FvH4_7g30120

Ferric reduction oxidase 4-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
22022802 .. 22026596
3795 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30120.t2

Sequence Viewer

Length: 1536 bp
ATGTTTGGGTTAACGTCGGAGTCGAGTATCAAGTACCATATTTGGCTTGGCCATCTCTCCATGGTTCTATTTGCTGCTCATTCCCTAGGCTACATCATCTTCTGGGGCATCACTCATCAAATGGCTCAGATGCTGGAATGGAGCAACAGTCATGTATCAAACGTAGCTGGGGAGATTGCAATTATATGTGCAATGGCAATGTGGGTGACTAGCATTCCTCGTGCTAGACAAAAAATGTTTGAACTATTTTTCTACACCCATCAGCTCTATGTTCTCTACATCGTCTTCTACATACTGCATGCCGGCGTTTCCTTCTTCTGTACGATCCTTCCCGGAATCTTTCTCTTCATCATTGATCGATACCTGAGATTTTTACAGTCTTATCAACGGGCTGAGTTAGTCTCTGCACGCATTTTACCTTGTGAGACCATTGAACTCAACTTCTCCAAGAGCCAAGGCCTGGATTATAATCCCACAAGCATCTTGTTTATCAATGTGCCTAGTGTATCCAAGATGCAATGGCACCCATTTACAGTGACTTCAAACTCTCACATGGAGGCAGATAAGCTAAGTGTTGTGATTAAGAGTCTAGGAAGCTGGTCTCAGAAACTTTACCAGCAACTTTCTTCTAACTCGGTGGATCATATTCAAGTCTCTGTTGAAGGACCTTATGGACCTACGTCATTGCATTTTCTAAGGCACAAGGCTCTGGTGATGATCAGTGGAGGCAGTGGAATCACTCCGATAATCTCCATAATCCGAGAAATCATTTTCCAAAGCACCAAACCAGACTCCCATGTTCCGCCTGTTCGGTTGATATGTGCCTTCAAGAACTCAGCTGATCTCGCCATGCTACAACTCTTGCTTCCAATTTCTGTCACACCTTTTAATTTTACCAAGCTGCAGTTACAAATTGAAGCTTATGTGACGAGGGAGACACAGCAGCAGCCTCCATCAGACCCCCACAAGCTTCTCCAAACCCTATGGTTCAAGCCAGACCCCTTGGACTCGCCCATTACTTTGGTTCTAGGACAAAACACTTGGCTATGGCTTGGTGCTATAATCTCATCCTCATTTTTCTTATTTCTCTTTGTTTTGGGCATTGTCAATCATTTCTATATATATCCAATTGACCACAACACTGGTGAACACTACCATGTCTCTTTCATTTGCCTGTGGTACATGTTTTTGGTCTGTGCCTCCATTTTCATAGTCTCTAGTGCAATCTTCATTTGGTGCAAGAAACAAAATGCCATTGAAGAAGGGAAGCGAAATCAGAATGCGAAATTATCAACACCAGCAACTGATATTGAACTTCAGAGTTCTCCCCATAATCATGAGTCCCTGATTGCTCAAGCTACGCAAGTGCAATATGGAACTAGGCCTGACCTGAAGAAAATTCTGTTGGAGACAAAAGGATCTGATATTGGAGTGTTGGTTTGTGGCCCAAGGAAGATGAGACATGAAGTTGCCACAGTTTGTTCATCCAGTTTGGCACATAATCTGCAGTTTGAGTCCATTAGCTTTAACTGGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

512

Amino Acids

58.03

Weight (kDa)

