Rorug01G0319800

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005545
Physical Location & Seq
Reverse (-)
43841346 .. 43844190
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0319800.1

Sequence Viewer

Length: 1593 bp
ATGGGGAAGAAGGGAGGCTCCTCTTGGTTGACTGCTGTGAAAAGAGCTTTCAGATCTCCCACTAAGGACGATGAAGATCATAAGAAAAGAGAGAAGCGTAGGTGGATTTTCAGGAAGCCCACGAATTTAAGTCAAGAAAGTCCAAAGGAGAAAACTGAAAATGTATCAGTTGCTGCTGCAGAGCAGAGGCATGCTCTTGATGTTGCTGTGGCCACAGCCGAAGCAGCAATGGCGACTGCTCAAGCGGCCGCCGTCGAAGTGGCTCGGCTGACCAAGCCATCTAACCATGCCGGAGAGCAACTTCAGTTTGCAGCCATTGTCATTCAGACCGCTTTTAGAGGTTACTTGGCAAGGAGGGCGCTTCGTGCGCTTAAAGGGCTTGTGAAGCTGCAAGCTTTGGTGAGAGGACATAATGTGAGGAAGCAAGCGAAGATGACTCTCAGGTGTATGCAAGCTCTGGTTCGAGTTCAAGCTCGGGTTCTTGATCAGAGAACTAGGCTTTCCCATGAAGGTAGTAGAAAATCGGCCTTTAGCGACACTAATAGCAATAGCGCTTGGGAATCGCGGTATCTTCAAGACATTTCAGACCGAAAATCCATTTCTAGAGAGGGAAGTAGTATAGCAGATGATTGGGATGAAAGGCCTCACACTATTGAGGAAGTAAAAGCAATGTTGCAACATAGAAAAGAAGCTGCAATGAAGCGTGAGAAAGCTTTATCCCACGCCTTTTCTCAACAGATATGGAGAAATGGGAGGAGCCCATCAATGGGGAATGAGGAAGAGCTTGAAGAAAAACCCAAATGGTTAGACAGATGGATGGCCCCAAAGCCATGGGAGAGCAGCAGAGGAAGGGCTTCTACTGACCACAAAGACCCCATCAAAACAGTTGAAATCGACACCTCGCAGCCTTATTCAAGTTTATCATCCAATTTCCGAAGATCGAATGCAAGCCAATACCACCAACAAAACCAACAAAACCAACAGCAAAGACCTAGTTCACCACTCCATAGAGATAGATCCCACCAAAACCAACACTTCCACCACTCCCCCATCACACCCTCGCCATCAAAGAGCCGCCCTCCTCTCCAAGTGCGGTCTGCGAGCCCTCGTTGCGTTAGAGAAGACCGAAGCTCCAATGCGTCGCAAACCCCTAGCCTGAGGTCTAATTATTACTACAATGGTGGTGTTGTGCACCAACATAGTAGGGGCAGCACTAGCACTAGTGGCGGCAATGTTGGTGCTACATTGCCTAATTACATGGCAGCAACTGAATCTGCCAAGGCTCGAATTCGCTCCCAAAGTGCACCGAGGCAAAGGCCTTCGACACCTGACAGGGAGCGAGGAGGAGGAGTTGGATCAGTGAAGAAAAGACTTTCGTTTCCAGCTCCCGATCCTTATGGGGTTGTTGGAATGGGGGTTTATGCAGGAGGAGGTTATGGGCATAGCTTGAGGAGTCCGAGCTTTAAGAGTGTGGTGAGTGGATCACACTTTGGGTTGGAGCAACAATCTAACTATTCTTCATGTTGTACTGAGAGTCATGGTGGTGAGGCCTCTCCTTCTTCAACGAGTGACCTTAGAAGGTGGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

530

Amino Acids

59.11

Weight (kDa)

10.32

Isoelectric Point (pI)

