Carbohydrate-binding protein of the ER
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g20860 |
| malus_domestica | MD01G1117700.v1.1 |
| prunus_persica | Prupe.2G225100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0365101 RchiOBHm_Chr7g0221441 |
| rosa_laevigata | RLG00000027442 RLG00000027443 RLG00000027444 |
| rosa_multiflora | Rmu_ssc0000112.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00291450 Rroxscaffold_4G00291460 Rroxscaffold_4G00291470 Rroxscaffold_4G00291480 |
| rosa_rugosa | Rorug01G0319600 Rorug01G0319700 Rorug01G0319800 Rorug01G0319800 |
| rosa_samantha | Rh1AG328500 Rh1BG290000 Rh1BG290100 Rh1CG306700 Rh1CG306800 Rh1DG321600 Rh1DG321700 Rh7AG342500 Rh7CG360000 Rh7DG340500 |
| rosa_wichuraiana | Rw1G029150 Rw7G029070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 272 |
| Acc16I | TGCGCA | 1 cut(s) | 230 |
| Acc36I | ACCTGC | 1 cut(s) | 272 |
| AclWI | GGATC | 1 cut(s) | 165 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 73 |
| AgsI | TTSAA | 1 cut(s) | 244 |
| AleI | CACNNNNGTG | 2 cut(s) | 152, 236 |
| AluBI | AGCT | 1 cut(s) | 108 |
| AluI | AGCT | 1 cut(s) | 108 |
| AlwI | GGATC | 1 cut(s) | 165 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspLEI | GCGC | 1 cut(s) | 231 |
| AsuHPI | GGTGA | 2 cut(s) | 19, 52 |
| BclI | TGATCA | 1 cut(s) | 42 |
| BfaI | CTAG | 2 cut(s) | 102, 210 |
| BfuAI | ACCTGC | 1 cut(s) | 272 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 160, 192 |
| BpmI | CTGGAG | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 1 cut(s) | 96 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 103, 133 |
| Bse3DI | GCAATG | 1 cut(s) | 141 |
| BseDI | CCNNGG | 1 cut(s) | 96 |
| BseMI | GCAATG | 1 cut(s) | 141 |
| BseRI | GAGGAG | 1 cut(s) | 174 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bsp143I | GATC | 4 cut(s) | 42, 60, 123, 157 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspHI | TCATGA | 1 cut(s) | 160 |
| BspMI | ACCTGC | 1 cut(s) | 272 |
| BspPI | GGATC | 1 cut(s) | 165 |
| BsrDI | GCAATG | 1 cut(s) | 141 |
| BssECI | CCNNGG | 1 cut(s) | 96 |
| BssMI | GATC | 4 cut(s) | 42, 60, 123, 157 |
| Bst4CI | ACNGT | 1 cut(s) | 13 |
| BstHHI | GCGC | 1 cut(s) | 231 |
| BstKTI | GATC | 4 cut(s) | 45, 63, 126, 160 |
| BstMBI | GATC | 4 cut(s) | 42, 60, 123, 157 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtsIMutI | CAGTG | 2 cut(s) | 18, 136 |
| BveI | ACCTGC | 1 cut(s) | 272 |
| CciI | TCATGA | 1 cut(s) | 160 |
| CfoI | GCGC | 1 cut(s) | 231 |
| Csp6I | GTAC | 1 cut(s) | 72 |
| CviAII | CATG | 2 cut(s) | 161, 203 |
| CviJI | RGCY | 4 cut(s) | 95, 101, 108, 197 |
| CviKI_1 | RGCY | 4 cut(s) | 95, 101, 108, 197 |
| CviQI | GTAC | 1 cut(s) | 72 |
| DpnI | GATC | 4 cut(s) | 44, 62, 125, 159 |
| DpnII | GATC | 4 cut(s) | 42, 60, 123, 157 |
| FaeI | CATG | 2 cut(s) | 164, 206 |
| FaiI | YATR | 4 cut(s) | 52, 162, 204, 292 |
