Rh7AG342500

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005545
Physical Location & Seq
Forward (+)
43275406 .. 43277053
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG342500.1

Sequence Viewer

Length: 1104 bp
ATGATTGCTATGAAGAGAAAATTCTGGGTACTGGTGCTGCTCCTGGCGTTTCATTTTTTTGCCGCTTCTTCTCAGAGCACAACCGGATGGTTGAACATAGATTGTGGGAGTGACACCCCACGCTTGGACGCCAACACCTTACTCTCATGGGACACAGACAGTGGTTTAATCAAATCAGGCATCAACAAATATGTCTCAGAAAAGCAACAACTCGACGAGATGAACACCGTTCGGTCCTTCCTTAAGGGAAAACAAAATTGTTATAAATTGAAGGTCTACAAAAAAAAGGTGCGCTACTTGATTCGTGCAGGGTTCTGTTATGGAAACTACGATGGTCTCTCTAGTCCTCCAACGTTCGACCTTCATCTGGATGGCAAGAAATGGACAACCGTCAAAACTTCAATGATAGGAGACCCAATATATCGTGAAGCCATATATGAGGCCCGATCAGATCATCTTAGCCTGTGCGTTGTTCGAGTTAAGGATGGAGGGGTGCCTTTTATTTCTTCAATAGAGGTTGTTCCATTGGAGGCTCCATTTCCTTTGTACCCTAAGATGCAAAGCAGTCACACTTTCAATCTAGAATCTAGGGTAAACTTGGGTGGGGATGAAGTAATAAGGTACACAGGAATCTTATCAGATGAAAAGTACAACCGGATATGGACTCGTGGAGTAACTCCACCAAACTGCGATGAAGTCACTACCGATTCGGATTCCTCCACAGAAAATGAGCCTCCTGATGAGGTGATCAGCGACTCCATAGAATCACAAAATCTCACTAATCCGATAACCTTGTCCGTTGATATCTCACAAACACCGACTCCAAAATCAGCTTACATTGTGCTCTATTTCGCCGAAAAGACATTCCTAGAAGCTGGAGACATCAGAATAATTCAAATCTACATCGACGACCATATGAAGTCCACAGTGACACTTGAGTTCAACAAATGCAAGGTGATCACCATATATCCTGTGATTCCTGTTGGTCCTAGGATGAGTGTGACTTTGGCCTCGGACAGTGGTTCCAACCTACCTCCGATGATCAGTGCAATGGAAGTGTTCACAACCCTAAGAAGACTCTACCGCTTACATTTCTTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

367

Amino Acids

41.41

Weight (kDa)

