Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005545

Physical Location & Seq

Genomic Coordinates Reverse (-)

25222277 .. 25223806

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G225100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGATAAAAATTTCTGGGTACCAGTGCTTCTCCTGGTATTTCATTTGTTCACCGCTTCTTCTCAAATCACAATAGAATGGTTGAACATTGACTGCGGTAACAATGCTCTACGTGTGGATAAAAACTCGCTCCGATGGGTCACAGACAATGACTACACGCAAGCAGGCATCAACAAGCAAGTTCCACAAAAGCAAAAACTTGAAGAGATGAACACCCTCCGATCCTTCCCTAACAAGGCACAACAAAACTGCTATGCTTTACCTTTCAGTGAGGAAACCCAACGGGTCTTGGTCAGGGCAGGCTTCTACTACGGCAACTACGATGGTCTTTCGAAGCCTCCTTCGTTTGATATTCATATTAACGGTAGAAATTGGTCAACGGTCAACACATCAACGGTGGTGGAAGGGCCAATATACCATGAAGCCATGTATGTGAATCAAGGGGCAGGATCTCTTAATGTGTGTATTGTGCAGGATGAGAGTGGAGTGGTTCCCTTTATATCTTCAATAGAAGCTGTTCCAATTTCGGTTACATTGTACCCTGAGATGGAGACCAACTATGCTTATAACCTAGTATCTAGGATTAACTATGGTGGTGGAGAAATGTTACAATTAATACACCAACGACTAATAATCACTCACACGTTGTCTATTTTATTGGATTATGATATGTTAGATTTTGATCGAGAATGTACAAAAATTGCTGAATGTAGGTTCCCAGGGATATTGGGTGAGGAATACAACCGAGTATGGACAGGTGGAACAATCCCACCAAACTGCACCGAAGTCACTACCTTACCAGATCCCTTATCTTTTCCAGAAAACGACCCTCCCATTTCTGTGTTGACCGACTCCATTGAATCAATGAACCTTGCTGATCCAATCACCTTGTCCATTGATCTCCCACAGACGACCCCACAATTAGCCTACCTTGTGCTCTATTTCACCGAAACGGTAACCCTCCCCAAACCAAACGACAGCAGGATAATTCAGATCTACATCAACGGCCAGATGAAGTCTACGGTGACATCTGAGTACAACAAATGTAAGGTGATCACCGTATACCCTGTGACAGTTGTGGGACCTACGATCAATGTGACATTGGCCTCAGCTAATGGGTCAACCCTGCCTCCTATAATCAGTGCCATGGAAGTGTTCACAAGAATAGAGGCCAACAAGGGTGATAAGAGTTCTTCTCCTCCCTCTTCCACTCCCTCTCATGGCACACAAGGACACTTCTTTTATGCATACATTAATTCCATTTATTGTATTTGCTTGCTTCTTCTATTCATAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

433

Amino Acids

48.22

Weight (kDa)

