Rmu_ssc0000112.1_g000004

Carbohydrate-binding protein of the ER

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000112.1
Physical Location & Seq
Forward (+)
25202 .. 29201
4000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000112.1_g000004.1.cds

Sequence Viewer

Length: 1638 bp
atggctgctcttatccctgctacaattggaaaatcacattcttctttgccagttattgcttcttctttttcggatccatttcatctcaattcgggtttggtggaagtacctattgtttctcatagtgaatctttctcttctcatagtgttaatttaaagaaggcagcccgctcaaagaccatgaaatcgggtttggcgaaggaaaacttggttttatctgatgatcctcttctgacttctctgaggacaaagaaatctcttactacatcacatccctcttccattgaaactccgatgggacctctccaagatgttggtgattgcatttctttagttgtggcctcctctcggacttccaactctaaaatcaaaactagttctgcttcacgagctattactaaaggaaagggtcctttggttgttactccttgtaaaggtttggcttttagcgctagttgcactggctctcatgcattctggctctcatgcatcgttcagagaactcggaatccagataacacgagcaccatcattgctggaagacgcaaccctagggttgaccaagatcccacaaacttactgacatgggtcacagacaaggatttgatccaaacgggcatcaacaaagaagttccacaaaagcaatcacttgaagaaatgaacaccctccgttcattcccaaatcggacaccacaaaattgctatgctttgccagtcaataagcaaaccgtacgctacctgattcgggttgggttctactatggcaactatgatggtctctcaaaccctccatcgttcgatattcatatcgatggtcaaaaatggtcgacggtcaaaacatcaactctgggagaagggccaatgtatcatgaagccttgtatgaaactcaagggtcaggttctattagtctttgcgttgtgcaagttaaggatggaggggttccctttatttcttcaatagaagctgttccgttattggctccttttaatccattgtactctaagatggagacaaacaacactttcgatttagtatccaggataaactttggtggtgatgaaataaggttcacagggttattatcagaaaactataaccgaatatggacacgaggaacaactccgccaaactgcaacgaagtttctaccttaccagatatactctccccagaaaatgaccctcctatttcagtgttgcgcacgaccatagaatcaatagaccttacccatccaataaccttgcccgttagcctctcgcaaacaaccccccagtcagcttactttgtgctctattttaccgaaacgacaagcctacctaaaccaggcgacaccagaataattcagatcaacatcaatggtcaaatgaaatccacagtgacacttgagttcactaaatgcaaggtgatcacattataccctgtgatcgtcgagggtaccacaattaacgtgacattggcctcggctagcagctctaccctacctccgatcatcagtgcaatggaagtgttcacaagagtggatcatgaaaagagttcatctcctcctcctgcttctccagcctcacatggaactagaggaacttcttttgtgcgcacattaatatcgtttcttgtgtttggttgtttcttctattgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

545

Amino Acids

59.25

Weight (kDa)

