RLG00000027443

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005545
Physical Location & Seq
Forward (+)
11716485 .. 11718905
2421 bp
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UTR
Exon/CDS
Intron
RLM00000027443

Sequence Viewer

Length: 1260 bp
ATGCCCGTGGCGGTGGCGTTGATATGGCTGAAAGTCAAAGATGCTACATCAAAAGATGAGTTGTTCATGACTTTCATTAGTAAGAGTTATTCTCACAGGAAAGCCACTATTGGATGGTTGAACATTGATTGCGGGAACAGTGTTGTACGCGTAGATCCCACAAACTTACTGACATGGGTCACAGACAAGGACTTGATCCAAACGGGCATCAACAAAGAAGTTCCACAAAATCAATCACTAGAAGAAATGAACACCCTCCGATCATTCCCAAATCAGACACCACAAAATTGCTATGCTTTGCCTGTCAATAAGCAAACCGTACGCTACCTGATTCGGGTTGGGTTCTACTATGGCAACTATGATGGTCTCTCGAACCCTACATCGTTCGAAATTCATATCGACGGCCAAAAATGGTCGATAGTCAAAACATCAACCGCGGCAGAAGGGCCAATATACCATGAAGCCTTGTATGAAACTCAAGGGCCAGGTTCTATTAGTCTTTGCGTTGTGCAAGTTAAGGATGGAGGGGTTCCCTTGATTTCTTCAATAGAAGCTGTTCCGTTATCGGCGTCTTCTAATCCATTGTACCCTAAGATGGAGACAAACAACACTTTCGATTTAGTATCCAGGATAAACTTTGGTGGTGATGAAATAAGGTTCACAGGATTATTATCAGAAAACTATAACCGAATATGGACACGAGGAAAAACTCCGCCAAACTGCAACGAAGTTTCTACCTTGCCAGATATACTCTCCCCAGAAAATGACCCTCCTATTTCAGTGTTACGCACCGCTATAGAATCAATAGACCTTACCCATCCAATAACCTTGTCCGTTAGCCTCTCGCATACAACACCCCTGTCAGCTTATTTTGTGCTCTATTTTACCGAAACGACAAGCCTACCTAAACCAGGCGACACCAGAATCATTCAGATCAACATCAATGGTCAAATGAAATCCACAGTGACACTTGAGTTCACCAAATGCAAGGTGATCACATTATACCCTGTGATGGTCGAGGGTACAACAATAAACGTGACATTGGCCTCGGCTAGTAGCTCCATCCTACCTCCGATCATCAATGCAATGGAAGTGTTCACAAGAGTGGATCATGAAAAGAATTCACCTCCTCCTCCTTCTCCAACCTCACATGAAAAGAGTTCATCTCCTCCTCCTTCTCCATCATCAGTACCAGAGGAAACTTCTTCTGTGCGCATATTGATATCGTTTCTTGTGTTTGTTTGTCTCTTCTATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

420

Amino Acids

46.31

Weight (kDa)

