Rh1AG328500

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005545
Physical Location & Seq
Reverse (-)
56126989 .. 56142742
15754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG328500.1

Sequence Viewer

Length: 1290 bp
ATGGCAACTATGATGGTCTCTCGAACCCTCCATCGTTCGAAATTCATATCGACGGCCAAAAATGGTCGACTGTCAAAACATCAACCGTGGGAGAAGGGCCAATATACCGTGAAGCCTTGTATGAGACTCAAGGTCACTATTGGATGGTTGAACATCGATTGCGGGAACAGTGTTGTACGTGTAGATCCCACAAACTTACTGACATGGGTCACAGACAAGGATTTGATCCAAACGGGCATCAACAAAGAAGTTCCACAAAAGCAATCACTTGAAGAAATGAACACCCTCCGTTCATTCCCAAATCAGACACCACAAAATTGCTATGCTTTGCCAGTCAATAAGCAAACCGTACGCTACCTGATTCGGGTTGGGTTCTACTATGGCAACTATGATGGTCTCTCAAACCCTCCATCGTTCGATATTCATATCGATGGTCAAAAATGGTCGACAGTCAAAACATCAACTTTGGGAGAAGGGCCAATGTATCATGAAGCCTTGTATGAAACTCAAGGGTCAGGTTCTATTAGTCTTTGCGTTGTGCAAGTTAAGGATGGAGGGGTTCCCTTTATTTCTTCAATAGAAGCTGTTCCGTTATTGGCTCCTTTTAATCCATTGTACCCTGAGATGGAGACAAACAACACTTTCGATTTAGTATCCAGGATAAACTTTGGTGGTGATGAAATAAGGTTCACAGGGTTATTATCAGAAAACTATAACCGAATATGGACACGAGGAACAACTCCGCCAAACTGCAACGAAGTTTCTACCTTACCAGATATACTCTCCCCAGAAAATGACCCTCCTATTTCAGTGTTGCGCACCGCCATAGAATCAATAGACCTTACCCATCCAATAACCTTGCCCGTTAGCCTCTCGCAAACAAACCCCCAGTCAGCTTACTTTGTGCTCTATTTTACCGAAACGACAAGCCTACCTAAACCAGGCGACACCAGAATAATTCAGATCAACATCAATGGTCAAATGAAATCCACAGTGACACTTGAGTTCACTAAATGCAAGCCTGATGGTGACGTCGTCGTCGTTTGCCGCAAAGTTGAGGATCTTGGCCATGCTTGGGAGGACAATTCCCAAAGAGATGGGCCGATCGCAGTGCTAGTGATTGAAGGCGTCAGTTCTGAGCCGCAAGGCCACCAGAGACAAATAGCTGGGATCCAAGGCTTGGAGGCAGAGCTCGGTTGGCCATACACCTTCATCGTCTCGATGAATTGCTCGCCATTCACCTTCATCGTCTCCATGAACACCAGAATTTCCTTGAGGACCGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

429

Amino Acids

47.84

Weight (kDa)

