Rh1DG321700

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005545
Physical Location & Seq
Reverse (-)
54737132 .. 54739370
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG321700.1

Sequence Viewer

Length: 870 bp
ATGACATTTTACAGGGTTAAATTGCGCGCTCATTTCGAGCGCGTCAGTCCTCCAACGTTCGATCTTCATCTGGATGGCAAGAAATGGACAACCGTCAAAACTTCAATGATAGGAGACCCAATATATCGTGAAGCCATATATGAGGCCCGATCAGATCATTTTAGCCTGTGCGTTGTCCGAGTTAAGGATGGAGGGGTGCCTTTTATTTCTTCAATAGAGGTTGTTCCATTGGAGGCTCCATTTCCTTTGTACCCTAAGATGCAAAGCAGTCACACTTTCAATCTAGAATCTAGGGTAAACTTGGGTGGTGATGAAGTAATAAGGTACACAGGAATTTTATCAGATGAAAAGTACAACCGGATATGGACTCGTGGAGTAACTCCACCAAACTGCGATGAAGTCACTACCGATTCGGATTCCTCCACAGAAAATGAGCCTCCTGATGAGGTGATCGGCGACTCCATAGAATCACAAAATCTCACTAATCCGATAACCTTGTCCGTTGATATCTCACAAACGCCGACTCCACAATCAGCTTACATTGTGCTCTATTTCGCCGAAAAGACATTCCTAGAAGCTGGAGACATCAGAATAATTCAAATCTACATCGACGACCATATGAAGTCCACAGTGACACTTGAGTTCAACAAATGCAAGGTGATCACCATATATCCTGTGATTCCTGTTGGTCCTAGGATGAGTGTGACTTTGGCCTCGGACAGTGGTTCCAACCTACCTCCGATGATCAGTGCAATGGAAGTGTTCACAACGTTAGATAAAAGCTCCGCTCCTATCCTCCACTGTCGCTTCTTCTGTGCACTCATTAATTTCGTAATTTCTTGTACCTGTGTTTTTCTGTTTTTAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

289

Amino Acids

32.4

Weight (kDa)