8.03

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferric_reduct PF01794 169 - 288 9.3e-18 Ferric reductase like transmembrane component
FAD_binding_8 PF08022 323 - 420 6.9e-25 FAD-binding domain
NAD_binding_6 PF08030 427 - 686 2.2e-19 Ferric reductase NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 522
AccB7I CCANNNNNTGG 1 cut(s) 460
AciI CCGC 1 cut(s) 803
AclWI GGATC 3 cut(s) 319, 648, 1426
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 1398
AcuI CTGAAG 2 cut(s) 1301, 1412
AfaI GTAC 3 cut(s) 35, 322, 1181
AfiI CCNNNNNNNGG 1 cut(s) 460
AflIII ACRYGT 1 cut(s) 1182
AjnI CCWGG 1 cut(s) 459
AjuI GAANNNNNNNTTGG 2 cut(s) 1388, 1420
Alw26I GTCTC 9 cut(s) 406, 419, 606, 658, 929, 1165, 1219, 1403, 1453
AlwI GGATC 3 cut(s) 319, 648, 1426
AlwNI CAGNNNCTG 2 cut(s) 133, 1304
AoxI GGCC 4 cut(s) 49, 457, 1382, 1444
ApeKI GCWGC 4 cut(s) 74, 901, 943, 946
ApoI RAATTY 1 cut(s) 1398
AspA2I CCTAGG 1 cut(s) 85
AspS9I GGNCC 3 cut(s) 665, 674, 1445
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 3 cut(s) 217, 724, 1157
AvaII GGWCC 2 cut(s) 665, 674
AvrII CCTAGG 1 cut(s) 85
BalI TGGCCA 1 cut(s) 51
BanI GGYRCC 1 cut(s) 522
BauI CACGAG 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 277
BbvI GCAGC 4 cut(s) 61, 888, 955, 958
BccI CCATC 3 cut(s) 60, 267, 961
BciT130I CCWGG 1 cut(s) 461
BciVI GTATCC 1 cut(s) 517
BclI TGATCA 1 cut(s) 717
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 9 cut(s) 406, 419, 606, 658, 929, 1165, 1219, 1403, 1453
BfaI CTAG 8 cut(s) 86, 210, 225, 501, 590, 1028, 1218, 1380
BfmI CTRYAG 2 cut(s) 902, 1505
BfuI GTATCC 1 cut(s) 517
BisI GCNGC 4 cut(s) 75, 902, 944, 947
BlnI CCTAGG 1 cut(s) 85
BlsI GCNGC 4 cut(s) 76, 903, 945, 948
Bme1390I CCNGG 2 cut(s) 333, 461
Bme18I GGWCC 2 cut(s) 665, 674
BmgT120I GGNCC 3 cut(s) 665, 674, 1445
BmiI GGNNCC 1 cut(s) 524
BmrFI CCNGG 2 cut(s) 333, 461
BmsI GCATC 4 cut(s) 117, 120, 489, 504
BoxI GACNNNNGTC 1 cut(s) 679
BpiI GAAGAC 1 cut(s) 277
BplI GAGNNNNNCTC 2 cut(s) 386, 418
BpuEI CTTGAG 1 cut(s) 1338
BpuMI CCSGG 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 358
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 2 cut(s) 419, 606
BsaJI CCNNGG 5 cut(s) 60, 85, 454, 1002, 1448
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 1422, 1452
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 3 cut(s) 1147, 1488, 1535
Bse3DI GCAATG 4 cut(s) 198, 204, 524, 683
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 1 cut(s) 461
BseCI ATCGAT 1 cut(s) 358
BseDI CCNNGG 5 cut(s) 60, 85, 454, 1002, 1448
BseGI GGATG 2 cut(s) 1067, 1484
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 4 cut(s) 198, 204, 524, 683
BseMII CTCAG 5 cut(s) 140, 356, 384, 617, 849
BseNI ACTGG 3 cut(s) 1147, 1488, 1535
BseXI GCAGC 4 cut(s) 61, 888, 955, 958