69.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 368 - 485 1.7e-30 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 565
AciI CCGC 7 cut(s) 245, 249, 330, 565, 1075, 1093, 1227
AclWI GGATC 4 cut(s) 1011, 1363, 1385, 1489
AcoI YGGCCR 2 cut(s) 210, 246
AcsI RAATTY 2 cut(s) 124, 1287
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 1528
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 766, 767
AgsI TTSAA 6 cut(s) 470, 575, 788, 890, 915, 1563
AhlI ACTAGT 1 cut(s) 1220
Alw21I GWGCWC 2 cut(s) 1194, 1306
Alw44I GTGCAC 2 cut(s) 1190, 1302
AlwI GGATC 4 cut(s) 1011, 1363, 1385, 1489
AlwNI CAGNNNCTG 2 cut(s) 173, 1268
Ama87I CYCGRG 1 cut(s) 474
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 7 cut(s) 210, 246, 525, 641, 819, 1316, 1548
ApaLI GTGCAC 2 cut(s) 1190, 1302
ApoI RAATTY 2 cut(s) 124, 1287
Asp700I GAANNNNTTC 1 cut(s) 853
AspLEI GCGC 3 cut(s) 361, 370, 554
AspS9I GGNCC 1 cut(s) 820
AsuHPI GGTGA 4 cut(s) 412, 990, 1486, 1556
AvaI CYCGRG 1 cut(s) 474
AxyI CCTNAGG 1 cut(s) 1157
BaeGI GKGCMC 2 cut(s) 1194, 1306
BalI TGGCCA 1 cut(s) 212
BanII GRGCYC 2 cut(s) 761, 1106
BarI GAAGNNNNNNTAC 2 cut(s) 841, 873
BbsI GAAGAC 1 cut(s) 1128
Bbv12I GWGCWC 2 cut(s) 1194, 1306
BccI CCATC 7 cut(s) 286, 769, 807, 811, 884, 1058, 1072
BceAI ACGGC 1 cut(s) 236
BclI TGATCA 1 cut(s) 484
BcuI ACTAGT 1 cut(s) 1220
BfaI CTAG 6 cut(s) 495, 603, 993, 1152, 1215, 1221
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 2 cut(s) 362, 555
BglII AGATCT 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 3 cut(s) 19, 758, 822
BpiI GAAGAC 1 cut(s) 1128
BplI GAGNNNNNCTC 4 cut(s) 178, 210, 1063, 1095
BpuEI CTTGAG 2 cut(s) 225, 1468
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 830, 1278, 1307
BsaXI ACNNNNNCTCC 4 cut(s) 1115, 1145, 1335, 1365
Bsc4I CCNNNNNNNGG 2 cut(s) 766, 767
Bse21I CCTNAGG 1 cut(s) 1157
Bse3DI GCAATG 5 cut(s) 234, 675, 702, 1237, 1244
Bse8I GATNNNNATC 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 830, 1278, 1307
BseGI GGATG 3 cut(s) 640, 822, 923
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 766, 767
BseMI GCAATG 5 cut(s) 234, 675, 702, 1237, 1244
BseMII CTCAG 3 cut(s) 454, 1148, 1521
BseRI GAGGAG 8 cut(s) 10, 769, 1071, 1356, 1359, 1362, 1443, 1465
BseSI GKGCMC 2 cut(s) 1194, 1306
BseX3I CGGCCG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 565
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 7 cut(s) 212, 248, 527, 643, 821, 1318, 1550
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 1194, 1306
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 766, 767
BsmI GAATGC 1 cut(s) 949
BsnI GGCC 7 cut(s) 212, 248, 527, 643, 821, 1318, 1550
BsoBI CYCGRG 1 cut(s) 474
Bsp1286I GDGCHC 4 cut(s) 761, 1106, 1194, 1306
Bsp143I GATC 8 cut(s) 53, 76, 484, 938, 1016, 1355, 1390, 1481
Bsp19I CCATGG 1 cut(s) 830
BspACI CCGC 7 cut(s) 245, 249, 330, 565, 1075, 1093, 1227
BspANI GGCC 7 cut(s) 212, 248, 527, 643, 821, 1318, 1550
BspCNI CTCAG 3 cut(s) 453, 1149, 1522
BspFNI CGCG 1 cut(s) 565
BspLI GGNNCC 3 cut(s) 19, 758, 822
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 4 cut(s) 1011, 1363, 1385, 1489
BspQI GCTCTTC 1 cut(s) 774
BsrDI GCAATG 5 cut(s) 234, 675, 702, 1237, 1244
BssECI CCNNGG 3 cut(s) 830, 1278, 1307