5.73

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 52 - 331 5e-55 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1037
AatII GACGTC 1 cut(s) 1035
Acc16I TGCGCA 1 cut(s) 818
AccB7I CCANNNNNTGG 1 cut(s) 1180
AccI GTMKAC 2 cut(s) 67, 446
AciI CCGC 5 cut(s) 162, 743, 822, 1048, 1142
AclWI GGATC 5 cut(s) 179, 220, 1068, 1165, 1178
AcoI YGGCCR 3 cut(s) 54, 1066, 1199
AcsI RAATTY 2 cut(s) 41, 1266
AcyI GRCGYC 2 cut(s) 1032, 1128
AfaI GTAC 3 cut(s) 177, 351, 617
AfiI CCNNNNNNNGG 5 cut(s) 364, 625, 941, 1075, 1180
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 4 cut(s) 151, 272, 576, 1124
AhdI GACNNNNNGTC 1 cut(s) 131
AjnI CCWGG 2 cut(s) 656, 940
AluBI AGCT 4 cut(s) 584, 896, 1166, 1192
AluI AGCT 4 cut(s) 584, 896, 1166, 1192
Alw21I GWGCWC 2 cut(s) 909, 1194
Alw26I GTCTC 7 cut(s) 22, 118, 401, 623, 1150, 1222, 1255
AlwI GGATC 5 cut(s) 179, 220, 1068, 1165, 1178
AoxI GGCC 7 cut(s) 54, 97, 476, 1066, 1100, 1147, 1199
ApoI RAATTY 2 cut(s) 41, 1266
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
Asp700I GAANNNNTTC 1 cut(s) 585
AspLEI GCGC 1 cut(s) 819
AspS9I GGNCC 4 cut(s) 97, 476, 1100, 1278
AsuHPI GGTGA 3 cut(s) 686, 1040, 1231
AsuII TTCGAA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 1278
BalI TGGCCA 2 cut(s) 1068, 1201
BamHI GGATCC 1 cut(s) 1170
BanII GRGCYC 1 cut(s) 1194
BauI CACGAG 1 cut(s) 729
Bbv12I GWGCWC 2 cut(s) 909, 1194
BceAI ACGGC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 1093, 1127
BciT130I CCWGG 2 cut(s) 658, 942
BciVI GTATCC 1 cut(s) 664
BcoDI GTCTC 7 cut(s) 22, 118, 401, 623, 1150, 1222, 1255
BfaI CTAG 1 cut(s) 1115
BfuI GTATCC 1 cut(s) 664
BisI GCNGC 2 cut(s) 1048, 1142
BlsI GCNGC 2 cut(s) 1049, 1143
Bme1390I CCNGG 2 cut(s) 658, 942
Bme18I GGWCC 1 cut(s) 1278
BmeRI GACNNNNNGTC 1 cut(s) 131
BmgT120I GGNCC 4 cut(s) 97, 476, 1100, 1278
BmiI GGNNCC 3 cut(s) 561, 600, 1172
BmrFI CCNGG 2 cut(s) 658, 942
BmrI ACTGGG 1 cut(s) 883
BmsI GCATC 2 cut(s) 246, 1273
BmuI ACTGGG 1 cut(s) 883
BoxI GACNNNNGTC 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 3 cut(s) 113, 492, 1022
Bsa29I ATCGAT 2 cut(s) 156, 429
BsaAI YACGTR 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 968
BsaHI GRCGYC 2 cut(s) 1032, 1128
BsaI GGTCTC 2 cut(s) 22, 401
BsaJI CCNNGG 2 cut(s) 86, 1174
Bsc4I CCNNNNNNNGG 5 cut(s) 364, 625, 941, 1075, 1180
Bse1I ACTGG 2 cut(s) 332, 889
Bse8I GATNNNNATC 1 cut(s) 968
BseBI CCWGG 2 cut(s) 658, 942
BseCI ATCGAT 2 cut(s) 156, 429
BseDI CCNNGG 2 cut(s) 86, 1174
BseGI GGATG 3 cut(s) 149, 556, 847
BseJI GATNNNNATC 1 cut(s) 968
BseLI CCNNNNNNNGG 5 cut(s) 364, 625, 941, 1075, 1180
BseMII CTCAG 2 cut(s) 612, 1128
BseNI ACTGG 2 cut(s) 332, 889
BseYI CCCAGC 1 cut(s) 1166