8.56

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 1199, 1592
Acc65I GGTACC 1 cut(s) 1433
AccB1I GGYRCC 1 cut(s) 1433
AccBSI CCGCTC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 827
AciI CCGC 2 cut(s) 169, 1124
AclWI GGATC 6 cut(s) 68, 81, 218, 560, 601, 1527
AfaI GTAC 4 cut(s) 108, 732, 998, 1435
AfeI AGCGCT 1 cut(s) 451
AfiI CCNNNNNNNGG 4 cut(s) 348, 434, 745, 1322
AgsI TTSAA 3 cut(s) 287, 653, 957
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 2 cut(s) 1037, 1321
AjuI GAANNNNNNNTTGG 4 cut(s) 176, 191, 208, 223
AleI CACNNNNGTG 1 cut(s) 1514
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 4 cut(s) 392, 965, 1277, 1470
AluI AGCT 4 cut(s) 392, 965, 1277, 1470
Alw21I GWGCWC 2 cut(s) 527, 1290
Alw26I GTCTC 2 cut(s) 782, 1004
AlwI GGATC 6 cut(s) 68, 81, 218, 560, 601, 1527
Aor51HI AGCGCT 1 cut(s) 451
AoxI GGCC 3 cut(s) 339, 857, 1455
ApeKI GCWGC 3 cut(s) 5, 164, 1467
AseI ATTAAT 1 cut(s) 1598
Asp700I GAANNNNTTC 1 cut(s) 966
Asp718I GGTACC 1 cut(s) 1433
AspA2I CCTAGG 1 cut(s) 551
AspLEI GCGC 3 cut(s) 452, 1200, 1593
AspS9I GGNCC 3 cut(s) 299, 410, 857
AsuHPI GGTGA 3 cut(s) 329, 1067, 1414
AsuNHI GCTAGC 1 cut(s) 1463
AvaII GGWCC 2 cut(s) 299, 410
AvrII CCTAGG 1 cut(s) 551
BamHI GGATCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 1433
BauI CACGAG 3 cut(s) 387, 520, 1110
BbsI GAAGAC 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 527, 1290
BbvI GCAGC 2 cut(s) 176, 1479
BccI CCATC 8 cut(s) 289, 536, 767, 799, 806, 926, 1000, 1236
BciT130I CCWGG 2 cut(s) 1039, 1323
BciVI GTATCC 1 cut(s) 1045
BclI TGATCA 1 cut(s) 1404
BcoDI GTCTC 2 cut(s) 782, 1004
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
BfoI RGCGCY 1 cut(s) 453
BfuI GTATCC 1 cut(s) 1045
BisI GCNGC 3 cut(s) 6, 165, 1468
BlnI CCTAGG 1 cut(s) 551
BlsI GCNGC 3 cut(s) 7, 166, 1469
Bme1390I CCNGG 2 cut(s) 1039, 1323
Bme18I GGWCC 2 cut(s) 299, 410
BmgT120I GGNCC 3 cut(s) 299, 410, 857
BmiI GGNNCC 6 cut(s) 75, 300, 411, 942, 981, 1435
BmrFI CCNGG 2 cut(s) 1039, 1323
BmrI ACTGGG 1 cut(s) 1264
BmsI GCATC 2 cut(s) 498, 627
BmtI GCTAGC 1 cut(s) 1467
BmuI ACTGGG 1 cut(s) 1264
BoxI GACNNNNGTC 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 547
BplI GAGNNNNNCTC 2 cut(s) 1522, 1554
BpmI CTGGAG 1 cut(s) 1539
BpuEI CTTGAG 2 cut(s) 873, 1403
Bsa29I ATCGAT 1 cut(s) 810
BsaBI GATNNNNATC 1 cut(s) 1349
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 2 cut(s) 551, 1458
BsaXI ACNNNNNCTCC 2 cut(s) 1465, 1495
Bsc4I CCNNNNNNNGG 4 cut(s) 348, 434, 745, 1322
Bse1I ACTGG 4 cut(s) 50, 466, 713, 1270
Bse3DI GCAATG 2 cut(s) 531, 1503
Bse8I GATNNNNATC 1 cut(s) 1349
BseBI CCWGG 2 cut(s) 1039, 1323
BseCI ATCGAT 1 cut(s) 810
BseDI CCNNGG 2 cut(s) 551, 1458
BseGI GGATG 3 cut(s) 271, 937, 1228
BseJI GATNNNNATC 1 cut(s) 1349
BseLI CCNNNNNNNGG 4 cut(s) 348, 434, 745, 1322
BseMI GCAATG 2 cut(s) 531, 1503