5.58

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 42 - 367 5.9e-63 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1214
AccII CGCG 2 cut(s) 150, 437
AciI CCGC 6 cut(s) 11, 132, 435, 437, 713, 792
AclWI GGATC 3 cut(s) 149, 190, 1116
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 2 cut(s) 390, 1120
AcyI GRCGYC 1 cut(s) 569
AfaI GTAC 5 cut(s) 147, 321, 587, 1024, 1191
AfiI CCNNNNNNNGG 4 cut(s) 334, 595, 911, 1012
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 2 cut(s) 121, 546
AjnI CCWGG 3 cut(s) 484, 626, 910
AleI CACNNNNGTG 1 cut(s) 1103
AluBI AGCT 3 cut(s) 554, 866, 1059
AluI AGCT 3 cut(s) 554, 866, 1059
Alw21I GWGCWC 1 cut(s) 879
Alw26I GTCTC 3 cut(s) 371, 593, 1250
AlwI GGATC 3 cut(s) 149, 190, 1116
AoxI GGCC 4 cut(s) 403, 446, 482, 1044
ApoI RAATTY 2 cut(s) 390, 1120
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 1 cut(s) 1215
AspS9I GGNCC 2 cut(s) 446, 482
AsuHPI GGTGA 4 cut(s) 656, 970, 1003, 1116
AsuII TTCGAA 1 cut(s) 387
BauI CACGAG 1 cut(s) 699
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 879
BccI CCATC 8 cut(s) 108, 356, 515, 589, 825, 1006, 1070, 1189
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 3 cut(s) 486, 628, 912
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 1 cut(s) 993
BcoDI GTCTC 3 cut(s) 371, 593, 1250
BfaI CTAG 3 cut(s) 239, 1053, 1258
BfmI CTRYAG 1 cut(s) 795
BfuI GTATCC 1 cut(s) 634
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 3 cut(s) 486, 628, 912
BmgT120I GGNCC 2 cut(s) 446, 482
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 3 cut(s) 486, 628, 912
BmsI GCATC 2 cut(s) 31, 216
BoxI GACNNNNGTC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 564
BplI GAGNNNNNCTC 4 cut(s) 76, 108, 1150, 1182
Bpu14I TTCGAA 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 462, 992
BsaBI GATNNNNATC 2 cut(s) 670, 938
BsaHI GRCGYC 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 6, 435, 1047
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 595, 911, 1012
Bse3DI GCAATG 1 cut(s) 1092
Bse8I GATNNNNATC 2 cut(s) 670, 938
BseBI CCWGG 3 cut(s) 486, 628, 912
BseDI CCNNGG 3 cut(s) 6, 435, 1047
BseGI GGATG 4 cut(s) 119, 526, 817, 1062
BseJI GATNNNNATC 2 cut(s) 670, 938
BseLI CCNNNNNNNGG 4 cut(s) 334, 595, 911, 1012
BseMI GCAATG 1 cut(s) 1092
BseRI GAGGAG 4 cut(s) 1119, 1122, 1158, 1161
Bsh1236I CGCG 2 cut(s) 150, 437
BshFI GGCC 4 cut(s) 405, 448, 484, 1046
BsiHKAI GWGCWC 1 cut(s) 879
BsiWI CGTACG 1 cut(s) 319
BslI CCNNNNNNNGG 4 cut(s) 334, 595, 911, 1012
BsmAI GTCTC 3 cut(s) 371, 593, 1250
BsnI GGCC 4 cut(s) 405, 448, 484, 1046
Bso31I GGTCTC 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 879
Bsp143I GATC 7 cut(s) 154, 195, 260, 933, 993, 1074, 1108
BspACI CCGC 6 cut(s) 11, 132, 435, 437, 713, 792
BspANI GGCC 4 cut(s) 405, 448, 484, 1046
BspFNI CGCG 2 cut(s) 150, 437
BspHI TCATGA 2 cut(s) 66, 1111
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 3 cut(s) 149, 190, 1116