5.09

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 15 - 256 3.8e-36 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AccBSI CCGCTC 1 cut(s) 788
AccII CGCG 2 cut(s) 27, 42
AciI CCGC 1 cut(s) 786
AclI AACGTT 2 cut(s) 56, 770
AcsI RAATTY 1 cut(s) 333
AfaI GTAC 4 cut(s) 251, 326, 353, 844
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 5 cut(s) 105, 213, 280, 599, 646
AluBI AGCT 3 cut(s) 536, 578, 783
AluI AGCT 3 cut(s) 536, 578, 783
Alw21I GWGCWC 2 cut(s) 549, 820
Alw26I GTCTC 2 cut(s) 108, 576
Alw44I GTGCAC 1 cut(s) 816
AoxI GGCC 2 cut(s) 144, 711
ApaLI GTGCAC 1 cut(s) 816
ApoI RAATTY 1 cut(s) 333
AseI ATTAAT 1 cut(s) 825
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 3 cut(s) 27, 29, 42
AspS9I GGNCC 2 cut(s) 145, 689
AsuHPI GGTGA 4 cut(s) 320, 460, 655, 670
AvaII GGWCC 1 cut(s) 689
AvrII CCTAGG 1 cut(s) 692
BaeGI GKGCMC 1 cut(s) 820
BanI GGYRCC 1 cut(s) 196
BauI CACGAG 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 549, 820
BccI CCATC 2 cut(s) 68, 182
BclI TGATCA 2 cut(s) 660, 744
BcoDI GTCTC 2 cut(s) 108, 576
BfaI CTAG 4 cut(s) 284, 291, 572, 693
BlnI CCTAGG 1 cut(s) 692
Bme18I GGWCC 1 cut(s) 689
BmgT120I GGNCC 2 cut(s) 145, 689
BmiI GGNNCC 3 cut(s) 198, 237, 727
BmsI GCATC 1 cut(s) 249
BoxI GACNNNNGTC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 600
BpuEI CTTGAG 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 692, 714
BsaWI WCCGGW 1 cut(s) 357
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 759
Bse8I GATNNNNATC 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 692, 714
BseGI GGATG 3 cut(s) 79, 193, 702
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 759
BsePI GCGCGC 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 820
Bsh1236I CGCG 2 cut(s) 27, 42
BshFI GGCC 2 cut(s) 146, 713
BshNI GGYRCC 1 cut(s) 196
BsiHKAI GWGCWC 2 cut(s) 549, 820
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 108, 576
BsnI GGCC 2 cut(s) 146, 713
Bso31I GGTCTC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 549, 820
Bsp143I GATC 6 cut(s) 61, 149, 154, 450, 660, 744
BspACI CCGC 1 cut(s) 786
BspANI GGCC 2 cut(s) 146, 713
BspFNI CGCG 2 cut(s) 27, 42
BspLI GGNNCC 3 cut(s) 198, 237, 727
BspT107I GGYRCC 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 759
BssECI CCNNGG 2 cut(s) 692, 714
BssHII GCGCGC 1 cut(s) 25
BssMI GATC 6 cut(s) 61, 149, 154, 450, 660, 744
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 692
Bst2BI CACGAG 1 cut(s) 369
Bst4CI ACNGT 4 cut(s) 94, 631, 722, 803
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 79, 193, 702
BstFNI CGCG 2 cut(s) 27, 42
BstHHI GCGC 3 cut(s) 27, 29, 42
BstKTI GATC 6 cut(s) 64, 152, 157, 453, 663, 747
BstMAI GTCTC 2 cut(s) 108, 576
BstMBI GATC 6 cut(s) 61, 149, 154, 450, 660, 744
BstPAI GACNNNNGTC 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 820
BstUI CGCG 2 cut(s) 27, 42
BsuRI GGCC 2 cut(s) 146, 713
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 3 cut(s) 79, 193, 702
BtsIMutI CAGTG 4 cut(s) 636, 727, 754, 799
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 3 cut(s) 27, 29, 42
Cfr13I GGNCC 2 cut(s) 145, 689
CseI GACGC 1 cut(s) 31
Csp6I GTAC 4 cut(s) 250, 325, 352, 843
CviQI GTAC 4 cut(s) 250, 325, 352, 843
DdeI CTNAG 1 cut(s) 255
DpnI GATC 6 cut(s) 63, 151, 156, 452, 662, 746
DpnII GATC 6 cut(s) 61, 149, 154, 450, 660, 744
Eco130I CCWWGG 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 108
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 689
