(s)	73, 175, 190, 718, 803, 982, 1084
HpyCH4IV	ACGT	1 cut(s)	811
HpyCH4V	TGCA	4 cut(s)	265, 477, 741, 1174
HpyF3I	CTNAG	2 cut(s)	345, 1254
HpySE526I	ACGT	1 cut(s)	811
Hsp92II	CATG	2 cut(s)	215, 1124
HspAI	GCGC	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	14, 687, 817, 858
LmnI	GCTCC	2 cut(s)	1198, 1237
LweI	GCATC	1 cut(s)	879
MaeII	ACGT	1 cut(s)	811
MaeIII	GTNAC	3 cut(s)	718, 766, 841
MalI	GATC	4 cut(s)	16, 689, 819, 860
MboI	GATC	4 cut(s)	14, 687, 817, 858
MboII	GAAGA	5 cut(s)	288, 318, 753, 917, 1197
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	2 cut(s)	633, 1195
MluCI	AATT	5 cut(s)	40, 144, 576, 949, 1240
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	8 cut(s)	20, 141, 272, 534, 605, 929, 1050, 1181
MroXI	GAANNNNTTC	2 cut(s)	309, 1218
MseI	TTAA	3 cut(s)	270, 753, 1239
MslI	CAYNNNNRTG	1 cut(s)	1062
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	3 cut(s)	382, 666, 1291
MvaI	CCWGG	3 cut(s)	382, 666, 1291
NdeII	GATC	4 cut(s)	14, 687, 817, 858
NlaIII	CATG	2 cut(s)	215, 1124
NlaIV	GGNNCC	3 cut(s)	285, 1194, 1233
NmuCI	GTSAC	3 cut(s)	718, 766, 841
NsbI	TGCGCA	1 cut(s)	542
NspV	TTCGAA	1 cut(s)	141
PdmI	GAANNNNTTC	2 cut(s)	309, 1218
PfeI	GAWTC	4 cut(s)	85, 554, 678, 994
Pfl23II	CGTACG	2 cut(s)	73, 982
PfoI	TCCNGGA	2 cut(s)	380, 1289
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	812
PshAI	GACNNNNGTC	1 cut(s)	839
Psp6I	CCWGG	3 cut(s)	380, 664, 1289
PspGI	CCWGG	3 cut(s)	380, 664, 1289
PspLI	CGTACG	2 cut(s)	73, 982
PspN4I	GGNNCC	3 cut(s)	285, 1194, 1233
PspPI	GGNCC	1 cut(s)	1109
PsuI	RGATCY	1 cut(s)	817
RsaI	GTAC	6 cut(s)	75, 341, 810, 984, 1118, 1250
RsaNI	GTAC	6 cut(s)	74, 340, 809, 983, 1117, 1249
RseI	CAYNNNNRTG	1 cut(s)	1062
SalI	GTCGAC	2 cut(s)	169, 1078
SaqAI	TTAA	3 cut(s)	270, 753, 1239
Sau3AI	GATC	4 cut(s)	14, 687, 817, 858
Sau96I	GGNCC	1 cut(s)	1109
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	382, 666, 1291
SduI	GDGCHC	2 cut(s)	633, 1195
SfaNI	GCATC	1 cut(s)	879
SfcI	CTRYAG	1 cut(s)	714
SfuI	TTCGAA	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	1062
SmlI	CTYRAG	3 cut(s)	231, 725, 1140
SmoI	CTYRAG	3 cut(s)	231, 725, 1140
Sse9I	AATT	5 cut(s)	40, 144, 576, 949, 1240
SsiI	CCGC	2 cut(s)	467, 795
StyD4I	CCNGG	3 cut(s)	380, 664, 1289
TaaI	ACNGT	7 cut(s)	73, 175, 190, 718, 803, 982, 1084
TaiI	ACGT	1 cut(s)	814
TasI	AATT	5 cut(s)	40, 144, 576, 949, 1240
TfiI	GAWTC	4 cut(s)	85, 554, 678, 994
Tru1I	TTAA	3 cut(s)	270, 753, 1239
Tru9I	TTAA	3 cut(s)	270, 753, 1239
TscAI	CASTG	4 cut(s)	540, 550, 723, 808
TseFI	GTSAC	3 cut(s)	718, 766, 841
Tsp45I	GTSAC	3 cut(s)	718, 766, 841
TspGWI	ACGGA	4 cut(s)	303, 577, 911, 1212
TspRI	CASTG	4 cut(s)	540, 550, 723, 808
XagI	CCTNNNNNAGG	1 cut(s)	663
XapI	RAATTY	1 cut(s)	144
XmiI	GTMKAC	2 cut(s)	170, 1079
XmnI	GAANNNNTTC	2 cut(s)	309, 1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.