BseYI CCCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 4 cut(s) 51, 459, 1384, 1446
BshNI GGYRCC 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 358
BsiSI CCGG 2 cut(s) 303, 333
BslFI GGGAC 1 cut(s) 1327
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 9 cut(s) 406, 419, 606, 658, 929, 1165, 1219, 1403, 1453
BsmFI GGGAC 1 cut(s) 1327
BsmI GAATGC 2 cut(s) 213, 1285
BsnI GGCC 4 cut(s) 51, 459, 1384, 1446
Bso31I GGTCTC 2 cut(s) 419, 606
Bsp143I GATC 6 cut(s) 324, 355, 640, 717, 841, 1418
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 1 cut(s) 803
BspANI GGCC 4 cut(s) 51, 459, 1384, 1446
BspCNI CTCAG 5 cut(s) 139, 357, 385, 616, 848
BspDI ATCGAT 1 cut(s) 358
BspHI TCATGA 1 cut(s) 1336
BspLI GGNNCC 1 cut(s) 524
BspMAI CTGCAG 2 cut(s) 906, 1509
BspPI GGATC 3 cut(s) 319, 648, 1426
BspT107I GGYRCC 1 cut(s) 522
BspTNI GGTCTC 2 cut(s) 419, 606
BsrDI GCAATG 4 cut(s) 198, 204, 524, 683
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 3 cut(s) 1147, 1488, 1535
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 5 cut(s) 60, 85, 454, 1002, 1448
BssMI GATC 6 cut(s) 324, 355, 640, 717, 841, 1418
BssSI CACGAG 1 cut(s) 219
BssT1I CCWWGG 5 cut(s) 60, 85, 454, 1002, 1448
Bst2BI CACGAG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 4 cut(s) 149, 378, 535, 1477
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 300, 304, 409
BstDEI CTNAG 7 cut(s) 126, 365, 393, 569, 603, 695, 835
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 1067, 1484
BstKTI GATC 6 cut(s) 327, 358, 643, 720, 844, 1421
BstMAI GTCTC 9 cut(s) 406, 419, 606, 658, 929, 1165, 1219, 1403, 1453
BstMBI GATC 6 cut(s) 324, 355, 640, 717, 841, 1418
BstMWI GCNNNNNNNGC 1 cut(s) 845
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 2 cut(s) 302, 1186
BstPAI GACNNNNGTC 1 cut(s) 679
BstSCI CCNGG 2 cut(s) 331, 459
BstSFI CTRYAG 2 cut(s) 902, 1505
BstV1I GCAGC 4 cut(s) 61, 888, 955, 958
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 1418
BstXI CCANNNNNNTGG 2 cut(s) 1021, 1142
BstYI RGATCY 1 cut(s) 1418
Bsu15I ATCGAT 1 cut(s) 358
BsuI GTATCC 1 cut(s) 517
BsuRI GGCC 4 cut(s) 51, 459, 1384, 1446
BsuTUI ATCGAT 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 1067, 1484
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 4 cut(s) 540, 727, 736, 1140
Cac8I GCNNGC 3 cut(s) 300, 304, 409
CaiI CAGNNNCTG 2 cut(s) 133, 1304
CciI TCATGA 1 cut(s) 1336
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 665, 674, 1445
ClaI ATCGAT 1 cut(s) 358
Csp6I GTAC 3 cut(s) 34, 321, 1180
CviQI GTAC 3 cut(s) 34, 321, 1180
DdeI CTNAG 7 cut(s) 126, 365, 393, 569, 603, 695, 835
DpnI GATC 6 cut(s) 326, 357, 642, 719, 843, 1420
DpnII GATC 6 cut(s) 324, 355, 640, 717, 841, 1418
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
