Rorug01G0406700

Ferric reduction oxidase 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001860
Physical Location & Seq
Reverse (-)
51334805 .. 51336230
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0406700.1

Sequence Viewer

Length: 696 bp
ATGATCACAAGCTTGGCAACCTCCACAACCTACCACCTAGGCCAAGACTGGAGGACCTTGGGTGCAGTAGGTGCAGAAGTAGTGTTGGTGGATGAAATCCCTTTTCCTTCAGTGATCACAACCTCCAAGCCATTAGCTCTGCTGGGTCATGGGATCACAGACATTGAGATACACTTTCTGCAAATCAAGTTCACAGCAATTGGGGTTTACTTGGACCCTGAGATTGTGGGACATCTGCAGAAATGGAAGACCAAGAAAGGAACTGAGCTTGCAGAAGATGATGACTTCTTTGATGCTCTTATTTCTGCTCCTGTTGAGAAATTTCTAAGAGTTGTGGTGATCAAGGAGATCAAAGGGTCTCAATATGGGGTGCAGCTTGAGAGTTCAGTGAGGGATAGGTTGGCAGCTGATGACAAATATGAGGAAGAGGAGGAGGAAGCCTTGGAGAAGATTGTTGAGTTCTTCCAATCAAAATATTTTAAGAAGGATTCCATCATCACATTTCATTTTCCAGCTACTTCCCCTACAGCTGAGATTGTGTTTACTGCTGAAGGGAAGGAGGATTCGAAGATCAAAGTGGAAAATGCCAATGTTGTCGAGACGATCCAGAAATGGTATTTGGGTGGAACAAGAGGGGTTTCTCCTTCAACCATATCTTCCTTGGCTAACACACTCTCTGCTGAATTGACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

231

Amino Acids

25.64

Weight (kDa)