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 4 cut(s) 50, 466, 713, 1270
BseRI GAGGAG 3 cut(s) 334, 1530, 1533
BseXI GCAGC 2 cut(s) 176, 1479
BshFI GGCC 3 cut(s) 341, 859, 1457
BshNI GGYRCC 1 cut(s) 1433
BshVI ATCGAT 1 cut(s) 810
BsiHKAI GWGCWC 2 cut(s) 527, 1290
BsiWI CGTACG 1 cut(s) 730
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 4 cut(s) 348, 434, 745, 1322
BsmAI GTCTC 2 cut(s) 782, 1004
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 3 cut(s) 341, 859, 1457
Bso31I GGTCTC 1 cut(s) 782
Bsp1286I GDGCHC 2 cut(s) 527, 1290
Bsp143I GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
BspACI CCGC 2 cut(s) 169, 1124
BspANI GGCC 3 cut(s) 341, 859, 1457
BspCNI CTCAG 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 810
BspHI TCATGA 2 cut(s) 868, 1522
BspLI GGNNCC 6 cut(s) 75, 300, 411, 942, 981, 1435
BspOI GCTAGC 1 cut(s) 1467
BspPI GGATC 6 cut(s) 68, 81, 218, 560, 601, 1527
BspT107I GGYRCC 1 cut(s) 1433
BspTNI GGTCTC 1 cut(s) 782
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 2 cut(s) 531, 1503
BsrI ACTGG 4 cut(s) 50, 466, 713, 1270
BssECI CCNNGG 2 cut(s) 551, 1458
BssMI GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
BssSI CACGAG 3 cut(s) 387, 520, 1110
BssT1I CCWWGG 1 cut(s) 551
Bst2BI CACGAG 3 cut(s) 387, 520, 1110
Bst2UI CCWGG 2 cut(s) 1039, 1323
Bst4CI ACNGT 3 cut(s) 730, 832, 1375
Bst6I CTCTTC 3 cut(s) 142, 234, 283
BstC8I GCNNGC 2 cut(s) 169, 1465
BstDEI CTNAG 2 cut(s) 242, 1002
BstENI CCTNNNNNAGG 2 cut(s) 432, 1320
BstF5I GGATG 3 cut(s) 271, 937, 1228
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 3 cut(s) 452, 1200, 1593
BstKTI GATC 9 cut(s) 76, 226, 568, 609, 1347, 1407, 1425, 1488, 1522
BstMAI GTCTC 2 cut(s) 782, 1004
BstMBI GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
BstMWI GCNNNNNNNGC 4 cut(s) 389, 449, 456, 1556
BstNI CCWGG 2 cut(s) 1039, 1323
BstPAI GACNNNNGTC 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 1037, 1321
BstV1I GCAGC 2 cut(s) 176, 1479
BstV2I GAAGAC 1 cut(s) 547
BstX2I RGATCY 2 cut(s) 73, 565
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 2 cut(s) 73, 565
Bsu15I ATCGAT 1 cut(s) 810
BsuI GTATCC 1 cut(s) 1045
BsuRI GGCC 3 cut(s) 341, 859, 1457
BsuTUI ATCGAT 1 cut(s) 810
BtsCI GGATG 3 cut(s) 271, 937, 1228
BtsIMutI CAGTG 4 cut(s) 459, 1197, 1380, 1498
Cac8I GCNNGC 2 cut(s) 169, 1465
CciI TCATGA 2 cut(s) 868, 1522
CfoI GCGC 3 cut(s) 452, 1200, 1593
Cfr13I GGNCC 3 cut(s) 299, 410, 857
ClaI ATCGAT 1 cut(s) 810
CseI GACGC 1 cut(s) 552
Csp6I GTAC 4 cut(s) 107, 731, 997, 1434
CviAII CATG 7 cut(s) 181, 470, 486, 585, 869, 1523, 1565
CviQI GTAC 4 cut(s) 107, 731, 997, 1434
DdeI CTNAG 2 cut(s) 242, 1002
DpnI GATC 9 cut(s) 75, 225, 567, 608, 1346, 1406, 1424, 1487, 1521
DpnII GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
DraI TTTAAA 1 cut(s) 156
