RLG00000027444

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005545
Physical Location & Seq
Forward (+)
11724312 .. 11726217
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027444

Sequence Viewer

Length: 1182 bp
ATGAACTTTCGATTAAAATGTGATTGGTCGATTAAGTTCTATCTTAATCACTCTTCAGTCACTATTGGATGGTTGAACATCGATTGCGGTAACAGTGCTGTACGTGTAGATCCCACAAACCTACTGACATGGGTCACAGACAAGGACTTGATCCAAACGGGCATCAACAAAGAAGTTCCACAAATGCAATCACTTGAAGAAATGAACACCCTCCGATCATTCCCAAATCGGACACCACAAAATTGCTATGCTTTGCCTGTCAATAAGCAAACCGTACGCTACCTGATTCGGGTTGGGTTCTACTATGGCAACTATGATGGTCTCTCGAACCCTCCATCGTTCGATATTCATATTGACGGTCAAAAATGGTCGACGGTCAAAACATCAACTCTGGGAGAAGGGCCAATGTATCATGAAGCCTTGTATGAAACTCAAGGGTCAGGTTCTATTAGTCTTTGCGTTGTGCAAGTTAAGGATGGAGGGGTTCCCTTTATTTCTTCACTAGAAGCTGTTCCGTTATCGGCTCCTTTTAATTCATTGTACCCTAAGATGGAGACAAACAACACTTTCGATTTAGTATCCAGGATAAACTTTGGTGGTGATGAAATAAGGTTCACAGGTTTATTATCAGAAAACTATAACCGAATATGGACACGAGGAACAACTCCGCCAAACTGCAACGAAGTTTCTACCTTACCAGATATACTCTCCCCAGAAAATGACCCTCCTATTTCAGTGTTGCGCACCGCCATAGAATCAATAGACCTTACCCATCCAATAACCTTGTCCGTTAGCCTCTCGCAAACAACCCCCCAGTCAGCTTACTTTGTGCTTTATTTTACCGAAACGACAAGCCTACCTAAACCAGGCGACACCAGAATCATTCAGATCAACATCAATGGTAAAATGAAATCCACAGTGACACTTGAGTTCACTAAATGCAAGGTGATCACATTATACCCTGTGATCGTCGAGGGTACAACAATTAACGTGACATTGGCCTCGGCAAGTAGCTCCACCCTACCTCCGATCATCAGTGCAATGGAAGTGTTCACAAGAGTGGATCATGAAAAGAGTTCATCTCCTCCTCCTCCTTCCCCAGCCTCACATGGAACTAGAGGAACTTCTTTTGTGTGCACATTAGTATCGTTTCTTGTGTTTGTTTGTTTCTTCTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

394

Amino Acids

43.65

Weight (kDa)