6.33

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 33 - 355 1.7e-63 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 493
AccI GTMKAC 1 cut(s) 276
AciI CCGC 2 cut(s) 63, 1084
AclI AACGTT 1 cut(s) 353
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 4 cut(s) 30, 548, 623, 650
AfiI CCNNNNNNNGG 2 cut(s) 124, 367
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 8 cut(s) 94, 271, 402, 510, 577, 896, 943, 1099
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 2 cut(s) 833, 875
AluI AGCT 2 cut(s) 833, 875
Alw21I GWGCWC 2 cut(s) 80, 846
Alw26I GTCTC 4 cut(s) 199, 341, 405, 873
AoxI GGCC 2 cut(s) 441, 1008
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 20
AspA2I CCTAGG 1 cut(s) 989
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 3 cut(s) 234, 442, 986
AsuHPI GGTGA 3 cut(s) 757, 952, 967
AvaII GGWCC 2 cut(s) 234, 986
AvrII CCTAGG 1 cut(s) 989
BanI GGYRCC 1 cut(s) 493
BauI CACGAG 1 cut(s) 666
BbsI GAAGAC 1 cut(s) 1081
Bbv12I GWGCWC 2 cut(s) 80, 846
BbvI GCAGC 1 cut(s) 24
BccI CCATC 4 cut(s) 81, 326, 365, 479
BciT130I CCWGG 1 cut(s) 44
BclI TGATCA 3 cut(s) 747, 957, 1041
BcoDI GTCTC 4 cut(s) 199, 341, 405, 873
BfaI CTAG 5 cut(s) 342, 581, 588, 869, 990
BfrI CTTAAG 1 cut(s) 242
BisI GCNGC 2 cut(s) 38, 63
BlnI CCTAGG 1 cut(s) 989
BlsI GCNGC 2 cut(s) 39, 64
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 2 cut(s) 234, 986
BmgT120I GGNCC 3 cut(s) 234, 442, 986
BmiI GGNNCC 3 cut(s) 495, 534, 1024
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 2 cut(s) 189, 546
BoxI GACNNNNGTC 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 1081
BpmI CTGGAG 1 cut(s) 897
BpuEI CTTGAG 1 cut(s) 956
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 341, 405
BsaJI CCNNGG 2 cut(s) 989, 1011
BsaWI WCCGGW 2 cut(s) 83, 654
BsaXI ACNNNNNCTCC 2 cut(s) 805, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 367
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 1056
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 989, 1011
BseGI GGATG 5 cut(s) 92, 376, 490, 613, 999
BseLI CCNNNNNNNGG 2 cut(s) 124, 367
BseMI GCAATG 1 cut(s) 1056
BseMII CTCAG 2 cut(s) 86, 210
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 2 cut(s) 443, 1010
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 80, 846
BsiSI CCGG 2 cut(s) 84, 655
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 124, 367
BsmAI GTCTC 4 cut(s) 199, 341, 405, 873
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 443, 1010
Bso31I GGTCTC 2 cut(s) 341, 405
Bsp1286I GDGCHC 2 cut(s) 80, 846
Bsp143I GATC 5 cut(s) 446, 451, 747, 957, 1041
BspACI CCGC 2 cut(s) 63, 1084
BspANI GGCC 2 cut(s) 443, 1010
BspCNI CTCAG 2 cut(s) 85, 209
BspLI GGNNCC 3 cut(s) 495, 534, 1024
BspT107I GGYRCC 1 cut(s) 493
BspTI CTTAAG 1 cut(s) 242
BspTNI GGTCTC 2 cut(s) 341, 405
BsrDI GCAATG 1 cut(s) 1056
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 989, 1011
BssMI GATC 5 cut(s) 446, 451, 747, 957, 1041
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 1 cut(s) 989
Bst2BI CACGAG 1 cut(s) 666
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 5 cut(s) 161, 229, 391, 928, 1019
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 242
BstDEI CTNAG 5 cut(s) 72, 196, 458, 552, 1070
BstF5I GGATG 5 cut(s) 92, 376, 490, 613, 999
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 5 cut(s) 449, 454, 750, 960, 1044
BstMAI GTCTC 4 cut(s) 199, 341, 405, 873
BstMBI GATC 5 cut(s) 446, 451, 747, 957, 1041
BstNI CCWGG 1 cut(s) 44
BstPAI GACNNNNGTC 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 1081
BsuRI GGCC 2 cut(s) 443, 1010
BtgZI GCGATG 1 cut(s) 705
BtsCI GGATG 5 cut(s) 92, 376, 490, 613, 999
BtsIMutI CAGTG 4 cut(s) 166, 933, 1024, 1051
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 3 cut(s) 234, 442, 986
CseI GACGC 1 cut(s) 137
Csp6I GTAC 4 cut(s) 29, 547, 622, 649
CviAII CATG 1 cut(s) 147
CviJI RGCY 8 cut(s) 431, 443, 462, 533, 733, 833, 875, 1010
CviKI_1 RGCY 8 cut(s) 431, 443, 462, 533, 733, 833, 875, 1010
CviQI GTAC 4 cut(s) 29, 547, 622, 649
DdeI CTNAG 5 cut(s) 72, 196, 458, 552, 1070
DpnI GATC 5 cut(s) 448, 453, 749, 959, 1043
DpnII GATC 5 cut(s) 446, 451, 747, 957, 1041
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 989
Eco31I GGTCTC 2 cut(s) 341, 405
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 2 cut(s) 234, 986