EciI GGCGGA 1 cut(s) 792
Eco130I CCWWGG 5 cut(s) 60, 85, 454, 1002, 1448
Eco147I AGGCCT 2 cut(s) 459, 1384
Eco31I GGTCTC 2 cut(s) 419, 606
Eco47I GGWCC 2 cut(s) 665, 674
Eco57I CTGAAG 2 cut(s) 1301, 1412
EcoO109I RGGNCCY 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 5 cut(s) 60, 85, 454, 1002, 1448
ErhI CCWWGG 5 cut(s) 60, 85, 454, 1002, 1448
FaqI GGGAC 1 cut(s) 1327
FbaI TGATCA 1 cut(s) 717
Fnu4HI GCNGC 4 cut(s) 75, 902, 944, 947
FokI GGATG 2 cut(s) 1054, 1471
Fsp4HI GCNGC 4 cut(s) 75, 902, 944, 947
FspBI CTAG 8 cut(s) 86, 210, 225, 501, 590, 1028, 1218, 1380
GluI GCNGC 4 cut(s) 75, 902, 944, 947
GsaI CCCAGC 1 cut(s) 171
HaeIII GGCC 4 cut(s) 51, 459, 1384, 1446
HapII CCGG 2 cut(s) 303, 333
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 918, 968
HinfI GANTC 8 cut(s) 20, 336, 586, 735, 791, 1007, 1340, 1514
HpaI GTTAAC 1 cut(s) 12
HpaII CCGG 2 cut(s) 303, 333
HphI GGTGA 3 cut(s) 217, 724, 1157
Hpy166II GTNNAC 2 cut(s) 12, 1148
Hpy188I TCNGA 9 cut(s) 19, 129, 606, 744, 761, 958, 1278, 1320, 1423
Hpy188III TCNNGA 2 cut(s) 829, 1337
Hpy8I GTNNAC 2 cut(s) 12, 1148
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 5 cut(s) 322, 338, 656, 835, 1256
HpyCH4III ACNGT 4 cut(s) 149, 378, 535, 1477
HpyCH4IV ACGT 3 cut(s) 14, 162, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 845
HpyF3I CTNAG 7 cut(s) 126, 365, 393, 569, 603, 695, 835
HpySE526I ACGT 3 cut(s) 14, 162, 680
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 717
KspAI GTTAAC 1 cut(s) 12
Kzo9I GATC 6 cut(s) 324, 355, 640, 717, 841, 1418
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 4 cut(s) 61, 888, 955, 958
LweI GCATC 4 cut(s) 117, 120, 489, 504
MaeI CTAG 8 cut(s) 86, 210, 225, 501, 590, 1028, 1218, 1380
MaeII ACGT 3 cut(s) 14, 162, 680
MaeIII GTNAC 5 cut(s) 205, 535, 877, 906, 925
MalI GATC 6 cut(s) 326, 357, 642, 719, 843, 1420
MboI GATC 6 cut(s) 324, 355, 640, 717, 841, 1418
MboII GAAGA 9 cut(s) 91, 277, 307, 337, 618, 1219, 1271, 1405, 1465
MfeI CAATTG 1 cut(s) 1128
MflI RGATCY 1 cut(s) 1418
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 7 cut(s) 180, 870, 889, 912, 1128, 1286, 1398
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 6 cut(s) 29, 595, 785, 1001, 1349, 1523
MmeI TCCRAC 1 cut(s) 1386
MnlI CCTC 7 cut(s) 228, 550, 719, 924, 960, 1081, 1210
Mox20I TGGCCA 1 cut(s) 51
MroNI GCCGGC 1 cut(s) 302
MscI TGGCCA 1 cut(s) 51
MseI TTAA 4 cut(s) 11, 582, 888, 1527
MslI CAYNNNNRTG 2 cut(s) 1155, 1335
Msp20I TGGCCA 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 839
MspI CCGG 2 cut(s) 303, 333
MspR9I CCNGG 2 cut(s) 333, 461
MunI CAATTG 1 cut(s) 1128
Mva1269I GAATGC 2 cut(s) 213, 1285
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 845
NaeI GCCGGC 1 cut(s) 304
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 60