BspT104I TTCGAA 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 1092
BssECI CCNNGG 3 cut(s) 6, 435, 1047
BssMI GATC 7 cut(s) 154, 195, 260, 933, 993, 1074, 1108
BssNI GRCGYC 1 cut(s) 569
BssSI CACGAG 1 cut(s) 699
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 3 cut(s) 486, 628, 912
Bst4CI ACNGT 3 cut(s) 140, 319, 964
Bst6I CTCTTC 1 cut(s) 1253
BstACI GRCGYC 1 cut(s) 569
BstBI TTCGAA 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 591
BstDSI CCRYGG 2 cut(s) 6, 435
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 4 cut(s) 119, 526, 817, 1062
BstFNI CGCG 2 cut(s) 150, 437
BstHHI GCGC 1 cut(s) 1215
BstKTI GATC 7 cut(s) 157, 198, 263, 936, 996, 1077, 1111
BstMAI GTCTC 3 cut(s) 371, 593, 1250
BstMBI GATC 7 cut(s) 154, 195, 260, 933, 993, 1074, 1108
BstNI CCWGG 3 cut(s) 486, 628, 912
BstPAI GACNNNNGTC 1 cut(s) 176
BstSCI CCNGG 3 cut(s) 484, 626, 910
BstSFI CTRYAG 1 cut(s) 795
BstUI CGCG 2 cut(s) 150, 437
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 4 cut(s) 405, 448, 484, 1046
BtgI CCRYGG 2 cut(s) 6, 435
BtsCI GGATG 4 cut(s) 119, 526, 817, 1062
BtsIMutI CAGTG 3 cut(s) 145, 786, 969
CciI TCATGA 2 cut(s) 66, 1111
CfoI GCGC 1 cut(s) 1215
Cfr13I GGNCC 2 cut(s) 446, 482
Cfr42I CCGCGG 1 cut(s) 438
CseI GACGC 1 cut(s) 558
Csp6I GTAC 5 cut(s) 146, 320, 586, 1023, 1190
CviAII CATG 5 cut(s) 67, 174, 458, 1112, 1151
CviQI GTAC 5 cut(s) 146, 320, 586, 1023, 1190
DdeI CTNAG 1 cut(s) 591
DpnI GATC 7 cut(s) 156, 197, 262, 935, 995, 1076, 1110
DpnII GATC 7 cut(s) 154, 195, 260, 933, 993, 1074, 1108
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 1253
EarI CTCTTC 1 cut(s) 1253
EciI GGCGGA 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 371
Eco32I GATATC 1 cut(s) 1224
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoRI GAATTC 1 cut(s) 1120
EcoRII CCWGG 3 cut(s) 484, 626, 910
EcoRV GATATC 1 cut(s) 1224
FaeI CATG 5 cut(s) 70, 177, 461, 1115, 1154
FatI CATG 5 cut(s) 66, 173, 457, 1111, 1150
FauI CCCGC 1 cut(s) 125
FbaI TGATCA 1 cut(s) 993
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 4 cut(s) 126, 533, 804, 1049
Fsp4HI GCNGC 1 cut(s) 438
FspAI RTGCGCAY 1 cut(s) 1214
FspBI CTAG 3 cut(s) 239, 1053, 1258
FspI TGCGCA 1 cut(s) 1214
GlaI GCGC 1 cut(s) 1214
GluI GCNGC 1 cut(s) 438
HaeIII GGCC 4 cut(s) 405, 448, 484, 1046
HgaI GACGC 1 cut(s) 558
HhaI GCGC 1 cut(s) 1215
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 5 cut(s) 70, 177, 461, 1115, 1154
Hin6I GCGC 1 cut(s) 1213
HinP1I GCGC 1 cut(s) 1213
HinfI GANTC 3 cut(s) 331, 800, 924
HphI GGTGA 4 cut(s) 656, 970, 1003, 1116
Hpy166II GTNNAC 3 cut(s) 660, 978, 1098
Hpy188I TCNGA 5 cut(s) 260, 276, 676, 933, 1074
Hpy188III TCNNGA 3 cut(s) 67, 370, 1112
Hpy8I GTNNAC 3 cut(s) 660, 978, 1098
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 3 cut(s) 437, 1146, 1185
HpyCH4III ACNGT 3 cut(s) 140, 319, 964
HpyCH4IV ACGT 1 cut(s) 1035
HpyCH4V TGCA 4 cut(s) 511, 723, 987, 1085
HpyF3I CTNAG 1 cut(s) 591
HpySE526I ACGT 1 cut(s) 1035