BssMI GATC 8 cut(s) 53, 76, 484, 938, 1016, 1355, 1390, 1481
BssT1I CCWWGG 2 cut(s) 830, 1278
Bst4CI ACNGT 1 cut(s) 886
Bst6I CTCTTC 1 cut(s) 774
BstC8I GCNNGC 6 cut(s) 192, 393, 426, 453, 949, 1102
BstDEI CTNAG 5 cut(s) 63, 440, 1157, 1530, 1574
BstDSI CCRYGG 1 cut(s) 830
BstF5I GGATG 3 cut(s) 640, 822, 923
BstFNI CGCG 1 cut(s) 565
BstH2I RGCGCY 2 cut(s) 362, 555
BstHHI GCGC 3 cut(s) 361, 370, 554
BstKTI GATC 8 cut(s) 56, 79, 487, 941, 1019, 1358, 1393, 1484
BstMBI GATC 8 cut(s) 53, 76, 484, 938, 1016, 1355, 1390, 1481
BstMCI CGRYCG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 2 cut(s) 1194, 1306
BstUI CGCG 1 cut(s) 565
BstV2I GAAGAC 1 cut(s) 1128
BstX2I RGATCY 2 cut(s) 53, 1016
BstXI CCANNNNNNTGG 1 cut(s) 831
BstYI RGATCY 2 cut(s) 53, 1016
BstZI CGGCCG 1 cut(s) 246
Bsu36I CCTNAGG 1 cut(s) 1157
BsuRI GGCC 7 cut(s) 212, 248, 527, 643, 821, 1318, 1550
BtgI CCRYGG 1 cut(s) 830
BtsCI GGATG 3 cut(s) 640, 822, 923
BtsIMutI CAGTG 1 cut(s) 1365
Cac8I GCNNGC 6 cut(s) 192, 393, 426, 453, 949, 1102
CaiI CAGNNNCTG 2 cut(s) 173, 1268
CciNI GCGGCCGC 1 cut(s) 246
CfoI GCGC 3 cut(s) 361, 370, 554
Cfr13I GGNCC 1 cut(s) 820
CseI GACGC 1 cut(s) 1128
Csp6I GTAC 1 cut(s) 1527
CviAII CATG 7 cut(s) 191, 287, 506, 831, 1258, 1521, 1538
CviQI GTAC 1 cut(s) 1527
DdeI CTNAG 5 cut(s) 63, 440, 1157, 1530, 1574
DpnI GATC 8 cut(s) 55, 78, 486, 940, 1018, 1357, 1392, 1483
DpnII GATC 8 cut(s) 53, 76, 484, 938, 1016, 1355, 1390, 1481
EaeI YGGCCR 2 cut(s) 210, 246
EagI CGGCCG 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
EclXI CGGCCG 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 830, 1278
Eco147I AGGCCT 3 cut(s) 643, 1318, 1550
Eco24I GRGCYC 2 cut(s) 761, 1106
Eco47III AGCGCT 1 cut(s) 553
Eco52I CGGCCG 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 1157
Eco88I CYCGRG 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 1287
EcoT14I CCWWGG 2 cut(s) 830, 1278
EcoT38I GRGCYC 2 cut(s) 761, 1106
ErhI CCWWGG 2 cut(s) 830, 1278
FaeI CATG 7 cut(s) 194, 290, 509, 834, 1261, 1524, 1541
FatI CATG 7 cut(s) 190, 286, 505, 830, 1257, 1520, 1537
FbaI TGATCA 1 cut(s) 484
FokI GGATG 3 cut(s) 647, 829, 910
FriOI GRGCYC 2 cut(s) 761, 1106
FspBI CTAG 6 cut(s) 495, 603, 993, 1152, 1215, 1221
GlaI GCGC 3 cut(s) 360, 369, 553
HaeII RGCGCY 2 cut(s) 362, 555
HaeIII GGCC 7 cut(s) 212, 248, 527, 643, 821, 1318, 1550
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 1128
HhaI GCGC 3 cut(s) 361, 370, 554
Hin1II CATG 7 cut(s) 194, 290, 509, 834, 1261, 1524, 1541
Hin6I GCGC 3 cut(s) 359, 368, 552
HinP1I GCGC 3 cut(s) 359, 368, 552
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 2 cut(s) 393, 711
HinfI GANTC 5 cut(s) 436, 560, 1271, 1453, 1534
HpaII CCGG 1 cut(s) 291
HphI GGTGA 4 cut(s) 412, 990, 1486, 1556
Hpy166II GTNNAC 4 cut(s) 30, 998, 1192, 1304
Hpy188I TCNGA 6 cut(s) 53, 327, 489, 586, 935, 1458
Hpy188III TCNNGA 7 cut(s) 112, 134, 197, 482, 575, 603, 1388
Hpy8I GTNNAC 4 cut(s) 30, 998, 1192, 1304
Hpy99I CGWCG 2 cut(s) 257, 1144
HpyAV CCTTC 6 cut(s) 4, 503, 843, 1329, 1566, 1572
HpyCH4III ACNGT 1 cut(s) 886
HpyF3I CTNAG 5 cut(s) 63, 440, 1157, 1530, 1574
Hsp92II CATG 7 cut(s) 194, 290, 509, 834, 1261, 1524, 1541
HspAI GCGC 3 cut(s) 359, 368, 552
