MD01G1117700.v1.1

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0005545
Physical Location & Seq
Reverse (-)
23153909 .. 23154781
873 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1117700.v1.1.491

Sequence Viewer

Length: 696 bp
ATGAATACAAATTTATGGGTACCGGCGCTTCTTCTAGCCTTCCATTTATTCCGCACTTCGTCTCAGATTACAATCGGATGGCTGAACATTGACTGCGGTAGCAATGCTACAAGCTGGGATAAAAACTTACTCCAATGGGTCACAGACAATGACTACACCAAGGCAGGCATCAACAAGCAAGTTCCACAAAAGCAACCACTTGAAGAAATGAACACCCTCCGATCATTCCCTAACCAAAACCAGCAAAATTGTTATGTTTTGCCTTACAATGCACCTACTCAGCGGTACTTGATCAGGGCGGGCTTCTACTACGGAGACTCTGATGGTCTCTCCCGCCCTCCGCCGTTTGATCTTCGTATCAACGGCCAAAAGTGGTCAACGGTCAAAGCATCAACGGCGGAAGGGCCATTGTACCATGAAGCGATGTATGTGAATCAAGGGTCAGGATCTCTCAATGTGTGTGTTGTGCAGGTTGAGAAGGGAATGGTTCCCTTTGTATCTTCAATAGAAGCTGTTCCAATATATGTTCTTACAGGTCCATTGTACCCTAAGATGGAGACCAGTTACGCTTATGATCTAATATCTCGGGTTAATCTTGGTGGCAATGAAGTAAGGTATTCCCCTCTCAAATTCTTTGGTGTCAATTTACCATTTTTATTCTCTGCATCTTTATCACACAACATATGTGACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

232

Amino Acids

26.03

Weight (kDa)