Bsh1285I CGRYCG 1 cut(s) 1107
BshFI GGCC 7 cut(s) 56, 99, 478, 1068, 1102, 1149, 1201
BshVI ATCGAT 2 cut(s) 156, 429
BsiEI CGRYCG 1 cut(s) 1107
BsiHKAI GWGCWC 2 cut(s) 909, 1194
BsiWI CGTACG 1 cut(s) 349
BslI CCNNNNNNNGG 5 cut(s) 364, 625, 941, 1075, 1180
BsmAI GTCTC 7 cut(s) 22, 118, 401, 623, 1150, 1222, 1255
BsmBI CGTCTC 2 cut(s) 1222, 1255
BsnI GGCC 7 cut(s) 56, 99, 478, 1068, 1102, 1149, 1201
Bso31I GGTCTC 2 cut(s) 22, 401
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 909, 1194
Bsp143I GATC 6 cut(s) 184, 225, 963, 1060, 1104, 1170
BspACI CCGC 5 cut(s) 162, 743, 822, 1048, 1142
BspANI GGCC 7 cut(s) 56, 99, 478, 1068, 1102, 1149, 1201
BspCNI CTCAG 2 cut(s) 613, 1129
BspDI ATCGAT 2 cut(s) 156, 429
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 3 cut(s) 561, 600, 1172
BspPI GGATC 5 cut(s) 179, 220, 1068, 1165, 1178
BspT104I TTCGAA 1 cut(s) 38
BspTNI GGTCTC 2 cut(s) 22, 401
BsrI ACTGG 2 cut(s) 332, 889
BssECI CCNNGG 2 cut(s) 86, 1174
BssMI GATC 6 cut(s) 184, 225, 963, 1060, 1104, 1170
BssNI GRCGYC 2 cut(s) 1032, 1128
BssSI CACGAG 1 cut(s) 729
BssT1I CCWWGG 1 cut(s) 1174
Bst2BI CACGAG 1 cut(s) 729
Bst2UI CCWGG 2 cut(s) 658, 942
Bst4CI ACNGT 7 cut(s) 72, 87, 109, 170, 349, 451, 994
BstACI GRCGYC 2 cut(s) 1032, 1128
BstBAI YACGTR 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 1019, 1232
BstDEI CTNAG 2 cut(s) 621, 1137
BstDSI CCRYGG 1 cut(s) 86
BstENI CCTNNNNNAGG 1 cut(s) 939
BstF5I GGATG 3 cut(s) 149, 556, 847
BstHHI GCGC 1 cut(s) 819
BstKTI GATC 6 cut(s) 187, 228, 966, 1063, 1107, 1173
BstMAI GTCTC 7 cut(s) 22, 118, 401, 623, 1150, 1222, 1255
BstMBI GATC 6 cut(s) 184, 225, 963, 1060, 1104, 1170
BstMCI CGRYCG 1 cut(s) 1107
BstMWI GCNNNNNNNGC 1 cut(s) 1198
BstNI CCWGG 2 cut(s) 658, 942
BstPAI GACNNNNGTC 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 656, 940
BstX2I RGATCY 3 cut(s) 184, 1060, 1170
BstXI CCANNNNNNTGG 1 cut(s) 1097
BstYI RGATCY 3 cut(s) 184, 1060, 1170
Bsu15I ATCGAT 2 cut(s) 156, 429
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 7 cut(s) 56, 99, 478, 1068, 1102, 1149, 1201
BsuTUI ATCGAT 2 cut(s) 156, 429
BtgI CCRYGG 1 cut(s) 86
BtsCI GGATG 3 cut(s) 149, 556, 847
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 4 cut(s) 175, 816, 999, 1116
Cac8I GCNNGC 2 cut(s) 1019, 1232
CciI TCATGA 1 cut(s) 487
CfoI GCGC 1 cut(s) 819
Cfr13I GGNCC 4 cut(s) 97, 476, 1100, 1278
ClaI ATCGAT 2 cut(s) 156, 429
CseI GACGC 1 cut(s) 1117
Csp6I GTAC 3 cut(s) 176, 350, 616
CviAII CATG 4 cut(s) 204, 488, 1070, 1255
CviQI GTAC 3 cut(s) 176, 350, 616
DdeI CTNAG 2 cut(s) 621, 1137
DpnI GATC 6 cut(s) 186, 227, 965, 1062, 1106, 1172
DpnII GATC 6 cut(s) 184, 225, 963, 1060, 1104, 1170