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 8 cut(s) 53, 76, 484, 938, 1016, 1355, 1390, 1481
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 7 cut(s) 23, 756, 1136, 1298, 1336, 1390, 1498
LpnPI CCDG 9 cut(s) 97, 304, 427, 443, 1169, 1318, 1341, 1395, 1410
MaeI CTAG 6 cut(s) 495, 603, 993, 1152, 1215, 1221
MaeIII GTNAC 2 cut(s) 341, 1568
MalI GATC 8 cut(s) 55, 78, 486, 940, 1018, 1357, 1392, 1483
MboI GATC 8 cut(s) 53, 76, 484, 938, 1016, 1355, 1390, 1481
MflI RGATCY 2 cut(s) 53, 1016
MhlI GDGCHC 4 cut(s) 761, 1106, 1194, 1306
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 5 cut(s) 124, 928, 1165, 1252, 1287
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 3 cut(s) 430, 1462, 1543
MmeI TCCRAC 3 cut(s) 1333, 1387, 1476
Mox20I TGGCCA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 853
MscI TGGCCA 1 cut(s) 212
MseI TTAA 3 cut(s) 128, 372, 1464
MslI CAYNNNNRTG 1 cut(s) 1542
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 949
MvnI CGCG 1 cut(s) 565
NcoI CCATGG 1 cut(s) 830
NdeII GATC 8 cut(s) 53, 76, 484, 938, 1016, 1355, 1390, 1481
NlaIII CATG 7 cut(s) 194, 290, 509, 834, 1261, 1524, 1541
NlaIV GGNNCC 3 cut(s) 19, 758, 822
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 1568
NotI GCGGCCGC 1 cut(s) 246
NspI RCATGY 1 cut(s) 194
PaeI GCATGC 1 cut(s) 194
PceI AGGCCT 3 cut(s) 643, 1318, 1550
PciSI GCTCTTC 1 cut(s) 774
PctI GAATGC 1 cut(s) 949
PdmI GAANNNNTTC 1 cut(s) 853
PfeI GAWTC 2 cut(s) 560, 1271
PleI GAGTC 3 cut(s) 430, 1461, 1542
PpsI GAGTC 3 cut(s) 430, 1461, 1542
PspN4I GGNNCC 3 cut(s) 19, 758, 822
PspPI GGNCC 1 cut(s) 820
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 2 cut(s) 173, 1268
PsuI RGATCY 2 cut(s) 53, 1016
RsaI GTAC 1 cut(s) 1528
RsaNI GTAC 1 cut(s) 1527
RseI CAYNNNNRTG 1 cut(s) 1542
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 3 cut(s) 128, 372, 1464
Sau3AI GATC 8 cut(s) 53, 76, 484, 938, 1016, 1355, 1390, 1481
Sau96I GGNCC 1 cut(s) 820
SchI GAGTC 3 cut(s) 430, 1462, 1543
SduI GDGCHC 4 cut(s) 761, 1106, 1194, 1306
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 1542
SmlI CTYRAG 2 cut(s) 240, 1447
SmoI CTYRAG 2 cut(s) 240, 1447
SpeI ACTAGT 1 cut(s) 1220
SphI GCATGC 1 cut(s) 194
Sse9I AATT 5 cut(s) 124, 928, 1165, 1252, 1287
SseBI AGGCCT 3 cut(s) 643, 1318, 1550
SsiI CCGC 7 cut(s) 245, 249, 330, 565, 1075, 1093, 1227
SspMI CTAG 6 cut(s) 495, 603, 993, 1152, 1215, 1221
StuI AGGCCT 3 cut(s) 643, 1318, 1550
StyI CCWWGG 2 cut(s) 830, 1278
TaaI ACNGT 1 cut(s) 886
TaqI TCGA 6 cut(s) 255, 463, 894, 941, 1285, 1322
TaqII GACCGA 2 cut(s) 603, 1140
TasI AATT 5 cut(s) 124, 928, 1165, 1252, 1287
TatI WGTACW 1 cut(s) 1526
TauI GCSGC 4 cut(s) 248, 251, 1077, 1230
TfiI GAWTC 2 cut(s) 560, 1271
Tru1I TTAA 3 cut(s) 128, 372, 1464
Tru9I TTAA 3 cut(s) 128, 372, 1464
TscAI CASTG 1 cut(s) 1365
TseFI GTSAC 1 cut(s) 1568
Tsp45I GTSAC 1 cut(s) 1568
TspDTI ATGAA 5 cut(s) 87, 522, 651, 713, 1509
TspRI CASTG 1 cut(s) 1365
VneI GTGCAC 2 cut(s) 1190, 1302
XapI RAATTY 2 cut(s) 124, 1287
XbaI TCTAGA 1 cut(s) 602
XceI RCATGY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 853
XspI CTAG 6 cut(s) 495, 603, 993, 1152, 1215, 1221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.