6.81

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 30 - 206 2.3e-37 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 460
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AciI CCGC 7 cut(s) 52, 96, 283, 299, 334, 341, 398
AclWI GGATC 1 cut(s) 454
AcoI YGGCCR 1 cut(s) 364
AcsI RAATTY 2 cut(s) 10, 629
AfaI GTAC 4 cut(s) 21, 287, 413, 545
AfiI CCNNNNNNNGG 1 cut(s) 553
AgsI TTSAA 2 cut(s) 203, 504
AluBI AGCT 2 cut(s) 114, 512
AluI AGCT 2 cut(s) 114, 512
Alw26I GTCTC 4 cut(s) 66, 309, 332, 551
AlwI GGATC 1 cut(s) 454
Ama87I CYCGRG 1 cut(s) 585
AoxI GGCC 2 cut(s) 364, 404
ApoI RAATTY 2 cut(s) 10, 629
Asp700I GAANNNNTTC 1 cut(s) 513
Asp718I GGTACC 1 cut(s) 19
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 404, 536
AvaI CYCGRG 1 cut(s) 585
AvaII GGWCC 1 cut(s) 536
BanI GGYRCC 1 cut(s) 19
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BccI CCATC 3 cut(s) 72, 317, 547
BceAI ACGGC 3 cut(s) 328, 379, 411
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 4 cut(s) 66, 309, 332, 551
BfaI CTAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 460
Bme18I GGWCC 1 cut(s) 536
BmeT110I CYCGRG 1 cut(s) 585
BmgT120I GGNCC 2 cut(s) 404, 536
BmiI GGNNCC 2 cut(s) 21, 489
BmsI GCATC 3 cut(s) 177, 398, 674
BsaBI GATNNNNATC 1 cut(s) 71
BsaI GGTCTC 2 cut(s) 332, 551
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 561
Bse3DI GCAATG 2 cut(s) 109, 610
Bse8I GATNNNNATC 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 83
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMI GCAATG 2 cut(s) 109, 610
BseMII CTCAG 2 cut(s) 77, 293
BseNI ACTGG 1 cut(s) 561
BseYI CCCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 488
BshFI GGCC 2 cut(s) 366, 406
BshNI GGYRCC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 585
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 4 cut(s) 66, 309, 332, 551
BsmBI CGTCTC 1 cut(s) 66
BsnI GGCC 2 cut(s) 366, 406
Bso31I GGTCTC 2 cut(s) 332, 551
BsoBI CYCGRG 1 cut(s) 585
Bsp143I GATC 5 cut(s) 221, 291, 349, 446, 574
BspACI CCGC 7 cut(s) 52, 96, 283, 299, 334, 341, 398
BspANI GGCC 2 cut(s) 366, 406
BspCNI CTCAG 2 cut(s) 76, 292
BspLI GGNNCC 2 cut(s) 21, 489
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 2 cut(s) 332, 551
BsrDI GCAATG 2 cut(s) 109, 610
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 561
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 5 cut(s) 221, 291, 349, 446, 574
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 166, 301
BstDEI CTNAG 3 cut(s) 63, 279, 549
BstF5I GGATG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 5 cut(s) 224, 294, 352, 449, 577
BstMAI GTCTC 4 cut(s) 66, 309, 332, 551
BstMBI GATC 5 cut(s) 221, 291, 349, 446, 574
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BsuRI GGCC 2 cut(s) 366, 406
BtgZI GCGATG 1 cut(s) 437
BtsCI GGATG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 166, 301
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 404, 536
Csp6I GTAC 4 cut(s) 20, 286, 412, 544
CviAII CATG 1 cut(s) 416
CviJI RGCY 7 cut(s) 38, 82, 114, 303, 366, 406, 512
CviKI_1 RGCY 7 cut(s) 38, 82, 114, 303, 366, 406, 512
CviQI GTAC 4 cut(s) 20, 286, 412, 544
DdeI CTNAG 3 cut(s) 63, 279, 549
DpnI GATC 5 cut(s) 223, 293, 351, 448, 576
DpnII GATC 5 cut(s) 221, 291, 349, 446, 574
EaeI YGGCCR 1 cut(s) 364
EciI GGCGGA 2 cut(s) 330, 413
Eco130I CCWWGG 1 cut(s) 159
Eco31I GGTCTC 2 cut(s) 332, 551
Eco47I GGWCC 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 1 cut(s) 419
FaiI YATR 9 cut(s) 16, 255, 417, 429, 523, 525, 573, 683, 685
FatI CATG 1 cut(s) 415
FauI CCCGC 2 cut(s) 292, 341
FauNDI CATATG 1 cut(s) 683
FbaI TGATCA 1 cut(s) 291
FokI GGATG 1 cut(s) 90
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 2 cut(s) 366, 406
HapII CCGG 1 cut(s) 23
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 419
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 2 cut(s) 317, 433
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 4 cut(s) 66, 77, 221, 322
Hpy188III TCNNGA 1 cut(s) 444
Hpy8I GTNNAC 1 cut(s) 378
HpyAV CCTTC 3 cut(s) 49, 395, 472
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 272, 469, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 3 cut(s) 63, 279, 549
Hsp92II CATG 1 cut(s) 419
HspAI GCGC 1 cut(s) 26
KpnI GGTACC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 5 cut(s) 221, 291, 349, 446, 574
LpnPI CCDG 9 cut(s) 36, 100, 150, 254, 280, 429, 455, 519, 574
LweI GCATC 3 cut(s) 177, 398, 674
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 3 cut(s) 139, 563, 686
MalI GATC 5 cut(s) 223, 293, 351, 448, 576
MboI GATC 5 cut(s) 221, 291, 349, 446, 574
MboII GAAGA 4 cut(s) 23, 215, 344, 492
MflI RGATCY 1 cut(s) 446
MluCI AATT 4 cut(s) 10, 247, 629, 643
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 3 cut(s) 227, 348, 633
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeI CATATG 1 cut(s) 683
NdeII GATC 5 cut(s) 221, 291, 349, 446, 574
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 2 cut(s) 21, 489
NmuCI GTSAC 2 cut(s) 139, 686
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 1 cut(s) 433
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 21, 489
PspPI GGNCC 2 cut(s) 404, 536
PsuI RGATCY 1 cut(s) 446
RsaI GTAC 4 cut(s) 21, 287, 413, 545
RsaNI GTAC 4 cut(s) 20, 286, 412, 544
SaqAI TTAA 1 cut(s) 591
Sau3AI GATC 5 cut(s) 221, 291, 349, 446, 574
Sau96I GGNCC 2 cut(s) 404, 536
SchI GAGTC 1 cut(s) 311
SetI ASST 6 cut(s) 116, 277, 474, 514, 538, 617
SfaNI GCATC 3 cut(s) 177, 398, 674
SinI GGWCC 1 cut(s) 536
Sse9I AATT 4 cut(s) 10, 247, 629, 643
SsiI CCGC 7 cut(s) 52, 96, 283, 299, 334, 341, 398
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 382
TasI AATT 4 cut(s) 10, 247, 629, 643
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TseFI GTSAC 2 cut(s) 139, 686
Tsp45I GTSAC 2 cut(s) 139, 686
TspDTI ATGAA 4 cut(s) 17, 224, 432, 621
TspGWI ACGGA 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 536
XapI RAATTY 2 cut(s) 10, 629
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.