RLG00000027442

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005545
Physical Location & Seq
Forward (+)
11712636 .. 11714258
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027442

Sequence Viewer

Length: 1155 bp
ATGCATCTACTTGATTTTTCTCTGTTCCTATTTACACTATTATATGTAAATAGTGTAAATGAATATGGCACAATCGGATGGTTGAACATAGATTGTGGGAGTGACACCCCACGCTTGGACGCCAACACCTTACTCTCATGGGACACAGACAGTGGTTTAATCAAATCAGGCATCAACAAATATGTCTCAGAAAAGCAACAACTCGACGAGATGAACACCGTTCGGTCCTTCCTTAAGGGAAAACAAAATTGTTATAAATTGAAGGTCTACAAAAAAAAGGTGCGGTACTTGATTCGTACAGGGTTCTGTTATGGCAACTACGATGGTCTCTCTAGTCCTCCAACGTTCGATCTTCATCTGGATCACAAGAAATGGACAACCATCAAAACTTCAATGATAGGAGACCCAATATATCGTGAAGCCATATATGAGGCCCGATCAGATCATATTAGCCTGTGCGTTGTCCGAGTTAAGGATGGAGGAGTGCCTTTTATTTCTTCAATAGAGGTTGTTCCATTGGAGGCTCCATTTCCTTTGTACCCTAAGATGCAAAGCAGTCACACTTTCAATCTAGAATCTAGGGTAAACTTGGGTGGGGATGTAGTAAGGTACACAGGAATCTTATCAGATGAAAAGTACAACCGGATATGGACTCGTGGAGTAACTCCACCAAACTGCGATGGAGTCACTACCGATTCGGATTCCTCCACAGAAAATGAGCCTCCTGATGAGGTGATCGGCCACTCCATAGAATCACAAAATCTCACTAATCCGATAACCTTGTCCGTTGATATCTCACAAACGCCGACTCCACAATCAGCTTACATTGTGCTCTATTTCGCCGAAAAGACATTCCTAGAAACTGGAGACATCAGAATAATTCAAATCTACATCGACGACCATATGAAGTCCACAGTGACACTTGAGTTCAAGAAATGCAAGGTGATCACCATATATCCTGTGATTCCTGTTGGTCCTAGGATGAGTGTGACTTTAGCCTCGGACAGTGGTTCCAACCTACCTCCGATGATCAGTGCAATGGAAGTGTTCACAACGTTAGATAAAAGCTCCGCTCCTATTCTCCACTGTCGCTTCTTCTGTGCACCCATTAATTTTGTAATTTCTTGTACCTGTTTGTTTCTGTTTTTAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

385

Amino Acids

43.15

Weight (kDa)