4.89

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20860
malus_domestica	MD01G1117700.v1.1
prunus_persica	Prupe.2G225100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365101 RchiOBHm_Chr7g0221441
rosa_laevigata	RLG00000027442 RLG00000027443 RLG00000027444
rosa_multiflora	Rmu_ssc0000112.1_g000004
rosa_roxburghii	Rroxscaffold_4G00291450 Rroxscaffold_4G00291460 Rroxscaffold_4G00291470 Rroxscaffold_4G00291480
rosa_rugosa	Rorug01G0319600 Rorug01G0319700 Rorug01G0319800 Rorug01G0319800
rosa_samantha	Rh1AG328500 Rh1BG290000 Rh1BG290100 Rh1CG306700 Rh1CG306800 Rh1DG321600 Rh1DG321700 Rh7AG342500 Rh7CG360000 Rh7DG340500
rosa_wichuraiana	Rw1G029150 Rw7G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	2 cut(s)	1019, 1062
AciI	CCGC	2 cut(s)	54, 96
AclWI	GGATC	4 cut(s)	216, 457, 797, 872
AcoI	YGGCCR	1 cut(s)	1006
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	4 cut(s)	21, 539, 694, 1037
AfiI	CCNNNNNNNGG	3 cut(s)	235, 547, 1220
AflIII	ACRYGT	2 cut(s)	112, 642
AgsI	TTSAA	4 cut(s)	85, 203, 507, 860
AjnI	CCWGG	2 cut(s)	33, 718
AluBI	AGCT	2 cut(s)	515, 1112
AluI	AGCT	2 cut(s)	515, 1112
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	4 cut(s)	216, 457, 797, 872
AoxI	GGCC	4 cut(s)	407, 1006, 1104, 1170
ApoI	RAATTY	1 cut(s)	10
AseI	ATTAAT	2 cut(s)	614, 1254
Asp700I	GAANNNNTTC	1 cut(s)	516
Asp718I	GGTACC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	407, 1082
AsuHPI	GGTGA	8 cut(s)	43, 743, 877, 937, 1036, 1048, 1063, 1193
AsuII	TTCGAA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	1082
BanI	GGYRCC	1 cut(s)	19
BarI	GAAGNNNNNNTAC	2 cut(s)	12, 44
Bbv12I	GWGCWC	1 cut(s)	939
BbvCI	CCTCAGC	1 cut(s)	1108
BccI	CCATC	3 cut(s)	129, 317, 541
BceAI	ACGGC	2 cut(s)	328, 1021
BciT130I	CCWGG	2 cut(s)	35, 720
BclI	TGATCA	1 cut(s)	1053
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	2 cut(s)	572, 579
BglII	AGATCT	1 cut(s)	993
Bme1390I	CCNGG	2 cut(s)	35, 720
Bme18I	GGWCC	1 cut(s)	1082
BmgT120I	GGNCC	2 cut(s)	407, 1082
BmiI	GGNNCC	4 cut(s)	21, 492, 716, 1083
BmrFI	CCNGG	2 cut(s)	35, 720
BmsI	GCATC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	1180, 1212
Bpu10I	CCTNAGC	1 cut(s)	1108
Bpu14I	TTCGAA	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	113
BsaBI	GATNNNNATC	2 cut(s)	681, 998
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	718, 719, 1146
BsaXI	ACNNNNNCTCC	2 cut(s)	1114, 1144
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 547, 1220
Bse1I	ACTGG	1 cut(s)	23
Bse8I	GATNNNNATC	2 cut(s)	681, 998
BseBI	CCWGG	2 cut(s)	35, 720
BseDI	CCNNGG	3 cut(s)	718, 719, 1146
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	2 cut(s)	681, 998
BseLI	CCNNNNNNNGG	3 cut(s)	235, 547, 1220
BseMII	CTCAG	3 cut(s)	534, 1023, 1122
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	1188
BsgI	GTGCAG	2 cut(s)	491, 763
BshFI	GGCC	4 cut(s)	409, 1008, 1106, 1172
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	939
BslFI	GGGAC	1 cut(s)	1095
BslI	CCNNNNNNNGG	3 cut(s)	235, 547, 1220
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	1095
BsnI	GGCC	4 cut(s)	409, 1008, 1106, 1172
Bso31I	GGTCTC	1 cut(s)	545
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	939
Bsp1407I	TGTACA	1 cut(s)	692