NdeII GATC 6 cut(s) 324, 355, 640, 717, 841, 1418
NgoMIV GCCGGC 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 524
NmuCI GTSAC 4 cut(s) 205, 535, 877, 925
NspI RCATGY 2 cut(s) 302, 1186
PaeI GCATGC 1 cut(s) 302
PagI TCATGA 1 cut(s) 1336
PceI AGGCCT 2 cut(s) 459, 1384
PciI ACATGT 1 cut(s) 1182
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 2 cut(s) 213, 1285
PdiI GCCGGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 336, 735
PflMI CCANNNNNTGG 1 cut(s) 460
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 4 cut(s) 76, 903, 945, 948
PleI GAGTC 6 cut(s) 28, 594, 785, 1001, 1348, 1522
PpsI GAGTC 6 cut(s) 28, 594, 785, 1001, 1348, 1522
PpuMI RGGWCCY 1 cut(s) 665
PscI ACATGT 1 cut(s) 1182
PshAI GACNNNNGTC 1 cut(s) 679
PsiI TTATAA 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 459
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 524
PspPI GGNCC 3 cut(s) 665, 674, 1445
PspPPI RGGWCCY 1 cut(s) 665
PstI CTGCAG 2 cut(s) 906, 1509
PstNI CAGNNNCTG 2 cut(s) 133, 1304
PsuI RGATCY 1 cut(s) 1418
PvuII CAGCTG 1 cut(s) 839
RsaI GTAC 3 cut(s) 35, 322, 1181
RsaNI GTAC 3 cut(s) 34, 321, 1180
RseI CAYNNNNRTG 2 cut(s) 1155, 1335
SaqAI TTAA 4 cut(s) 11, 582, 888, 1527
SatI GCNGC 4 cut(s) 75, 902, 944, 947
Sau3AI GATC 6 cut(s) 324, 355, 640, 717, 841, 1418
Sau96I GGNCC 3 cut(s) 665, 674, 1445
SchI GAGTC 6 cut(s) 29, 595, 785, 1001, 1349, 1523
ScrFI CCNGG 2 cut(s) 333, 461
SfaNI GCATC 4 cut(s) 117, 120, 489, 504
SfcI CTRYAG 2 cut(s) 902, 1505
SinI GGWCC 2 cut(s) 665, 674
SmiMI CAYNNNNRTG 2 cut(s) 1155, 1335
SmlI CTYRAG 1 cut(s) 1353
SmoI CTYRAG 1 cut(s) 1353
SphI GCATGC 1 cut(s) 302
Sse9I AATT 7 cut(s) 180, 870, 889, 912, 1128, 1286, 1398
SseBI AGGCCT 2 cut(s) 459, 1384
SsiI CCGC 1 cut(s) 803
SspMI CTAG 8 cut(s) 86, 210, 225, 501, 590, 1028, 1218, 1380
StuI AGGCCT 2 cut(s) 459, 1384
StyD4I CCNGG 2 cut(s) 331, 459
StyI CCWWGG 5 cut(s) 60, 85, 454, 1002, 1448
TaaI ACNGT 4 cut(s) 149, 378, 535, 1477
TaiI ACGT 3 cut(s) 17, 165, 683
TaqI TCGA 2 cut(s) 23, 358
TasI AATT 7 cut(s) 180, 870, 889, 912, 1128, 1286, 1398
TfiI GAWTC 2 cut(s) 336, 735
Tru1I TTAA 4 cut(s) 11, 582, 888, 1527
Tru9I TTAA 4 cut(s) 11, 582, 888, 1527
TscAI CASTG 4 cut(s) 540, 727, 736, 1147
TseFI GTSAC 4 cut(s) 205, 535, 877, 925
TseI GCWGC 4 cut(s) 74, 901, 943, 946
Tsp45I GTSAC 4 cut(s) 205, 535, 877, 925
TspDTI ATGAA 6 cut(s) 337, 1156, 1198, 1219, 1473, 1479
TspRI CASTG 4 cut(s) 540, 727, 736, 1147
Van91I CCANNNNNTGG 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 665, 674
XapI RAATTY 1 cut(s) 1398
XceI RCATGY 2 cut(s) 302, 1186
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XmaJI CCTAGG 1 cut(s) 85
XspI CTAG 8 cut(s) 86, 210, 225, 501, 590, 1028, 1218, 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.