5.73

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 27 - 352 4.3e-66 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 743
AccI GTMKAC 1 cut(s) 371
AciI CCGC 3 cut(s) 87, 668, 747
AclWI GGATC 3 cut(s) 104, 145, 1071
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 4 cut(s) 102, 276, 542, 979
AfiI CCNNNNNNNGG 3 cut(s) 289, 550, 866
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 2 cut(s) 76, 197
AjnI CCWGG 2 cut(s) 581, 865
AleI CACNNNNGTG 1 cut(s) 1058
AluBI AGCT 3 cut(s) 509, 821, 1014
AluI AGCT 3 cut(s) 509, 821, 1014
Alw21I GWGCWC 1 cut(s) 1139
Alw26I GTCTC 2 cut(s) 326, 548
Alw44I GTGCAC 1 cut(s) 1135
AlwI GGATC 3 cut(s) 104, 145, 1071
AoxI GGCC 2 cut(s) 401, 999
ApaLI GTGCAC 1 cut(s) 1135
Asp700I GAANNNNTTC 1 cut(s) 510
AspLEI GCGC 1 cut(s) 744
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 611, 958
BaeGI GKGCMC 1 cut(s) 1139
BaeI ACNNNNGTAYC 2 cut(s) 1128, 1161
BauI CACGAG 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 1139
BccI CCATC 6 cut(s) 63, 311, 343, 470, 544, 780
BciT130I CCWGG 2 cut(s) 583, 867
BciVI GTATCC 1 cut(s) 589
BclI TGATCA 1 cut(s) 948
BcoDI GTCTC 2 cut(s) 326, 548
BfaI CTAG 2 cut(s) 503, 1116
BfuI GTATCC 1 cut(s) 589
Bme1390I CCNGG 2 cut(s) 583, 867
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 486, 525
BmrFI CCNGG 2 cut(s) 583, 867
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 808
BoxI GACNNNNGTC 1 cut(s) 131
BplI GAGNNNNNCTC 2 cut(s) 1066, 1098
BpuEI CTTGAG 2 cut(s) 417, 947
Bsa29I ATCGAT 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 893
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 1002
BsaXI ACNNNNNCTCC 2 cut(s) 1009, 1039
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 550, 866
Bse1I ACTGG 1 cut(s) 814
Bse3DI GCAATG 1 cut(s) 1047
Bse8I GATNNNNATC 1 cut(s) 893
BseBI CCWGG 2 cut(s) 583, 867
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 1002
BseGI GGATG 3 cut(s) 74, 481, 772
BseJI GATNNNNATC 1 cut(s) 893
BseLI CCNNNNNNNGG 3 cut(s) 289, 550, 866
BseMI GCAATG 1 cut(s) 1047
BseNI ACTGG 1 cut(s) 814
BseRI GAGGAG 3 cut(s) 1074, 1077, 1080
BseSI GKGCMC 1 cut(s) 1139
BseYI CCCAGC 1 cut(s) 1099
BshFI GGCC 2 cut(s) 403, 1001
BshVI ATCGAT 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 1139
BsiWI CGTACG 1 cut(s) 274
BslI CCNNNNNNNGG 3 cut(s) 289, 550, 866
BsmAI GTCTC 2 cut(s) 326, 548
BsnI GGCC 2 cut(s) 403, 1001
Bso31I GGTCTC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 1139
Bsp143I GATC 8 cut(s) 109, 150, 215, 888, 948, 966, 1029, 1063
BspACI CCGC 3 cut(s) 87, 668, 747
BspANI GGCC 2 cut(s) 403, 1001
BspDI ATCGAT 1 cut(s) 81
BspHI TCATGA 2 cut(s) 412, 1066
BspLI GGNNCC 2 cut(s) 486, 525
BspPI GGATC 3 cut(s) 104, 145, 1071
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 1047
BsrI ACTGG 1 cut(s) 814
BssECI CCNNGG 1 cut(s) 1002
BssMI GATC 8 cut(s) 109, 150, 215, 888, 948, 966, 1029, 1063
BssSI CACGAG 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 2 cut(s) 583, 867
Bst4CI ACNGT 5 cut(s) 95, 274, 359, 376, 919
Bst6I CTCTTC 1 cut(s) 58
BstBAI YACGTR 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 546
BstENI CCTNNNNNAGG 1 cut(s) 864
BstF5I GGATG 3 cut(s) 74, 481, 772
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 8 cut(s) 112, 153, 218, 891, 951, 969, 1032, 1066
BstMAI GTCTC 2 cut(s) 326, 548
BstMBI GATC 8 cut(s) 109, 150, 215, 888, 948, 966, 1029, 1063
BstNI CCWGG 2 cut(s) 583, 867
BstPAI GACNNNNGTC 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 581, 865
BstSLI GKGCMC 1 cut(s) 1139
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 81
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 2 cut(s) 403, 1001
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 3 cut(s) 74, 481, 772
BtsIMutI CAGTG 4 cut(s) 100, 741, 924, 1042
CciI TCATGA 2 cut(s) 412, 1066
CfoI GCGC 1 cut(s) 744
Cfr13I GGNCC 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 81
Csp6I GTAC 4 cut(s) 101, 275, 541, 978
CviAII CATG 4 cut(s) 129, 413, 1067, 1109