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 692
FauNDI CATATG 1 cut(s) 618
FbaI TGATCA 2 cut(s) 660, 744
FokI GGATG 3 cut(s) 86, 200, 709
FspBI CTAG 4 cut(s) 284, 291, 572, 693
GlaI GCGC 3 cut(s) 26, 28, 41
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 2 cut(s) 146, 713
HapII CCGG 1 cut(s) 358
HgaI GACGC 1 cut(s) 31
HhaI GCGC 3 cut(s) 27, 29, 42
Hin6I GCGC 3 cut(s) 25, 27, 40
HinP1I GCGC 3 cut(s) 25, 27, 40
HinfI GANTC 8 cut(s) 287, 367, 410, 416, 458, 467, 523, 679
HpaII CCGG 1 cut(s) 358
HphI GGTGA 4 cut(s) 320, 460, 655, 670
Hpy166II GTNNAC 5 cut(s) 298, 327, 627, 765, 818
Hpy188I TCNGA 8 cut(s) 154, 179, 343, 415, 489, 590, 718, 741
Hpy188III TCNNGA 4 cut(s) 71, 128, 284, 440
Hpy8I GTNNAC 5 cut(s) 298, 327, 627, 765, 818
Hpy99I CGWCG 1 cut(s) 614
HpyCH4III ACNGT 4 cut(s) 94, 631, 722, 803
HpyCH4IV ACGT 2 cut(s) 56, 770
HpyCH4V TGCA 4 cut(s) 262, 654, 752, 818
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 2 cut(s) 56, 770
HspAI GCGC 3 cut(s) 25, 27, 40
Ksp22I TGATCA 2 cut(s) 660, 744
Kzo9I GATC 6 cut(s) 61, 149, 154, 450, 660, 744
LmnI GCTCC 3 cut(s) 241, 788, 793
LpnPI CCDG 9 cut(s) 56, 179, 315, 371, 453, 564, 687, 696, 859
LweI GCATC 1 cut(s) 249
MaeI CTAG 4 cut(s) 284, 291, 572, 693
MaeII ACGT 2 cut(s) 56, 770
MaeIII GTNAC 5 cut(s) 269, 376, 400, 631, 703
MalI GATC 6 cut(s) 63, 151, 156, 452, 662, 746
MbiI CCGCTC 1 cut(s) 788
MboI GATC 6 cut(s) 61, 149, 154, 450, 660, 744
MboII GAAGA 3 cut(s) 56, 201, 802
MhlI GDGCHC 2 cut(s) 549, 820
MluCI AATT 5 cut(s) 20, 333, 594, 826, 834
MlyI GAGTC 3 cut(s) 361, 452, 517
MmeI TCCRAC 2 cut(s) 77, 753
MseI TTAA 3 cut(s) 18, 183, 825
MslI CAYNNNNRTG 1 cut(s) 72
MspI CCGG 1 cut(s) 358
MvnI CGCG 2 cut(s) 27, 42
NdeI CATATG 1 cut(s) 618
NdeII GATC 6 cut(s) 61, 149, 154, 450, 660, 744
NlaIV GGNNCC 3 cut(s) 198, 237, 727
NmuCI GTSAC 4 cut(s) 269, 400, 631, 703
PauI GCGCGC 1 cut(s) 25
PfeI GAWTC 5 cut(s) 287, 410, 416, 467, 679
PleI GAGTC 3 cut(s) 361, 452, 517
PpsI GAGTC 3 cut(s) 361, 452, 517
PshAI GACNNNNGTC 1 cut(s) 92
PshBI ATTAAT 1 cut(s) 825
Psp1406I AACGTT 2 cut(s) 56, 770
PspN4I GGNNCC 3 cut(s) 198, 237, 727
PspPI GGNCC 2 cut(s) 145, 689
PteI GCGCGC 1 cut(s) 25
RsaI GTAC 4 cut(s) 251, 326, 353, 844
RsaNI GTAC 4 cut(s) 250, 325, 352, 843
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 3 cut(s) 18, 183, 825
Sau3AI GATC 6 cut(s) 61, 149, 154, 450, 660, 744
Sau96I GGNCC 2 cut(s) 145, 689
SchI GAGTC 3 cut(s) 361, 452, 517
SduI GDGCHC 2 cut(s) 549, 820
SfaNI GCATC 1 cut(s) 249
SinI GGWCC 1 cut(s) 689
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 5 cut(s) 20, 333, 594, 826, 834
SsiI CCGC 1 cut(s) 786
SspMI CTAG 4 cut(s) 284, 291, 572, 693
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 4 cut(s) 94, 631, 722, 803
TaiI ACGT 2 cut(s) 59, 773
TaqI TCGA 3 cut(s) 36, 60, 609
TasI AATT 5 cut(s) 20, 333, 594, 826, 834
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 5 cut(s) 287, 410, 416, 467, 679
Tru1I TTAA 3 cut(s) 18, 183, 825
Tru9I TTAA 3 cut(s) 18, 183, 825
TscAI CASTG 4 cut(s) 636, 727, 754, 806
TseFI GTSAC 4 cut(s) 269, 400, 631, 703
Tsp45I GTSAC 4 cut(s) 269, 400, 631, 703
TspDTI ATGAA 5 cut(s) 56, 327, 360, 411, 635
TspGWI ACGGA 1 cut(s) 490
TspRI CASTG 4 cut(s) 636, 727, 754, 806
VneI GTGCAC 1 cut(s) 816
VpaK11BI GGWCC 1 cut(s) 689
VspI ATTAAT 1 cut(s) 825
XapI RAATTY 1 cut(s) 333
XbaI TCTAGA 1 cut(s) 283
XmaJI CCTAGG 1 cut(s) 692
XspI CTAG 4 cut(s) 284, 291, 572, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.