4.92

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chalcone PF02431 30 - 227 2.5e-33 Chalcone-flavanone isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 161, 598
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 2 cut(s) 93, 570
AgsI TTSAA 1 cut(s) 648
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AluBI AGCT 7 cut(s) 12, 137, 268, 376, 407, 515, 530
AluI AGCT 7 cut(s) 12, 137, 268, 376, 407, 515, 530
Alw26I GTCTC 2 cut(s) 363, 593
AlwI GGATC 2 cut(s) 161, 598
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 373, 404
ApoI RAATTY 1 cut(s) 320
AspA2I CCTAGG 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 54, 214
AsuHPI GGTGA 1 cut(s) 349
AsuII TTCGAA 1 cut(s) 566
AvaII GGWCC 2 cut(s) 54, 214
AvrII CCTAGG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 385, 416
BccI CCATC 1 cut(s) 500
BclI TGATCA 3 cut(s) 3, 114, 339
BcoDI GTCTC 2 cut(s) 363, 593
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 2 cut(s) 236, 525
BisI GCNGC 2 cut(s) 374, 405
BlnI CCTAGG 1 cut(s) 37
BlsI GCNGC 2 cut(s) 375, 406
Bme18I GGWCC 2 cut(s) 54, 214
BmgT120I GGNCC 2 cut(s) 54, 214
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 4 cut(s) 37, 57, 441, 660
Bse1I ACTGG 1 cut(s) 53
BseDI CCNNGG 4 cut(s) 37, 57, 441, 660
BseGI GGATG 1 cut(s) 97
BseMII CTCAG 3 cut(s) 210, 255, 522
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 2 cut(s) 443, 446
BseXI GCAGC 2 cut(s) 385, 416
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 3 cut(s) 84, 93, 392
BshFI GGCC 1 cut(s) 42
BslFI GGGAC 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 363, 593
BsmBI CGTCTC 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 566
Bsp143I GATC 7 cut(s) 3, 114, 153, 339, 348, 570, 603
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 3 cut(s) 211, 256, 523
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 240
BspPI GGATC 2 cut(s) 161, 598
BspT104I TTCGAA 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 363
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 4 cut(s) 37, 57, 441, 660
BssMI GATC 7 cut(s) 3, 114, 153, 339, 348, 570, 603
BssT1I CCWWGG 4 cut(s) 37, 57, 441, 660
Bst6I CTCTTC 1 cut(s) 420
BstAPI GCANNNNNTGC 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 4 cut(s) 219, 264, 326, 531
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 7 cut(s) 6, 117, 156, 342, 351, 573, 606
BstMAI GTCTC 2 cut(s) 363, 593
BstMBI GATC 7 cut(s) 3, 114, 153, 339, 348, 570, 603
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSFI CTRYAG 2 cut(s) 236, 525
BstV1I GCAGC 2 cut(s) 385, 416
BstV2I GAAGAC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 117, 393
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 54, 214
CviAII CATG 1 cut(s) 149
DdeI CTNAG 4 cut(s) 219, 264, 326, 531
DpnI GATC 7 cut(s) 5, 116, 155, 341, 350, 572, 605
DpnII GATC 7 cut(s) 3, 114, 153, 339, 348, 570, 603
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
Eco130I CCWWGG 4 cut(s) 37, 57, 441, 660
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 54, 214
Eco57I CTGAAG 2 cut(s) 93, 570
EcoO109I RGGNCCY 1 cut(s) 54
EcoT14I CCWWGG 4 cut(s) 37, 57, 441, 660
ErhI CCWWGG 4 cut(s) 37, 57, 441, 660
Esp3I CGTCTC 1 cut(s) 593
FaeI CATG 1 cut(s) 152
FaiI YATR 4 cut(s) 150, 366, 420, 653
FaqI GGGAC 1 cut(s) 243
FatI CATG 1 cut(s) 148
FbaI TGATCA 3 cut(s) 3, 114, 339
Fnu4HI GCNGC 2 cut(s) 374, 405
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 2 cut(s) 374, 405
FspBI CTAG 1 cut(s) 38
GluI GCNGC 2 cut(s) 374, 405
GsaI CCCAGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 488, 563
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 3 cut(s) 192, 208, 543
Hpy188III TCNNGA 2 cut(s) 598, 607
Hpy8I GTNNAC 3 cut(s) 192, 208, 543
HpyAV CCTTC 5 cut(s) 117, 478, 545, 550, 654
HpyCH4V TGCA 6 cut(s) 65, 74, 181, 238, 272, 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 4 cut(s) 219, 264, 326, 531
Hsp92II CATG 1 cut(s) 152
Ksp22I TGATCA 3 cut(s) 3, 114, 339
Kzo9I GATC 7 cut(s) 3, 114, 153, 339, 348, 570, 603
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 6 cut(s) 34, 128, 231, 324, 525, 620
Lsp1109I GCAGC 2 cut(s) 385, 416
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 38
MalI GATC 7 cut(s) 5, 116, 155, 341, 350, 572, 605
MboI GATC 7 cut(s) 3, 114, 153, 339, 348, 570, 603
MboII GAAGA 7 cut(s) 259, 287, 437, 454, 460, 580, 648
MfeI CAATTG 1 cut(s) 198
MluCI AATT 3 cut(s) 198, 320, 683
MseI TTAA 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 407, 530
MunI CAATTG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 7 cut(s) 3, 114, 153, 339, 348, 570, 603
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 216
NspV TTCGAA 1 cut(s) 566
PfeI GAWTC 2 cut(s) 488, 563
PkrI GCNGC 2 cut(s) 375, 406
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
PspFI CCCAGC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 54, 214
PspPPI RGGWCCY 1 cut(s) 54
PstI CTGCAG 1 cut(s) 240
PvuII CAGCTG 2 cut(s) 407, 530
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 2 cut(s) 374, 405
Sau3AI GATC 7 cut(s) 3, 114, 153, 339, 348, 570, 603
Sau96I GGNCC 2 cut(s) 54, 214
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 2 cut(s) 236, 525
SfuI TTCGAA 1 cut(s) 566
SinI GGWCC 2 cut(s) 54, 214
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 3 cut(s) 198, 320, 683
SspI AATATT 1 cut(s) 476
SspMI CTAG 1 cut(s) 38
StyI CCWWGG 4 cut(s) 37, 57, 441, 660
TaqI TCGA 2 cut(s) 566, 597
TasI AATT 3 cut(s) 198, 320, 683
TfiI GAWTC 2 cut(s) 488, 563
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 2 cut(s) 117, 393
TseI GCWGC 2 cut(s) 373, 404
TspDTI ATGAA 2 cut(s) 108, 494
TspRI CASTG 2 cut(s) 117, 393
VpaK11BI GGWCC 2 cut(s) 54, 214
XapI RAATTY 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XmaJI CCTAGG 1 cut(s) 37
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.