Eam1104I CTCTTC 3 cut(s) 142, 234, 283
EarI CTCTTC 3 cut(s) 142, 234, 283
EciI GGCGGA 1 cut(s) 1113
Eco130I CCWWGG 1 cut(s) 551
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 2 cut(s) 299, 410
Eco47III AGCGCT 1 cut(s) 451
EcoNI CCTNNNNNAGG 2 cut(s) 432, 1320
EcoO109I RGGNCCY 2 cut(s) 299, 410
EcoRII CCWGG 2 cut(s) 1037, 1321
EcoT14I CCWWGG 1 cut(s) 551
EcoT22I ATGCAT 2 cut(s) 475, 491
ErhI CCWWGG 1 cut(s) 551
FaeI CATG 7 cut(s) 184, 473, 489, 588, 872, 1526, 1568
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 1 cut(s) 312
FatI CATG 7 cut(s) 180, 469, 485, 584, 868, 1522, 1564
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 1404
FblI GTMKAC 1 cut(s) 827
Fnu4HI GCNGC 3 cut(s) 6, 165, 1468
FokI GGATG 3 cut(s) 258, 944, 1215
Fsp4HI GCNGC 3 cut(s) 6, 165, 1468
FspAI RTGCGCAY 1 cut(s) 1592
FspBI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
FspI TGCGCA 2 cut(s) 1199, 1592
GlaI GCGC 3 cut(s) 451, 1199, 1592
GluI GCNGC 3 cut(s) 6, 165, 1468
GsuI CTGGAG 1 cut(s) 1539
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 3 cut(s) 341, 859, 1457
HgaI GACGC 1 cut(s) 552
HhaI GCGC 3 cut(s) 452, 1200, 1593
Hin1II CATG 7 cut(s) 184, 473, 489, 588, 872, 1526, 1568
Hin6I GCGC 3 cut(s) 450, 1198, 1591
HinP1I GCGC 3 cut(s) 450, 1198, 1591
HincII GTYRAC 2 cut(s) 559, 828
HindII GTYRAC 2 cut(s) 559, 828
HinfI GANTC 4 cut(s) 128, 508, 742, 1211
HphI GGTGA 3 cut(s) 329, 1067, 1414
Hpy166II GTNNAC 5 cut(s) 559, 828, 1071, 1389, 1509
Hpy188III TCNNGA 4 cut(s) 387, 512, 869, 1523
Hpy8I GTNNAC 5 cut(s) 559, 828, 1071, 1389, 1509
Hpy99I CGWCG 2 cut(s) 832, 1430
HpyAV CCTTC 3 cut(s) 154, 193, 848
HpyCH4III ACNGT 3 cut(s) 730, 832, 1375
HpyCH4IV ACGT 1 cut(s) 1446
HpyCH4V TGCA 8 cut(s) 324, 459, 473, 489, 922, 1134, 1398, 1496
HpyF10VI GCNNNNNNNGC 4 cut(s) 389, 449, 456, 1556
HpyF3I CTNAG 2 cut(s) 242, 1002
HpySE526I ACGT 1 cut(s) 1446
Hsp92II CATG 7 cut(s) 184, 473, 489, 588, 872, 1526, 1568
HspAI GCGC 3 cut(s) 450, 1198, 1591
KpnI GGTACC 1 cut(s) 1437
Ksp22I TGATCA 1 cut(s) 1404
Kzo9I GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
LmnI GCTCC 1 cut(s) 985
Lsp1109I GCAGC 2 cut(s) 176, 1479
LweI GCATC 2 cut(s) 498, 627
MaeI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
MaeII ACGT 1 cut(s) 1446
MaeIII GTNAC 4 cut(s) 421, 589, 1375, 1447
MalI GATC 9 cut(s) 75, 225, 567, 608, 1346, 1406, 1424, 1487, 1521
MbiI CCGCTC 1 cut(s) 171
MboI GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
MboII GAAGA 9 cut(s) 33, 54, 129, 221, 270, 552, 665, 945, 1618
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 2 cut(s) 73, 565
MhlI GDGCHC 2 cut(s) 527, 1290
MluCI AATT 6 cut(s) 24, 88, 151, 697, 1338, 1440
MmeI TCCRAC 1 cut(s) 381
Mph1103I ATGCAT 2 cut(s) 475, 491
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 6 cut(s) 150, 155, 927, 987, 1443, 1598