DrdI GACNNNNNNGTC 1 cut(s) 1037
DriI GACNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 1037
EaeI YGGCCR 3 cut(s) 54, 1066, 1199
Eam1105I GACNNNNNGTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 732
Ecl136II GAGCTC 1 cut(s) 1192
Eco130I CCWWGG 1 cut(s) 1174
Eco24I GRGCYC 1 cut(s) 1194
Eco31I GGTCTC 2 cut(s) 22, 401
Eco47I GGWCC 1 cut(s) 1278
Eco53kI GAGCTC 1 cut(s) 1192
EcoICRI GAGCTC 1 cut(s) 1192
EcoNI CCTNNNNNAGG 1 cut(s) 939
EcoRII CCWGG 2 cut(s) 656, 940
EcoT14I CCWWGG 1 cut(s) 1174
EcoT38I GRGCYC 1 cut(s) 1194
ErhI CCWWGG 1 cut(s) 1174
Esp3I CGTCTC 2 cut(s) 1222, 1255
FaeI CATG 4 cut(s) 207, 491, 1073, 1258
FatI CATG 4 cut(s) 203, 487, 1069, 1254
FauI CCCGC 1 cut(s) 155
FblI GTMKAC 2 cut(s) 67, 446
Fnu4HI GCNGC 2 cut(s) 1048, 1142
FokI GGATG 3 cut(s) 156, 563, 834
FriOI GRGCYC 1 cut(s) 1194
Fsp4HI GCNGC 2 cut(s) 1048, 1142
FspBI CTAG 1 cut(s) 1115
FspI TGCGCA 1 cut(s) 818
GlaI GCGC 1 cut(s) 818
GluI GCNGC 2 cut(s) 1048, 1142
GsaI CCCAGC 1 cut(s) 1170
HaeIII GGCC 7 cut(s) 56, 99, 478, 1068, 1102, 1149, 1201
HgaI GACGC 1 cut(s) 1117
HhaI GCGC 1 cut(s) 819
Hin1I GRCGYC 2 cut(s) 1032, 1128
Hin1II CATG 4 cut(s) 207, 491, 1073, 1258
Hin6I GCGC 1 cut(s) 817
HinP1I GCGC 1 cut(s) 817
HincII GTYRAC 2 cut(s) 68, 447
HindII GTYRAC 2 cut(s) 68, 447
HinfI GANTC 3 cut(s) 126, 361, 830
HphI GGTGA 3 cut(s) 686, 1040, 1231
Hpy166II GTNNAC 4 cut(s) 68, 447, 690, 1008
Hpy188I TCNGA 4 cut(s) 306, 706, 963, 1138
Hpy188III TCNNGA 3 cut(s) 21, 488, 1219
Hpy8I GTNNAC 4 cut(s) 68, 447, 690, 1008
Hpy99I CGWCG 4 cut(s) 55, 1037, 1040, 1043
HpyAV CCTTC 5 cut(s) 88, 467, 1118, 1219, 1252
HpyCH4III ACNGT 7 cut(s) 72, 87, 109, 170, 349, 451, 994
HpyCH4IV ACGT 2 cut(s) 178, 1032
HpyCH4V TGCA 3 cut(s) 541, 753, 1017
HpyF10VI GCNNNNNNNGC 1 cut(s) 1198
HpyF3I CTNAG 2 cut(s) 621, 1137
HpySE526I ACGT 2 cut(s) 178, 1032
Hsp92I GRCGYC 2 cut(s) 1032, 1128
Hsp92II CATG 4 cut(s) 207, 491, 1073, 1258
HspAI GCGC 1 cut(s) 817
Kzo9I GATC 6 cut(s) 184, 225, 963, 1060, 1104, 1170
LmnI GCTCC 1 cut(s) 604
LweI GCATC 2 cut(s) 246, 1273
MaeI CTAG 1 cut(s) 1115
MaeII ACGT 2 cut(s) 178, 1032
MaeIII GTNAC 4 cut(s) 133, 208, 994, 1028
MalI GATC 6 cut(s) 186, 227, 965, 1062, 1106, 1172
MboI GATC 6 cut(s) 184, 225, 963, 1060, 1104, 1170
MboII GAAGA 2 cut(s) 284, 564
MflI RGATCY 3 cut(s) 184, 1060, 1170
MhlI GDGCHC 2 cut(s) 909, 1194
MlsI TGGCCA 2 cut(s) 1068, 1201
MluCI AATT 6 cut(s) 41, 316, 957, 1084, 1225, 1266
MluNI TGGCCA 2 cut(s) 1068, 1201
MlyI GAGTC 1 cut(s) 120
Mox20I TGGCCA 2 cut(s) 1068, 1201
MroXI GAANNNNTTC 1 cut(s) 585
MscI TGGCCA 2 cut(s) 1068, 1201
MseI TTAA 2 cut(s) 546, 606
MslI CAYNNNNRTG 1 cut(s) 429
Msp20I TGGCCA 2 cut(s) 1068, 1201