| FatI | CATG | 2 cut(s) | 160, 202 |
| FbaI | TGATCA | 1 cut(s) | 42 |
| FspAI | RTGCGCAY | 1 cut(s) | 230 |
| FspBI | CTAG | 2 cut(s) | 102, 210 |
| FspI | TGCGCA | 1 cut(s) | 230 |
| GlaI | GCGC | 1 cut(s) | 230 |
| GsuI | CTGGAG | 1 cut(s) | 177 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HhaI | GCGC | 1 cut(s) | 231 |
| Hin1II | CATG | 2 cut(s) | 164, 206 |
| Hin6I | GCGC | 1 cut(s) | 229 |
| HinP1I | GCGC | 1 cut(s) | 229 |
| HinfI | GANTC | 2 cut(s) | 244, 287 |
| HphI | GGTGA | 2 cut(s) | 19, 52 |
| Hpy166II | GTNNAC | 2 cut(s) | 27, 147 |
| Hpy188I | TCNGA | 1 cut(s) | 123 |
| Hpy188III | TCNNGA | 1 cut(s) | 161 |
| Hpy8I | GTNNAC | 2 cut(s) | 27, 147 |
| Hpy99I | CGWCG | 1 cut(s) | 68 |
| HpyAV | CCTTC | 3 cut(s) | 189, 198, 254 |
| HpyCH4III | ACNGT | 1 cut(s) | 13 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 276 |
| HpyCH4V | TGCA | 2 cut(s) | 36, 134 |
| HpySE526I | ACGT | 2 cut(s) | 84, 276 |
| Hsp92II | CATG | 2 cut(s) | 164, 206 |
| HspAI | GCGC | 1 cut(s) | 229 |
| Ksp22I | TGATCA | 1 cut(s) | 42 |
| Kzo9I | GATC | 4 cut(s) | 42, 60, 123, 157 |
| LmnI | GCTCC | 1 cut(s) | 113 |
| LpnPI | CCDG | 3 cut(s) | 69, 207, 267 |
| MaeI | CTAG | 2 cut(s) | 102, 210 |
| MaeII | ACGT | 2 cut(s) | 84, 276 |
| MaeIII | GTNAC | 2 cut(s) | 13, 85 |
| MalI | GATC | 4 cut(s) | 44, 62, 125, 159 |
| MboI | GATC | 4 cut(s) | 42, 60, 123, 157 |
| MluCI | AATT | 2 cut(s) | 5, 78 |
| MnlI | CCTC | 6 cut(s) | 61, 106, 129, 195, 206, 208 |
| MseI | TTAA | 1 cut(s) | 81 |
| MslI | CAYNNNNRTG | 2 cut(s) | 152, 236 |
| NdeII | GATC | 4 cut(s) | 42, 60, 123, 157 |
| NlaIII | CATG | 2 cut(s) | 164, 206 |
| NmeAIII | GCCGAG | 1 cut(s) | 77 |
| NmuCI | GTSAC | 2 cut(s) | 13, 85 |
| NsbI | TGCGCA | 1 cut(s) | 230 |
| OliI | CACNNNNGTG | 2 cut(s) | 152, 236 |
| PagI | TCATGA | 1 cut(s) | 160 |
| PaqCI | CACCTGC | 1 cut(s) | 272 |
| PfeI | GAWTC | 1 cut(s) | 244 |
| RsaI | GTAC | 1 cut(s) | 73 |
| RsaNI | GTAC | 1 cut(s) | 72 |
| RseI | CAYNNNNRTG | 2 cut(s) | 152, 236 |
| SaqAI | TTAA | 1 cut(s) | 81 |
| Sau3AI | GATC | 4 cut(s) | 42, 60, 123, 157 |
| SetI | ASST | 6 cut(s) | 42, 87, 110, 121, 279, 286 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 152, 236 |
| SmlI | CTYRAG | 1 cut(s) | 20 |
| SmoI | CTYRAG | 1 cut(s) | 20 |
| Sse9I | AATT | 2 cut(s) | 5, 78 |
| SspMI | CTAG | 2 cut(s) | 102, 210 |
| TaaI | ACNGT | 1 cut(s) | 13 |
| TaiI | ACGT | 2 cut(s) | 87, 279 |
| TaqI | TCGA | 1 cut(s) | 66 |
| TasI | AATT | 2 cut(s) | 5, 78 |
| TfiI | GAWTC | 1 cut(s) | 244 |
| Tru1I | TTAA | 1 cut(s) | 81 |
| Tru9I | TTAA | 1 cut(s) | 81 |
| TscAI | CASTG | 2 cut(s) | 18, 136 |
| TseFI | GTSAC | 2 cut(s) | 13, 85 |
| Tsp45I | GTSAC | 2 cut(s) | 13, 85 |
| TspDTI | ATGAA | 3 cut(s) | 17, 162, 177 |
| TspRI | CASTG | 2 cut(s) | 18, 136 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XspI | CTAG | 2 cut(s) | 102, 210 |