RchiOBHm_Chr7g0221441

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005545
Physical Location & Seq
Forward (+)
42479956 .. 42480817
862 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19815

Sequence Viewer

Length: 780 bp
ATGAACACCGTTCGGTCCTTCCTTAAGGGAAAACAAAATCGTTATAAATTGAAGGTCTACAAAAAAAAGGTGCGCTACTTGATTCGTGCAGGGTTCTGTTATGGCAACTACGATGGTCTCTCTAGTCCTCCAACGTTCGACCTTCATCTGGATGGCAAGAAATGGACAACCGTCAAAACTTCAATGATAGGAGACCCAATATATCGTGAAGCCATATATGAGGCCCGATCAGATCATATTAGCCTGTGCGTTGTCCGAGTTAAGGATGGAGGGGTGCCTTTTATTTCTTCAATAGAGGTTGTTCCATTGGAGGCTCCATTTCCTTTGTACCCTAAGATGCAAAGCAGTCACACTTTCAATCTAGAATCTAGAGTAAACTTGGGTGGGGATGAAGTAATAAGGTACACAGGAATCTTATCAGATGAAAAGTACAACCGGATATGGACTCGTGGAGTAACTCCACCAAACTGCGATGAAGTCACTACCGATTCGGATTCCTCCACAGAAAATGAGCCTCCTGATGAGGTGATCAGCGACTCCATAGAATCACAAAATCTCACTAATCCGATAACCTTGTCCGTTGATATCTCACAAACGCCGATTCCACAATCAGCTTACATTGTGCTCTATTTCGCCGAAAAGACATTCCTAGAAGCTGGAGACATCAGAATAATTCAAATCTACATCGACGACCATATGAAGTCCACAGTGACACTTGAGTTCAACAAATGCAAGGTGATCACCATATATCCTGTGATTCCTGTTGGCTGTTGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

259

Amino Acids

29.34

Weight (kDa)