Bsp143I	GATC	9 cut(s)	221, 449, 682, 802, 877, 898, 993, 1053, 1089
Bsp19I	CCATGG	1 cut(s)	1146
BspACI	CCGC	2 cut(s)	54, 96
BspANI	GGCC	4 cut(s)	409, 1008, 1106, 1172
BspCNI	CTCAG	3 cut(s)	535, 1024, 1121
BspLI	GGNNCC	4 cut(s)	21, 492, 716, 1083
BspPI	GGATC	4 cut(s)	216, 457, 797, 872
BspT104I	TTCGAA	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	545
BsrGI	TGTACA	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	718, 719, 1146
BssMI	GATC	9 cut(s)	221, 449, 682, 802, 877, 898, 993, 1053, 1089
BssNAI	GTATAC	1 cut(s)	1063
BssT1I	CCWWGG	1 cut(s)	1146
Bst1107I	GTATAC	1 cut(s)	1063
Bst2UI	CCWGG	2 cut(s)	35, 720
Bst4CI	ACNGT	7 cut(s)	365, 382, 397, 955, 1024, 1060, 1075
Bst6I	CTCTTC	2 cut(s)	198, 1210
BstAUI	TGTACA	1 cut(s)	692
BstBAI	YACGTR	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	4 cut(s)	162, 166, 301, 1277
BstDEI	CTNAG	3 cut(s)	543, 1032, 1108
BstDSI	CCRYGG	1 cut(s)	1146
BstEII	GGTNACC	1 cut(s)	955
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	9 cut(s)	224, 452, 685, 805, 880, 901, 996, 1056, 1092
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	9 cut(s)	221, 449, 682, 802, 877, 898, 993, 1053, 1089
BstNI	CCWGG	2 cut(s)	35, 720
BstPI	GGTNACC	1 cut(s)	955
BstSCI	CCNGG	2 cut(s)	33, 718
BstX2I	RGATCY	3 cut(s)	449, 802, 993
BstYI	RGATCY	3 cut(s)	449, 802, 993
BstZ17I	GTATAC	1 cut(s)	1063
BsuRI	GGCC	4 cut(s)	409, 1008, 1106, 1172
BtgI	CCRYGG	1 cut(s)	1146
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	30, 274, 1147
Cac8I	GCNNGC	4 cut(s)	162, 166, 301, 1277
Cfr13I	GGNCC	2 cut(s)	407, 1082
Csp6I	GTAC	4 cut(s)	20, 538, 693, 1036
CspCI	CAANNNNNGTGG	2 cut(s)	381, 416
CviAII	CATG	4 cut(s)	419, 427, 1147, 1220
CviQI	GTAC	4 cut(s)	20, 538, 693, 1036
DdeI	CTNAG	3 cut(s)	543, 1032, 1108
DpnI	GATC	9 cut(s)	223, 451, 684, 804, 879, 900, 995, 1055, 1091
DpnII	GATC	9 cut(s)	221, 449, 682, 802, 877, 898, 993, 1053, 1089
EaeI	YGGCCR	1 cut(s)	1006
Eam1104I	CTCTTC	2 cut(s)	198, 1210
EarI	CTCTTC	2 cut(s)	198, 1210
Eco130I	CCWWGG	1 cut(s)	1146
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	1082
Eco91I	GGTNACC	1 cut(s)	955
EcoO109I	RGGNCCY	1 cut(s)	1082
EcoO65I	GGTNACC	1 cut(s)	955
EcoRII	CCWGG	2 cut(s)	33, 718
EcoT14I	CCWWGG	1 cut(s)	1146
EcoT22I	ATGCAT	1 cut(s)	1249
ErhI	CCWWGG	1 cut(s)	1146
FaeI	CATG	4 cut(s)	422, 430, 1150, 1223
FaqI	GGGAC	1 cut(s)	1095
FatI	CATG	4 cut(s)	418, 426, 1146, 1219
FbaI	TGATCA	1 cut(s)	1053
FblI	GTMKAC	2 cut(s)	1019, 1062
FokI	GGATG	1 cut(s)	488
FspBI	CTAG	2 cut(s)	572, 579
HaeIII	GGCC	4 cut(s)	409, 1008, 1106, 1172
Hin1II	CATG	4 cut(s)	422, 430, 1150, 1223
HincII	GTYRAC	4 cut(s)	378, 385, 846, 1122
HindII	GTYRAC	4 cut(s)	378, 385, 846, 1122
HinfI	GANTC	3 cut(s)	436, 851, 860
HphI	GGTGA	8 cut(s)	43, 743, 877, 937, 1036, 1048, 1063, 1193
Hpy166II	GTNNAC	8 cut(s)	51, 378, 385, 846, 1020, 1063, 1122, 1158
Hpy188I	TCNGA	4 cut(s)	134, 221, 993, 1033
Hpy188III	TCNNGA	2 cut(s)	686, 818
Hpy8I	GTNNAC	8 cut(s)	51, 378, 385, 846, 1020, 1063, 1122, 1158
HpyAV	CCTTC	3 cut(s)	235, 351, 398
HpyCH4III	ACNGT	7 cut(s)	365, 382, 397, 955, 1024, 1060, 1075
HpyCH4IV	ACGT	2 cut(s)	112, 644
HpyCH4V	TGCA	3 cut(s)	472, 780, 1247
HpyF3I	CTNAG	3 cut(s)	543, 1032, 1108
HpySE526I	ACGT	2 cut(s)	112, 644
Hsp92II	CATG	4 cut(s)	422, 430, 1150, 1223