5.79

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 30 - 351 1.1e-61 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 1073
AccI GTMKAC 1 cut(s) 267
AciI CCGC 2 cut(s) 283, 1071
AclI AACGTT 2 cut(s) 344, 1055
AclWI GGATC 1 cut(s) 369
AcoI YGGCCR 1 cut(s) 739
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 6 cut(s) 287, 298, 539, 611, 638, 1129
AfiI CCNNNNNNNGG 2 cut(s) 115, 472
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 7 cut(s) 85, 262, 393, 501, 568, 884, 931
AluBI AGCT 2 cut(s) 821, 1068
AluI AGCT 2 cut(s) 821, 1068
Alw21I GWGCWC 2 cut(s) 834, 1105
Alw26I GTCTC 4 cut(s) 190, 332, 396, 861
Alw44I GTGCAC 1 cut(s) 1101
AlwI GGATC 1 cut(s) 369
AoxI GGCC 2 cut(s) 432, 739
ApaLI GTGCAC 1 cut(s) 1101
AseI ATTAAT 1 cut(s) 1110
AspA2I CCTAGG 1 cut(s) 977
AspS9I GGNCC 3 cut(s) 225, 433, 974
AsuHPI GGTGA 3 cut(s) 745, 940, 955
AvaII GGWCC 2 cut(s) 225, 974
AvrII CCTAGG 1 cut(s) 977
BaeGI GKGCMC 1 cut(s) 1105
BauI CACGAG 1 cut(s) 654
Bbv12I GWGCWC 2 cut(s) 834, 1105
BccI CCATC 5 cut(s) 72, 317, 389, 470, 674
BclI TGATCA 2 cut(s) 945, 1029
BcoDI GTCTC 4 cut(s) 190, 332, 396, 861
BfaI CTAG 5 cut(s) 333, 572, 579, 857, 978
BfrI CTTAAG 1 cut(s) 233
BlnI CCTAGG 1 cut(s) 977
Bme18I GGWCC 2 cut(s) 225, 974
BmgT120I GGNCC 3 cut(s) 225, 433, 974
BmiI GGNNCC 2 cut(s) 525, 1012
BmsI GCATC 3 cut(s) 13, 180, 537
BpmI CTGGAG 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 2 cut(s) 332, 396
BsaJI CCNNGG 2 cut(s) 977, 999
BsaWI WCCGGW 1 cut(s) 642
BsaXI ACNNNNNCTCC 2 cut(s) 793, 823
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 472
Bse1I ACTGG 1 cut(s) 868
Bse3DI GCAATG 1 cut(s) 1044
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 977, 999
BseGI GGATG 4 cut(s) 83, 481, 604, 987
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 115, 472
BseMI GCAATG 1 cut(s) 1044
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 868
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 1105
BshFI GGCC 2 cut(s) 434, 741
BsiHKAI GWGCWC 2 cut(s) 834, 1105
BsiSI CCGG 1 cut(s) 643
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 115, 472
BsmAI GTCTC 4 cut(s) 190, 332, 396, 861
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 434, 741
Bso31I GGTCTC 2 cut(s) 332, 396
Bsp1286I GDGCHC 2 cut(s) 834, 1105
Bsp143I GATC 7 cut(s) 349, 361, 437, 442, 735, 945, 1029
BspACI CCGC 2 cut(s) 283, 1071
BspANI GGCC 2 cut(s) 434, 741
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 525, 1012
BspPI GGATC 1 cut(s) 369
BspTI CTTAAG 1 cut(s) 233
BspTNI GGTCTC 2 cut(s) 332, 396
BsrBI CCGCTC 1 cut(s) 1073
BsrDI GCAATG 1 cut(s) 1044
BsrI ACTGG 1 cut(s) 868
BssECI CCNNGG 2 cut(s) 977, 999
BssMI GATC 7 cut(s) 349, 361, 437, 442, 735, 945, 1029
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 654
BssT1I CCWWGG 1 cut(s) 977
Bst2BI CACGAG 1 cut(s) 654
Bst4CI ACNGT 5 cut(s) 152, 220, 916, 1007, 1088
BstACI GRCGYC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 187, 543
BstF5I GGATG 4 cut(s) 83, 481, 604, 987
BstKTI GATC 7 cut(s) 352, 364, 440, 445, 738, 948, 1032
BstMAI GTCTC 4 cut(s) 190, 332, 396, 861
BstMBI GATC 7 cut(s) 349, 361, 437, 442, 735, 945, 1029
BstSLI GKGCMC 1 cut(s) 1105
BsuRI GGCC 2 cut(s) 434, 741
BtgZI GCGATG 1 cut(s) 693
BtsCI GGATG 4 cut(s) 83, 481, 604, 987
BtsIMutI CAGTG 5 cut(s) 157, 921, 1012, 1039, 1084
Cfr13I GGNCC 3 cut(s) 225, 433, 974
CseI GACGC 1 cut(s) 128
Csp6I GTAC 6 cut(s) 286, 297, 538, 610, 637, 1128
CviAII CATG 1 cut(s) 138
CviQI GTAC 6 cut(s) 286, 297, 538, 610, 637, 1128
DdeI CTNAG 2 cut(s) 187, 543
DpnI GATC 7 cut(s) 351, 363, 439, 444, 737, 947, 1031
DpnII GATC 7 cut(s) 349, 361, 437, 442, 735, 945, 1029
EaeI YGGCCR 1 cut(s) 739
Eco130I CCWWGG 1 cut(s) 977
Eco31I GGTCTC 2 cut(s) 332, 396
Eco32I GATATC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 225, 974