CviQI GTAC 4 cut(s) 101, 275, 541, 978
DdeI CTNAG 1 cut(s) 546
DpnI GATC 8 cut(s) 111, 152, 217, 890, 950, 968, 1031, 1065
DpnII GATC 8 cut(s) 109, 150, 215, 888, 948, 966, 1029, 1063
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 657
Eco31I GGTCTC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 864
EcoRII CCWGG 2 cut(s) 581, 865
FaeI CATG 4 cut(s) 132, 416, 1070, 1112
FatI CATG 4 cut(s) 128, 412, 1066, 1108
FbaI TGATCA 1 cut(s) 948
FblI GTMKAC 1 cut(s) 371
FokI GGATG 3 cut(s) 81, 488, 759
FspBI CTAG 2 cut(s) 503, 1116
FspI TGCGCA 1 cut(s) 743
GlaI GCGC 1 cut(s) 743
GsaI CCCAGC 1 cut(s) 1103
HaeIII GGCC 2 cut(s) 403, 1001
HhaI GCGC 1 cut(s) 744
Hin1II CATG 4 cut(s) 132, 416, 1070, 1112
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 3 cut(s) 286, 755, 879
HphI GGTGA 2 cut(s) 611, 958
Hpy166II GTNNAC 5 cut(s) 372, 615, 933, 1053, 1137
Hpy188I TCNGA 5 cut(s) 215, 231, 631, 888, 1029
Hpy188III TCNNGA 3 cut(s) 325, 413, 1067
Hpy8I GTNNAC 5 cut(s) 372, 615, 933, 1053, 1137
Hpy99I CGWCG 2 cut(s) 376, 974
HpyAV CCTTC 2 cut(s) 392, 1104
HpyCH4III ACNGT 5 cut(s) 95, 274, 359, 376, 919
HpyCH4IV ACGT 2 cut(s) 103, 990
HpyCH4V TGCA 6 cut(s) 187, 466, 678, 942, 1040, 1137
HpyF3I CTNAG 1 cut(s) 546
HpySE526I ACGT 2 cut(s) 103, 990
Hsp92II CATG 4 cut(s) 132, 416, 1070, 1112
HspAI GCGC 1 cut(s) 742
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 8 cut(s) 109, 150, 215, 888, 948, 966, 1029, 1063
LmnI GCTCC 2 cut(s) 529, 1019
LweI GCATC 1 cut(s) 171
MaeI CTAG 2 cut(s) 503, 1116
MaeII ACGT 2 cut(s) 103, 990
MaeIII GTNAC 5 cut(s) 58, 89, 133, 919, 991
MalI GATC 8 cut(s) 111, 152, 217, 890, 950, 968, 1031, 1065
MboI GATC 8 cut(s) 109, 150, 215, 888, 948, 966, 1029, 1063
MboII GAAGA 4 cut(s) 45, 209, 489, 1162
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 1139
MluCI AATT 3 cut(s) 241, 532, 984
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 6 cut(s) 14, 33, 45, 471, 531, 987
MslI CAYNNNNRTG 1 cut(s) 1058
MspR9I CCNGG 2 cut(s) 583, 867
MvaI CCWGG 2 cut(s) 583, 867
NdeII GATC 8 cut(s) 109, 150, 215, 888, 948, 966, 1029, 1063
NlaIII CATG 4 cut(s) 132, 416, 1070, 1112
NlaIV GGNNCC 2 cut(s) 486, 525
NmeAIII GCCGAG 1 cut(s) 983
NmuCI GTSAC 4 cut(s) 58, 133, 919, 991
NsbI TGCGCA 1 cut(s) 743
OliI CACNNNNGTG 1 cut(s) 1058
PagI TCATGA 2 cut(s) 412, 1066
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 3 cut(s) 286, 755, 879
Pfl23II CGTACG 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 581
Ppu21I YACGTR 1 cut(s) 104
PshAI GACNNNNGTC 1 cut(s) 131
Psp6I CCWGG 2 cut(s) 581, 865
PspFI CCCAGC 1 cut(s) 1099
PspGI CCWGG 2 cut(s) 581, 865
PspLI CGTACG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 486, 525
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 4 cut(s) 102, 276, 542, 979
RsaNI GTAC 4 cut(s) 101, 275, 541, 978
RseI CAYNNNNRTG 1 cut(s) 1058
SalI GTCGAC 1 cut(s) 370
SaqAI TTAA 6 cut(s) 14, 33, 45, 471, 531, 987
Sau3AI GATC 8 cut(s) 109, 150, 215, 888, 948, 966, 1029, 1063
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 583, 867
SduI GDGCHC 1 cut(s) 1139
SfaNI GCATC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 1058
SmlI CTYRAG 2 cut(s) 432, 926
SmoI CTYRAG 2 cut(s) 432, 926
Sse9I AATT 3 cut(s) 241, 532, 984
SsiI CCGC 3 cut(s) 87, 668, 747
SspMI CTAG 2 cut(s) 503, 1116
StyD4I CCNGG 2 cut(s) 581, 865
TaaI ACNGT 5 cut(s) 95, 274, 359, 376, 919
TaiI ACGT 2 cut(s) 106, 993
TaqI TCGA 8 cut(s) 10, 29, 81, 326, 342, 371, 570, 972
TasI AATT 3 cut(s) 241, 532, 984
TfiI GAWTC 3 cut(s) 286, 755, 879
Tru1I TTAA 6 cut(s) 14, 33, 45, 471, 531, 987
Tru9I TTAA 6 cut(s) 14, 33, 45, 471, 531, 987
TscAI CASTG 4 cut(s) 100, 741, 924, 1042
TseFI GTSAC 4 cut(s) 58, 133, 919, 991
Tsp45I GTSAC 4 cut(s) 58, 133, 919, 991
TspGWI ACGGA 2 cut(s) 504, 778
TspRI CASTG 4 cut(s) 100, 741, 924, 1042
VneI GTGCAC 1 cut(s) 1135
XagI CCTNNNNNAGG 1 cut(s) 864
XmiI GTMKAC 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 2 cut(s) 503, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.