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 5 cut(s) 70, 177, 461, 1115, 1154
HspAI GCGC 1 cut(s) 1213
Ksp22I TGATCA 1 cut(s) 993
KspI CCGCGG 1 cut(s) 438
Kzo9I GATC 7 cut(s) 154, 195, 260, 933, 993, 1074, 1108
LmnI GCTCC 1 cut(s) 1064
LweI GCATC 2 cut(s) 31, 216
MaeI CTAG 3 cut(s) 239, 1053, 1258
MaeII ACGT 1 cut(s) 1035
MaeIII GTNAC 4 cut(s) 178, 783, 964, 1036
MalI GATC 7 cut(s) 156, 197, 262, 935, 995, 1076, 1110
MboI GATC 7 cut(s) 154, 195, 260, 933, 993, 1074, 1108
MboII GAAGA 5 cut(s) 254, 534, 564, 1197, 1240
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 879
MluCI AATT 3 cut(s) 286, 390, 1120
MluI ACGCGT 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 1166
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 1103
MspA1I CMGCKG 1 cut(s) 437
MspR9I CCNGG 3 cut(s) 486, 628, 912
MvaI CCWGG 3 cut(s) 486, 628, 912
MvnI CGCG 2 cut(s) 150, 437
NdeII GATC 7 cut(s) 154, 195, 260, 933, 993, 1074, 1108
NlaIII CATG 5 cut(s) 70, 177, 461, 1115, 1154
NlaIV GGNNCC 1 cut(s) 531
NmeAIII GCCGAG 1 cut(s) 1028
NmuCI GTSAC 3 cut(s) 178, 964, 1036
NsbI TGCGCA 1 cut(s) 1214
NspV TTCGAA 1 cut(s) 387
OliI CACNNNNGTG 1 cut(s) 1103
PagI TCATGA 2 cut(s) 66, 1111
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 3 cut(s) 331, 800, 924
Pfl23II CGTACG 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 626
PkrI GCNGC 1 cut(s) 439
PshAI GACNNNNGTC 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 484, 626, 910
PspGI CCWGG 3 cut(s) 484, 626, 910
PspLI CGTACG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 2 cut(s) 446, 482
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 5 cut(s) 147, 321, 587, 1024, 1191
RsaNI GTAC 5 cut(s) 146, 320, 586, 1023, 1190
RseI CAYNNNNRTG 1 cut(s) 1103
SacII CCGCGG 1 cut(s) 438
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 7 cut(s) 154, 195, 260, 933, 993, 1074, 1108
Sau96I GGNCC 2 cut(s) 446, 482
ScrFI CCNGG 3 cut(s) 486, 628, 912
SduI GDGCHC 1 cut(s) 879
SfaNI GCATC 2 cut(s) 31, 216
SfcI CTRYAG 1 cut(s) 795
Sfr303I CCGCGG 1 cut(s) 438
SfuI TTCGAA 1 cut(s) 387
SgrBI CCGCGG 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 1103
SmlI CTYRAG 2 cut(s) 477, 971
SmoI CTYRAG 2 cut(s) 477, 971
Sse9I AATT 3 cut(s) 286, 390, 1120
SsiI CCGC 6 cut(s) 11, 132, 435, 437, 713, 792
SspMI CTAG 3 cut(s) 239, 1053, 1258
StyD4I CCNGG 3 cut(s) 484, 626, 910
TaaI ACNGT 3 cut(s) 140, 319, 964
TaiI ACGT 1 cut(s) 1038
TaqI TCGA 6 cut(s) 371, 387, 399, 416, 615, 1017
TasI AATT 3 cut(s) 286, 390, 1120
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 3 cut(s) 331, 800, 924
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 3 cut(s) 145, 786, 969
TseFI GTSAC 3 cut(s) 178, 964, 1036
Tsp45I GTSAC 3 cut(s) 178, 964, 1036
TspGWI ACGGA 2 cut(s) 549, 823
TspRI CASTG 3 cut(s) 145, 786, 969
XagI CCTNNNNNAGG 1 cut(s) 909
XapI RAATTY 2 cut(s) 390, 1120
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 3 cut(s) 239, 1053, 1258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.