MspR9I CCNGG 2 cut(s) 658, 942
MvaI CCWGG 2 cut(s) 658, 942
MwoI GCNNNNNNNGC 1 cut(s) 1198
NdeII GATC 6 cut(s) 184, 225, 963, 1060, 1104, 1170
NlaIII CATG 4 cut(s) 207, 491, 1073, 1258
NlaIV GGNNCC 3 cut(s) 561, 600, 1172
NmuCI GTSAC 4 cut(s) 133, 208, 994, 1028
NsbI TGCGCA 1 cut(s) 818
NspV TTCGAA 1 cut(s) 38
PagI TCATGA 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 1038
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 2 cut(s) 361, 830
Pfl23II CGTACG 1 cut(s) 349
PflFI GACNNNGTC 1 cut(s) 1034
PflMI CCANNNNNTGG 1 cut(s) 1180
PfoI TCCNGGA 1 cut(s) 656
PkrI GCNGC 2 cut(s) 1049, 1143
Ple19I CGATCG 1 cut(s) 1107
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
Ppu21I YACGTR 1 cut(s) 179
PshAI GACNNNNGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 1194
Psp6I CCWGG 2 cut(s) 656, 940
PspFI CCCAGC 1 cut(s) 1166
PspGI CCWGG 2 cut(s) 656, 940
PspLI CGTACG 1 cut(s) 349
PspN4I GGNNCC 3 cut(s) 561, 600, 1172
PspPI GGNCC 4 cut(s) 97, 476, 1100, 1278
PsuI RGATCY 3 cut(s) 184, 1060, 1170
PsyI GACNNNGTC 1 cut(s) 1034
PvuI CGATCG 1 cut(s) 1107
RsaI GTAC 3 cut(s) 177, 351, 617
RsaNI GTAC 3 cut(s) 176, 350, 616
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 1194
SalI GTCGAC 2 cut(s) 66, 445
SaqAI TTAA 2 cut(s) 546, 606
SatI GCNGC 2 cut(s) 1048, 1142
Sau3AI GATC 6 cut(s) 184, 225, 963, 1060, 1104, 1170
Sau96I GGNCC 4 cut(s) 97, 476, 1100, 1278
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 2 cut(s) 658, 942
SduI GDGCHC 2 cut(s) 909, 1194
SfaNI GCATC 2 cut(s) 246, 1273
SfuI TTCGAA 1 cut(s) 38
SinI GGWCC 1 cut(s) 1278
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 4 cut(s) 128, 507, 1001, 1273
SmoI CTYRAG 4 cut(s) 128, 507, 1001, 1273
Sse9I AATT 6 cut(s) 41, 316, 957, 1084, 1225, 1266
SsiI CCGC 5 cut(s) 162, 743, 822, 1048, 1142
SspMI CTAG 1 cut(s) 1115
SstI GAGCTC 1 cut(s) 1194
StyD4I CCNGG 2 cut(s) 656, 940
StyI CCWWGG 1 cut(s) 1174
TaaI ACNGT 7 cut(s) 72, 87, 109, 170, 349, 451, 994
TaiI ACGT 2 cut(s) 181, 1035
TasI AATT 6 cut(s) 41, 316, 957, 1084, 1225, 1266
TauI GCSGC 2 cut(s) 1050, 1144
TfiI GAWTC 2 cut(s) 361, 830
Tru1I TTAA 2 cut(s) 546, 606
Tru9I TTAA 2 cut(s) 546, 606
TscAI CASTG 4 cut(s) 175, 816, 999, 1116
TseFI GTSAC 4 cut(s) 133, 208, 994, 1028
Tsp45I GTSAC 4 cut(s) 133, 208, 994, 1028
TspGWI ACGGA 2 cut(s) 278, 579
TspRI CASTG 4 cut(s) 175, 816, 999, 1116
Tth111I GACNNNGTC 1 cut(s) 1034
Van91I CCANNNNNTGG 1 cut(s) 1180
VpaK11BI GGWCC 1 cut(s) 1278
XagI CCTNNNNNAGG 1 cut(s) 939
XapI RAATTY 2 cut(s) 41, 1266
XmiI GTMKAC 2 cut(s) 67, 446
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 1 cut(s) 1115
ZraI GACGTC 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.