EcoRV GATATC 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 977
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 977
FaeI CATG 1 cut(s) 141
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 137
FauNDI CATATG 1 cut(s) 903
FbaI TGATCA 2 cut(s) 945, 1029
FblI GTMKAC 1 cut(s) 267
FokI GGATG 4 cut(s) 90, 488, 611, 994
FspBI CTAG 5 cut(s) 333, 572, 579, 857, 978
GsuI CTGGAG 1 cut(s) 885
HaeIII GGCC 2 cut(s) 434, 741
HapII CCGG 1 cut(s) 643
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 141
HpaII CCGG 1 cut(s) 643
HphI GGTGA 3 cut(s) 745, 940, 955
Hpy166II GTNNAC 6 cut(s) 268, 586, 612, 912, 1050, 1103
Hpy188III TCNNGA 5 cut(s) 359, 416, 572, 725, 931
Hpy8I GTNNAC 6 cut(s) 268, 586, 612, 912, 1050, 1103
Hpy99I CGWCG 2 cut(s) 209, 899
HpyAV CCTTC 2 cut(s) 238, 256
HpyCH4III ACNGT 5 cut(s) 152, 220, 916, 1007, 1088
HpyCH4IV ACGT 2 cut(s) 344, 1055
HpyCH4V TGCA 5 cut(s) 4, 550, 939, 1037, 1103
HpyF3I CTNAG 2 cut(s) 187, 543
HpySE526I ACGT 2 cut(s) 344, 1055
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 141
Ksp22I TGATCA 2 cut(s) 945, 1029
Kzo9I GATC 7 cut(s) 349, 361, 437, 442, 735, 945, 1029
LmnI GCTCC 3 cut(s) 529, 1073, 1078
LweI GCATC 3 cut(s) 13, 180, 537
MaeI CTAG 5 cut(s) 333, 572, 579, 857, 978
MaeII ACGT 2 cut(s) 344, 1055
MaeIII GTNAC 6 cut(s) 101, 557, 661, 685, 916, 988
MalI GATC 7 cut(s) 351, 363, 439, 444, 737, 947, 1031
MbiI CCGCTC 1 cut(s) 1073
MboI GATC 7 cut(s) 349, 361, 437, 442, 735, 945, 1029
MboII GAAGA 3 cut(s) 344, 489, 1087
MhlI GDGCHC 2 cut(s) 834, 1105
MluCI AATT 5 cut(s) 247, 257, 879, 1111, 1119
MlyI GAGTC 3 cut(s) 646, 693, 802
MmeI TCCRAC 2 cut(s) 365, 1038
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 158, 234, 471, 1110
MspCI CTTAAG 1 cut(s) 233
MspI CCGG 1 cut(s) 643
NdeI CATATG 1 cut(s) 903
NdeII GATC 7 cut(s) 349, 361, 437, 442, 735, 945, 1029
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 2 cut(s) 525, 1012
NmuCI GTSAC 5 cut(s) 101, 557, 685, 916, 988
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 7 cut(s) 292, 575, 618, 695, 701, 752, 964
PleI GAGTC 3 cut(s) 646, 692, 802
PpsI GAGTC 3 cut(s) 646, 692, 802
PshBI ATTAAT 1 cut(s) 1110
PsiI TTATAA 1 cut(s) 255
Psp1406I AACGTT 2 cut(s) 344, 1055
PspN4I GGNNCC 2 cut(s) 525, 1012
PspPI GGNCC 3 cut(s) 225, 433, 974
RsaI GTAC 6 cut(s) 287, 298, 539, 611, 638, 1129
RsaNI GTAC 6 cut(s) 286, 297, 538, 610, 637, 1128
SaqAI TTAA 4 cut(s) 158, 234, 471, 1110
Sau3AI GATC 7 cut(s) 349, 361, 437, 442, 735, 945, 1029
Sau96I GGNCC 3 cut(s) 225, 433, 974
SchI GAGTC 3 cut(s) 646, 693, 802
SduI GDGCHC 2 cut(s) 834, 1105
SfaNI GCATC 3 cut(s) 13, 180, 537
SinI GGWCC 2 cut(s) 225, 974
SmlI CTYRAG 2 cut(s) 233, 923
SmoI CTYRAG 2 cut(s) 233, 923
Sse9I AATT 5 cut(s) 247, 257, 879, 1111, 1119
SsiI CCGC 2 cut(s) 283, 1071
SspMI CTAG 5 cut(s) 333, 572, 579, 857, 978
StyI CCWWGG 1 cut(s) 977
TaaI ACNGT 5 cut(s) 152, 220, 916, 1007, 1088
TaiI ACGT 2 cut(s) 347, 1058
TaqI TCGA 3 cut(s) 204, 348, 894
TaqII GACCGA 1 cut(s) 213
TasI AATT 5 cut(s) 247, 257, 879, 1111, 1119
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 7 cut(s) 292, 575, 618, 695, 701, 752, 964
Tru1I TTAA 4 cut(s) 158, 234, 471, 1110
Tru9I TTAA 4 cut(s) 158, 234, 471, 1110
TscAI CASTG 5 cut(s) 157, 921, 1012, 1039, 1091
TseFI GTSAC 5 cut(s) 101, 557, 685, 916, 988
Tsp45I GTSAC 5 cut(s) 101, 557, 685, 916, 988
TspDTI ATGAA 5 cut(s) 75, 227, 344, 645, 920
TspGWI ACGGA 1 cut(s) 775
TspRI CASTG 5 cut(s) 157, 921, 1012, 1039, 1091
Vha464I CTTAAG 1 cut(s) 233
VneI GTGCAC 1 cut(s) 1101
VpaK11BI GGWCC 2 cut(s) 225, 974
VspI ATTAAT 1 cut(s) 1110
XbaI TCTAGA 1 cut(s) 571
XmaJI CCTAGG 1 cut(s) 977
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 5 cut(s) 333, 572, 579, 857, 978
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.