KpnI	GGTACC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	1053
Kzo9I	GATC	9 cut(s)	221, 449, 682, 802, 877, 898, 993, 1053, 1089
LmnI	GCTCC	1 cut(s)	135
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	2 cut(s)	572, 579
MaeII	ACGT	2 cut(s)	112, 644
MaeIII	GTNAC	9 cut(s)	98, 139, 529, 606, 787, 955, 1024, 1069, 1096
MalI	GATC	9 cut(s)	223, 451, 684, 804, 879, 900, 995, 1055, 1091
MboI	GATC	9 cut(s)	221, 449, 682, 802, 877, 898, 993, 1053, 1089
MboII	GAAGA	6 cut(s)	51, 215, 495, 1185, 1197, 1274
MflI	RGATCY	3 cut(s)	449, 802, 993
MhlI	GDGCHC	1 cut(s)	939
MluCI	AATT	8 cut(s)	10, 370, 522, 611, 699, 920, 987, 1255
MlyI	GAGTC	1 cut(s)	845
Mph1103I	ATGCAT	1 cut(s)	1249
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	5 cut(s)	360, 456, 585, 614, 1254
MslI	CAYNNNNRTG	3 cut(s)	431, 839, 1151
MspR9I	CCNGG	2 cut(s)	35, 720
MvaI	CCWGG	2 cut(s)	35, 720
NcoI	CCATGG	1 cut(s)	1146
NdeII	GATC	9 cut(s)	221, 449, 682, 802, 877, 898, 993, 1053, 1089
NlaIII	CATG	4 cut(s)	422, 430, 1150, 1223
NlaIV	GGNNCC	4 cut(s)	21, 492, 716, 1083
NmuCI	GTSAC	5 cut(s)	139, 787, 1024, 1069, 1096
NsiI	ATGCAT	1 cut(s)	1249
NspV	TTCGAA	1 cut(s)	332
PasI	CCCWGGG	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	436, 860
PleI	GAGTC	1 cut(s)	845
PpsI	GAGTC	1 cut(s)	845
Ppu21I	YACGTR	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	1082
PshBI	ATTAAT	2 cut(s)	614, 1254
PsiI	TTATAA	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	1082
Psp6I	CCWGG	2 cut(s)	33, 718
PspEI	GGTNACC	1 cut(s)	955
PspGI	CCWGG	2 cut(s)	33, 718
PspN4I	GGNNCC	4 cut(s)	21, 492, 716, 1083
PspPI	GGNCC	2 cut(s)	407, 1082
PspPPI	RGGWCCY	1 cut(s)	1082
PsuI	RGATCY	3 cut(s)	449, 802, 993
RsaI	GTAC	4 cut(s)	21, 539, 694, 1037
RsaNI	GTAC	4 cut(s)	20, 538, 693, 1036
RseI	CAYNNNNRTG	3 cut(s)	431, 839, 1151
SaqAI	TTAA	5 cut(s)	360, 456, 585, 614, 1254
Sau3AI	GATC	9 cut(s)	221, 449, 682, 802, 877, 898, 993, 1053, 1089
Sau96I	GGNCC	2 cut(s)	407, 1082
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	2 cut(s)	35, 720
SduI	GDGCHC	1 cut(s)	939
SfaNI	GCATC	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	332
SinI	GGWCC	1 cut(s)	1082
SmiMI	CAYNNNNRTG	3 cut(s)	431, 839, 1151
Sse9I	AATT	8 cut(s)	10, 370, 522, 611, 699, 920, 987, 1255
SsiI	CCGC	2 cut(s)	54, 96
SspMI	CTAG	2 cut(s)	572, 579
StyD4I	CCNGG	2 cut(s)	33, 718
StyI	CCWWGG	1 cut(s)	1146
TaaI	ACNGT	7 cut(s)	365, 382, 397, 955, 1024, 1060, 1075
TaiI	ACGT	2 cut(s)	115, 647
TaqI	TCGA	2 cut(s)	332, 685
TaqII	GACCGA	1 cut(s)	863
TasI	AATT	8 cut(s)	10, 370, 522, 611, 699, 920, 987, 1255
TatI	WGTACW	2 cut(s)	692, 1035
TfiI	GAWTC	2 cut(s)	436, 860
Tru1I	TTAA	5 cut(s)	360, 456, 585, 614, 1254
Tru9I	TTAA	5 cut(s)	360, 456, 585, 614, 1254
TscAI	CASTG	3 cut(s)	30, 274, 1147
TseFI	GTSAC	5 cut(s)	139, 787, 1024, 1069, 1096
Tsp45I	GTSAC	5 cut(s)	139, 787, 1024, 1069, 1096
TspDTI	ATGAA	7 cut(s)	32, 224, 344, 435, 881, 1028, 1279
TspRI	CASTG	3 cut(s)	30, 274, 1147
VpaK11BI	GGWCC	1 cut(s)	1082
VspI	ATTAAT	2 cut(s)	614, 1254
XapI	RAATTY	1 cut(s)	10
XmiI	GTMKAC	2 cut(s)	1019, 1062
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	2 cut(s)	572, 579
Zsp2I	ATGCAT	1 cut(s)	1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.