5.87

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 2 - 257 3.2e-46 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 57
AclI AACGTT 1 cut(s) 134
AfaI GTAC 3 cut(s) 329, 404, 431
AfiI CCNNNNNNNGG 2 cut(s) 148, 262
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 6 cut(s) 52, 183, 291, 358, 677, 724
AluBI AGCT 2 cut(s) 614, 656
AluI AGCT 2 cut(s) 614, 656
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 3 cut(s) 122, 186, 654
AoxI GGCC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 3 cut(s) 15, 223, 774
AsuHPI GGTGA 3 cut(s) 538, 733, 748
AvaII GGWCC 2 cut(s) 15, 774
BanI GGYRCC 1 cut(s) 274
BauI CACGAG 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 627
BccI CCATC 3 cut(s) 107, 146, 260
BclI TGATCA 2 cut(s) 528, 738
BcoDI GTCTC 3 cut(s) 122, 186, 654
BfaI CTAG 5 cut(s) 123, 362, 369, 650, 778
BfrI CTTAAG 1 cut(s) 23
Bme18I GGWCC 2 cut(s) 15, 774
BmgT120I GGNCC 3 cut(s) 15, 223, 774
BmiI GGNNCC 2 cut(s) 276, 315
BmsI GCATC 1 cut(s) 327
BoxI GACNNNNGTC 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 737
BsaI GGTCTC 2 cut(s) 122, 186
BsaWI WCCGGW 1 cut(s) 435
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 262
BseGI GGATG 3 cut(s) 157, 271, 394
BseLI CCNNNNNNNGG 2 cut(s) 148, 262
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 627
BsiSI CCGG 1 cut(s) 436
BslI CCNNNNNNNGG 2 cut(s) 148, 262
BsmAI GTCTC 3 cut(s) 122, 186, 654
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 2 cut(s) 122, 186
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 4 cut(s) 227, 232, 528, 738
BspANI GGCC 1 cut(s) 224
BspLI GGNNCC 2 cut(s) 276, 315
BspT107I GGYRCC 1 cut(s) 274
BspTI CTTAAG 1 cut(s) 23
BspTNI GGTCTC 2 cut(s) 122, 186
BssMI GATC 4 cut(s) 227, 232, 528, 738
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 10, 172, 709
BstAFI CTTAAG 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 3 cut(s) 157, 271, 394
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 4 cut(s) 230, 235, 531, 741
BstMAI GTCTC 3 cut(s) 122, 186, 654
BstMBI GATC 4 cut(s) 227, 232, 528, 738
BstPAI GACNNNNGTC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 3 cut(s) 157, 271, 394
BtsIMutI CAGTG 1 cut(s) 714
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 3 cut(s) 15, 223, 774
Csp6I GTAC 3 cut(s) 328, 403, 430
CviJI RGCY 8 cut(s) 212, 224, 243, 314, 514, 614, 656, 768
CviKI_1 RGCY 8 cut(s) 212, 224, 243, 314, 514, 614, 656, 768
CviQI GTAC 3 cut(s) 328, 403, 430
DdeI CTNAG 1 cut(s) 333
DpnI GATC 4 cut(s) 229, 234, 530, 740
DpnII GATC 4 cut(s) 227, 232, 528, 738
Eco31I GGTCTC 2 cut(s) 122, 186
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 15, 774
EcoRV GATATC 1 cut(s) 586
FauNDI CATATG 1 cut(s) 696
FbaI TGATCA 2 cut(s) 528, 738
FblI GTMKAC 1 cut(s) 57
FokI GGATG 3 cut(s) 164, 278, 401
FspBI CTAG 5 cut(s) 123, 362, 369, 650, 778
GlaI GCGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 436
HhaI GCGC 1 cut(s) 75
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HpaII CCGG 1 cut(s) 436
HphI GGTGA 3 cut(s) 538, 733, 748
Hpy166II GTNNAC 4 cut(s) 58, 376, 405, 705
Hpy188I TCNGA 6 cut(s) 232, 257, 421, 493, 567, 668
Hpy188III TCNNGA 5 cut(s) 149, 206, 362, 369, 518
Hpy8I GTNNAC 4 cut(s) 58, 376, 405, 705
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 3 cut(s) 28, 46, 152
HpyCH4III ACNGT 3 cut(s) 10, 172, 709
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 89, 340, 732
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 134
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 2 cut(s) 528, 738
Kzo9I GATC 4 cut(s) 227, 232, 528, 738
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 9 cut(s) 75, 134, 257, 393, 449, 531, 642, 765, 774
LweI GCATC 1 cut(s) 327
MaeI CTAG 5 cut(s) 123, 362, 369, 650, 778
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 4 cut(s) 347, 454, 478, 709
MalI GATC 4 cut(s) 229, 234, 530, 740
MboI GATC 4 cut(s) 227, 232, 528, 738
MboII GAAGA 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 2 cut(s) 47, 672
MlyI GAGTC 2 cut(s) 439, 530
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 8 cut(s) 138, 214, 263, 289, 304, 508, 517, 525
MseI TTAA 2 cut(s) 24, 261
MslI CAYNNNNRTG 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 1 cut(s) 436
NdeI CATATG 1 cut(s) 696
NdeII GATC 4 cut(s) 227, 232, 528, 738
NlaIV GGNNCC 2 cut(s) 276, 315
NmuCI GTSAC 3 cut(s) 347, 478, 709
PfeI GAWTC 8 cut(s) 82, 365, 411, 488, 494, 545, 601, 757
PleI GAGTC 2 cut(s) 439, 530
PpsI GAGTC 2 cut(s) 439, 530
PshAI GACNNNNGTC 1 cut(s) 170
PsiI TTATAA 1 cut(s) 45
Psp1406I AACGTT 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 276, 315
PspPI GGNCC 3 cut(s) 15, 223, 774
RsaI GTAC 3 cut(s) 329, 404, 431
RsaNI GTAC 3 cut(s) 328, 403, 430
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 24, 261
Sau3AI GATC 4 cut(s) 227, 232, 528, 738
Sau96I GGNCC 3 cut(s) 15, 223, 774
SchI GAGTC 2 cut(s) 439, 530
SduI GDGCHC 1 cut(s) 627
SfaNI GCATC 1 cut(s) 327
SinI GGWCC 2 cut(s) 15, 774
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 23, 716
SmoI CTYRAG 2 cut(s) 23, 716
Sse9I AATT 2 cut(s) 47, 672
SspMI CTAG 5 cut(s) 123, 362, 369, 650, 778
TaaI ACNGT 3 cut(s) 10, 172, 709
TaiI ACGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 138, 687
TasI AATT 2 cut(s) 47, 672
TatI WGTACW 1 cut(s) 429
TfiI GAWTC 8 cut(s) 82, 365, 411, 488, 494, 545, 601, 757
Tru1I TTAA 2 cut(s) 24, 261
Tru9I TTAA 2 cut(s) 24, 261
TscAI CASTG 1 cut(s) 714
TseFI GTSAC 3 cut(s) 347, 478, 709
Tsp45I GTSAC 3 cut(s) 347, 478, 709
TspDTI ATGAA 6 cut(s) 17, 134, 405, 438, 489, 713
TspGWI ACGGA 1 cut(s) 568
TspRI CASTG 1 cut(s) 714
Vha464I CTTAAG 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 15, 774
XbaI TCTAGA 2 cut(s) 361, 368
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 5 cut(s) 123, 362, 369, 650, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.