EcoRII CCWGG 1 cut(s) 42
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 1 cut(s) 989
ErhI CCWWGG 1 cut(s) 989
FaeI CATG 1 cut(s) 150
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 146
FauNDI CATATG 1 cut(s) 915
FbaI TGATCA 3 cut(s) 747, 957, 1041
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 38, 63
FokI GGATG 5 cut(s) 99, 383, 497, 620, 1006
Fsp4HI GCNGC 2 cut(s) 38, 63
FspBI CTAG 5 cut(s) 342, 581, 588, 869, 990
GlaI GCGC 1 cut(s) 293
GluI GCNGC 2 cut(s) 38, 63
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 2 cut(s) 443, 1010
HapII CCGG 2 cut(s) 84, 655
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 150
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HpaII CCGG 2 cut(s) 84, 655
HphI GGTGA 3 cut(s) 757, 952, 967
Hpy166II GTNNAC 5 cut(s) 277, 595, 624, 924, 1062
Hpy188I TCNGA 9 cut(s) 75, 199, 451, 640, 712, 786, 887, 1015, 1038
Hpy188III TCNNGA 5 cut(s) 368, 425, 581, 737, 1096
Hpy8I GTNNAC 5 cut(s) 277, 595, 624, 924, 1062
Hpy99I CGWCG 2 cut(s) 218, 911
HpyAV CCTTC 3 cut(s) 247, 265, 371
HpyCH4III ACNGT 5 cut(s) 161, 229, 391, 928, 1019
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 308, 559, 951, 1049
HpyF3I CTNAG 5 cut(s) 72, 196, 458, 552, 1070
HpySE526I ACGT 1 cut(s) 353
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 150
HspAI GCGC 1 cut(s) 292
Ksp22I TGATCA 3 cut(s) 747, 957, 1041
Kzo9I GATC 5 cut(s) 446, 451, 747, 957, 1041
LmnI GCTCC 2 cut(s) 45, 538
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 189, 546
MaeI CTAG 5 cut(s) 342, 581, 588, 869, 990
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 6 cut(s) 110, 566, 673, 697, 928, 1000
MalI GATC 5 cut(s) 448, 453, 749, 959, 1043
MboI GATC 5 cut(s) 446, 451, 747, 957, 1041
MboII GAAGA 4 cut(s) 25, 60, 498, 1086
MhlI GDGCHC 2 cut(s) 80, 846
MluCI AATT 4 cut(s) 20, 256, 266, 891
MlyI GAGTC 4 cut(s) 658, 749, 814, 1071
MmeI TCCRAC 2 cut(s) 374, 1050
MseI TTAA 3 cut(s) 167, 243, 480
MslI CAYNNNNRTG 1 cut(s) 369
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 2 cut(s) 84, 655
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NdeI CATATG 1 cut(s) 915
NdeII GATC 5 cut(s) 446, 451, 747, 957, 1041
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 3 cut(s) 495, 534, 1024
NmuCI GTSAC 5 cut(s) 110, 566, 697, 928, 1000
PfeI GAWTC 7 cut(s) 301, 584, 630, 707, 713, 764, 976
PkrI GCNGC 2 cut(s) 39, 64
PleI GAGTC 4 cut(s) 658, 749, 814, 1071
PpsI GAGTC 4 cut(s) 658, 749, 814, 1071
PshAI GACNNNNGTC 1 cut(s) 389
PsiI TTATAA 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 3 cut(s) 495, 534, 1024
PspPI GGNCC 3 cut(s) 234, 442, 986
RsaI GTAC 4 cut(s) 30, 548, 623, 650
RsaNI GTAC 4 cut(s) 29, 547, 622, 649
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 3 cut(s) 167, 243, 480
SatI GCNGC 2 cut(s) 38, 63
Sau3AI GATC 5 cut(s) 446, 451, 747, 957, 1041
Sau96I GGNCC 3 cut(s) 234, 442, 986
SchI GAGTC 4 cut(s) 658, 749, 814, 1071
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 2 cut(s) 80, 846
SfaNI GCATC 2 cut(s) 189, 546
SinI GGWCC 2 cut(s) 234, 986
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 242, 935
SmoI CTYRAG 2 cut(s) 242, 935
Sse9I AATT 4 cut(s) 20, 256, 266, 891
SsiI CCGC 2 cut(s) 63, 1084
SspMI CTAG 5 cut(s) 342, 581, 588, 869, 990
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 989
TaaI ACNGT 5 cut(s) 161, 229, 391, 928, 1019
TaiI ACGT 1 cut(s) 356
TaqI TCGA 4 cut(s) 213, 357, 475, 906
TaqII GACCGA 1 cut(s) 222
TasI AATT 4 cut(s) 20, 256, 266, 891
TatI WGTACW 1 cut(s) 648
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 7 cut(s) 301, 584, 630, 707, 713, 764, 976
Tru1I TTAA 3 cut(s) 167, 243, 480
Tru9I TTAA 3 cut(s) 167, 243, 480
TscAI CASTG 4 cut(s) 166, 933, 1024, 1051
TseFI GTSAC 5 cut(s) 110, 566, 697, 928, 1000
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 5 cut(s) 110, 566, 697, 928, 1000
TspDTI ATGAA 8 cut(s) 26, 41, 236, 353, 624, 657, 708, 932
TspGWI ACGGA 1 cut(s) 787
TspRI CASTG 4 cut(s) 166, 933, 1024, 1051
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 234, 986
XapI RAATTY 1 cut(s) 20
XbaI TCTAGA 1 cut(s) 580
XmaJI CCTAGG 1 cut(s) 989
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 5 cut(s) 342, 581, 588, 869, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.