MslI CAYNNNNRTG 2 cut(s) 810, 1514
MspR9I CCNGG 2 cut(s) 1039, 1323
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 473
MvaI CCWGG 2 cut(s) 1039, 1323
MwoI GCNNNNNNNGC 4 cut(s) 389, 449, 456, 1556
NdeII GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
NheI GCTAGC 1 cut(s) 1463
NlaIII CATG 7 cut(s) 184, 473, 489, 588, 872, 1526, 1568
NlaIV GGNNCC 6 cut(s) 75, 300, 411, 942, 981, 1435
NmeAIII GCCGAG 1 cut(s) 1439
NmuCI GTSAC 3 cut(s) 589, 1375, 1447
NsbI TGCGCA 2 cut(s) 1199, 1592
NsiI ATGCAT 2 cut(s) 475, 491
OliI CACNNNNGTG 1 cut(s) 1514
PagI TCATGA 2 cut(s) 868, 1522
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PctI GAATGC 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 4 cut(s) 128, 508, 742, 1211
Pfl23II CGTACG 1 cut(s) 730
PfoI TCCNGGA 1 cut(s) 1037
PkrI GCNGC 3 cut(s) 7, 166, 1469
PpuMI RGGWCCY 2 cut(s) 299, 410
PshAI GACNNNNGTC 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 1598
Psp5II RGGWCCY 2 cut(s) 299, 410
Psp6I CCWGG 2 cut(s) 1037, 1321
PspGI CCWGG 2 cut(s) 1037, 1321
PspLI CGTACG 1 cut(s) 730
PspN4I GGNNCC 6 cut(s) 75, 300, 411, 942, 981, 1435
PspPI GGNCC 3 cut(s) 299, 410, 857
PspPPI RGGWCCY 2 cut(s) 299, 410
PsuI RGATCY 2 cut(s) 73, 565
RsaI GTAC 4 cut(s) 108, 732, 998, 1435
RsaNI GTAC 4 cut(s) 107, 731, 997, 1434
RseI CAYNNNNRTG 2 cut(s) 810, 1514
SalI GTCGAC 1 cut(s) 826
SaqAI TTAA 6 cut(s) 150, 155, 927, 987, 1443, 1598
SatI GCNGC 3 cut(s) 6, 165, 1468
Sau3AI GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
Sau96I GGNCC 3 cut(s) 299, 410, 857
ScrFI CCNGG 2 cut(s) 1039, 1323
SduI GDGCHC 2 cut(s) 527, 1290
SfaNI GCATC 2 cut(s) 498, 627
SinI GGWCC 2 cut(s) 299, 410
SmiMI CAYNNNNRTG 2 cut(s) 810, 1514
SmlI CTYRAG 2 cut(s) 888, 1382
SmoI CTYRAG 2 cut(s) 888, 1382
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 6 cut(s) 24, 88, 151, 697, 1338, 1440
SsiI CCGC 2 cut(s) 169, 1124
SspMI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
StyD4I CCNGG 2 cut(s) 1037, 1321
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 3 cut(s) 730, 832, 1375
TaiI ACGT 1 cut(s) 1449
TaqI TCGA 5 cut(s) 798, 810, 827, 1026, 1428
TasI AATT 6 cut(s) 24, 88, 151, 697, 1338, 1440
TatI WGTACW 1 cut(s) 996
TfiI GAWTC 4 cut(s) 128, 508, 742, 1211
Tru1I TTAA 6 cut(s) 150, 155, 927, 987, 1443, 1598
Tru9I TTAA 6 cut(s) 150, 155, 927, 987, 1443, 1598
TscAI CASTG 4 cut(s) 466, 1197, 1380, 1498
TseFI GTSAC 3 cut(s) 589, 1375, 1447
TseI GCWGC 3 cut(s) 5, 164, 1467
Tsp45I GTSAC 3 cut(s) 589, 1375, 1447
TspGWI ACGGA 2 cut(s) 659, 960
TspRI CASTG 4 cut(s) 466, 1197, 1380, 1498
VpaK11BI GGWCC 2 cut(s) 299, 410
VspI ATTAAT 1 cut(s) 1598
XagI CCTNNNNNAGG 2 cut(s) 432, 1320
XmaJI CCTAGG 1 cut(s) 551
XmiI GTMKAC 1 cut(s) 827
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
Zsp2I ATGCAT 2 cut(s) 475, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.