Rw7G029070

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005545
Physical Location & Seq
Forward (+)
40076969 .. 40079448
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029070.1

Sequence Viewer

Length: 600 bp
ATGGTCACCATCTACCCTGTGATTGCCGTAGGTCCCACAATCAATAATGTGACATTGGCCTCGGGCACAACCGGATGGTTGAACATAGATTGTGGGAGTGACACCCCACGCTTGGACGCCAACACCTTACTCTCATGGGACACAGACAGTGGTTTAATCAAATCAGGCATCAACAAATATGTCTCAGAAAAGCAACAACAAAAAAAGGTGCGCTACTTGATTCGTGCAGGGTTCTGTTATGGCAACTACGATGGTCTCTCTAGTCCTCCAACGTTCGACCTTCATCTAGATGGCAAGAAATGGACAACCGTCAAAACTTCAATGATAGGAGATCCAATATATCGTGAAGCCATATATGAGGCCCGATCAGATCATATTAGCCTGTGCGTTGTCCGAGTTAAGGATGGAGGGGTGCCTTTTATTTCTTCAATAGAGGTTGTTCCATTGGAGGCTGCATTTCCTTTGTACCCTAAGATGCAAAGCAGTCACACTTTCAATCTAGAATCTAGGGTAAACTTGGGTGGGGATGAAGTAATAAGGTATTTCTTTTTTCCTGTTATTTTTCTTTTCAAGTTCTGTATGCATAGTTGTTCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

199

Amino Acids

22.19

Weight (kDa)

6.88

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 67 - 181 4.1e-26 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AclI AACGTT 1 cut(s) 272
AclWI GGATC 1 cut(s) 326
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 112, 400
AgsI TTSAA 5 cut(s) 82, 321, 429, 496, 571
Alw26I GTCTC 2 cut(s) 187, 260
AlwI GGATC 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 2 cut(s) 57, 360
ApeKI GCWGC 1 cut(s) 452
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 2 cut(s) 32, 361
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 412
BbvI GCAGC 1 cut(s) 439
BccI CCATC 5 cut(s) 17, 69, 245, 284, 398
BceAI ACGGC 1 cut(s) 11
BcoDI GTCTC 2 cut(s) 187, 260
BfaI CTAG 4 cut(s) 261, 287, 500, 507
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 32, 361
BmiI GGNNCC 2 cut(s) 34, 414
BmsI GCATC 2 cut(s) 177, 465
BoxI GACNNNNGTC 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 400
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 80, 409, 532
BseLI CCNNNNNNNGG 2 cut(s) 112, 400
BseMII CTCAG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 2 cut(s) 59, 362
BshNI GGYRCC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 2 cut(s) 18, 152
BslI CCNNNNNNNGG 2 cut(s) 112, 400
BsmAI GTCTC 2 cut(s) 187, 260
BsmFI GGGAC 2 cut(s) 18, 152
BsnI GGCC 2 cut(s) 59, 362
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 331, 365, 370
BspANI GGCC 2 cut(s) 59, 362
BspCNI CTCAG 1 cut(s) 197
BspLI GGNNCC 2 cut(s) 34, 414
BspPI GGATC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 412
BspTNI GGTCTC 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 3 cut(s) 331, 365, 370
BssNI GRCGYC 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 149, 310
BstACI GRCGYC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 184, 471
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 3 cut(s) 80, 409, 532
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 3 cut(s) 334, 368, 373
BstMAI GTCTC 2 cut(s) 187, 260
BstMBI GATC 3 cut(s) 331, 365, 370
BstPAI GACNNNNGTC 1 cut(s) 308
BstPI GGTNACC 1 cut(s) 4
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 2 cut(s) 59, 362
BtsCI GGATG 3 cut(s) 80, 409, 532
BtsIMutI CAGTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 32, 361
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 466
CviAII CATG 1 cut(s) 135
CviJI RGCY 5 cut(s) 59, 350, 362, 381, 452
CviKI_1 RGCY 5 cut(s) 59, 350, 362, 381, 452
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 2 cut(s) 184, 471
DpnI GATC 3 cut(s) 333, 367, 372
DpnII GATC 3 cut(s) 331, 365, 370
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 61
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 32
EcoO65I GGTNACC 1 cut(s) 4
EcoT22I ATGCAT 1 cut(s) 585
FaeI CATG 1 cut(s) 138
FaqI GGGAC 2 cut(s) 18, 152
FatI CATG 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 3 cut(s) 87, 416, 539
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 4 cut(s) 261, 287, 500, 507
GlaI GCGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 453
HaeIII GGCC 2 cut(s) 59, 362
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 138
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HinfI GANTC 2 cut(s) 220, 503
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 187, 370, 395
Hpy188III TCNNGA 3 cut(s) 287, 344, 500
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 149, 310
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 227, 455, 478, 583
HpyF3I CTNAG 2 cut(s) 184, 471
HpySE526I ACGT 1 cut(s) 272
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 138
HspAI GCGC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 331, 365, 370
LpnPI CCDG 6 cut(s) 30, 85, 150, 213, 395, 567
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 2 cut(s) 177, 465
MaeI CTAG 4 cut(s) 261, 287, 500, 507
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 4 cut(s) 4, 49, 98, 485
MalI GATC 3 cut(s) 333, 367, 372
MboI GATC 3 cut(s) 331, 365, 370
MboII GAAGA 1 cut(s) 417
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 6 cut(s) 70, 276, 352, 401, 427, 442
Mph1103I ATGCAT 1 cut(s) 585
MseI TTAA 2 cut(s) 155, 399
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 1 cut(s) 72
NdeII GATC 3 cut(s) 331, 365, 370
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 2 cut(s) 34, 414
NmuCI GTSAC 4 cut(s) 4, 49, 98, 485
NsiI ATGCAT 1 cut(s) 585
PfeI GAWTC 2 cut(s) 220, 503
PkrI GCNGC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 32
PshAI GACNNNNGTC 1 cut(s) 308
Psp1406I AACGTT 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 34, 414
PspPI GGNCC 2 cut(s) 32, 361
PspPPI RGGWCCY 1 cut(s) 32
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 155, 399
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 3 cut(s) 331, 365, 370
Sau96I GGNCC 2 cut(s) 32, 361
SduI GDGCHC 1 cut(s) 68
SetI ASST 7 cut(s) 34, 128, 210, 275, 282, 438, 542
SfaNI GCATC 2 cut(s) 177, 465
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 288
SspMI CTAG 4 cut(s) 261, 287, 500, 507
TaaI ACNGT 2 cut(s) 149, 310
TaiI ACGT 1 cut(s) 275
TaqI TCGA 1 cut(s) 276
TfiI GAWTC 2 cut(s) 220, 503
Tru1I TTAA 2 cut(s) 155, 399
Tru9I TTAA 2 cut(s) 155, 399
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 4 cut(s) 4, 49, 98, 485
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 4 cut(s) 4, 49, 98, 485
TspDTI ATGAA 2 cut(s) 272, 543
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 32
XbaI TCTAGA 2 cut(s) 286, 499
XspI CTAG 4 cut(s) 261, 287, 500, 507
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.