Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001860

Physical Location & Seq

Genomic Coordinates Reverse (-)

64735762 .. 64738179

Gene Structure 2418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGTGATGATGCAGATGCTAGAATGGAGCTCAACTCGGGTATCAAACGTAGCAGGGGAGATTGCAATAGTGTTTGCAATTGCAATCTCTACGTTCTCTACATCGTCTTCTACGTACTGCACACCGGTGCTTAATTATTTCTTCTGTACGATCCTTCCTGGGATCTTCCTCTTCATCATAGATCGGTACCTGAGATTTTTACAATCTTATCAACGTGCCAAGTTAGTCTCCGCACGCATTTCACCTTGTGAGACCATTGAACTCAACTTCTCCAAGAGCCGAGGCCTAGATTATAATCCCACTAGCATCTTGTTTATCAATGTCCCTAGTGTATCCAAGATGCAATGGCACCCATTTACAGTGACTTCAAACTCTAACATGGAGGCAGATAAGCTAAGTGTTGTGATTAAGAGTCTAGGAAGTTGGTCTCAGAAACTTTACCAGCAACTTTCTTCTAATTCTGTGGATCATATTCAAGTTTCTGTTGAAGGGCCTTATGGACCTCGTTCATCTCATTTTCTAAGGCACAAGGCTCTGGTGATGATTAGTGGAGGCAGTGGAATTACACCGATGATCTCCATAATCCGAGAAATCATTTTCCAAAGCACCAAACCAGACTGCCATGTTCCGCCTGTTCGGTTGATATGTGCCTTCAAGAACTCAGCTGATCTCACCATGCTACAACTCTTGCTTCCAATTTCTGTCACACCTTCTAATTTTACCCAGCTGCAGTTTCAAATTGAAGCATATGTGACCAGGGAGACACACAAGCAGCCTCCACCAGAACCCCACAAGTCTCTCCAAACCTTATGGTTTAAGCCAAACCAACTGAACTCACCCATTTCTTTGGTTCTAGGACAAAACACTTGGCTATGGCTTGGTGCTATAATCTCATCCTCATTTGTCTTATTTCTCTTTGTTTTGGGCATTGTCAATCGTTTCTATATATACCCAATCGACCACAACACTGTCTTCATTTGGTGCAAGAGACAGAACGCCATCGAAGAAGGGAAGCGAACTCAGAATGCGAGATCAACACCAACAACTGATATCGAACTTGCGAGTTCTCCCCATAATCATGAGTCCCTGATCGCTCAAGCTACCCAAGTGCATTATGGAACTAGGCCTGACCTGAAGAAAATTCTGTTATTGGAAACCAAAGGATCTGATATTGGAGTGTTGGTTAGTGGCCCAAGGAAGTTGAGACATGAGGTTGCCACAGTCTGTTCATCCAGTTTGGCACATAATCTGCACTTTGAGTCCATTAGCTTTAACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

426

Amino Acids

47.98

Weight (kDa)

9.18

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_8	PF08022	73 - 169	1.7e-24	FAD-binding domain
NAD_binding_6	PF08030	177 - 409	8.1e-19	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23980 AT5G23990 AT5G23990 AT5G23990
fragaria_vesca	FvH4_7g30120 FvH4_7g30120 FvH4_7g30141
malus_domestica	MD01G1207200.v1.1 MD07G1278100.v1.1
prunus_persica	Prupe.2G299900_v2.0.a1
pyrus_communis	pycom07g25310
rosa_chinensis	RchiOBHm_Chr1g0378121 RchiOBHm_Chr1g0378131 RchiOBHm_Chr1g0378151 RchiOBHm_Chr1g0378171
rosa_laevigata	RLG00000026465 RLG00000026467 RLG00000026469 RLG00000026470
rosa_multiflora	Rmu_sc0000625.1_g000007 Rmu_sc0000625.1_g000009 Rmu_sc0001465.1_g000007 Rmu_sc0001465.1_g000010
rosa_roxburghii	Rroxscaffold_156G00440270 Rroxscaffold_4G00280700 Rroxscaffold_4G00280710 Rroxscaffold_4G00280730 Rroxscaffold_4G00280760
rosa_rugosa	Rorug01G0406500 Rorug01G0406700
rosa_samantha	Rh1AG423000 Rh1AG423100 Rh1AG423300 Rh1BG385300 Rh1BG385500 Rh1BG385800 Rh1CG399300 Rh1CG399500 Rh1CG399600 Rh1DG416500 Rh1DG416700 Rh1DG416900
rosa_wichuraiana	Rw1G037390 Rw1G037400 Rw1G037420 Rw1G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	186, 348
AciI	CCGC	2 cut(s)	231, 629
AclWI	GGATC	4 cut(s)	145, 170, 474, 1171
AcsI	RAATTY	1 cut(s)	1140
AcuI	CTGAAG	1 cut(s)	1154
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	3 cut(s)	116, 148, 188
AgeI	ACCGGT	1 cut(s)	124
AgsI	TTSAA	7 cut(s)	260, 369, 476, 488, 655, 737, 743
AjnI	CCWGG	2 cut(s)	157, 755
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	6 cut(s)	30, 394, 665, 727, 1100, 1269
AluI	AGCT	6 cut(s)	30, 394, 665, 727, 1100, 1269
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	7 cut(s)	232, 245, 432, 755, 801, 982, 1198
AlwI	GGATC	4 cut(s)	145, 170, 474, 1171
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	4 cut(s)	283, 491, 1124, 1189
ApeKI	GCWGC	2 cut(s)	727, 772
ApoI	RAATTY	1 cut(s)	1140
AsiGI	ACCGGT	1 cut(s)	124
Asp718I	GGTACC	1 cut(s)	186
AspS9I	GGNCC	3 cut(s)	491, 500, 1190
AsuHPI	GGTGA	5 cut(s)	16, 234, 550, 664, 828
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	500
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BanI	GGYRCC	2 cut(s)	186, 348
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	99, 964
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	714, 784
BccI	CCATC	1 cut(s)	1007
BciT130I	CCWGG	2 cut(s)	159, 757
BciVI	GTATCC	1 cut(s)	343
BcoDI	GTCTC	7 cut(s)	232, 245, 432, 755, 801, 982, 1198
BfaI	CTAG	7 cut(s)	20, 287, 303, 327, 416, 854, 1122
BfmI	CTRYAG	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	728, 773
BlsI	GCNGC	2 cut(s)	729, 774
Bme1390I	CCNGG	2 cut(s)	159, 757
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	491, 500, 1190
BmiI	GGNNCC	2 cut(s)	188, 350
BmrFI	CCNGG	2 cut(s)	159, 757
BmsI	GCATC	3 cut(s)	6, 315, 330
BpiI	GAAGAC	2 cut(s)	99, 964
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuEI	CTTGAG	1 cut(s)	1080
BsaAI	YACGTR	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	2 cut(s)	245, 432
BsaJI	CCNNGG	4 cut(s)	158, 280, 756, 1193
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	1167, 1197
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	1233, 1280
Bse3DI	GCAATG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	159, 757
BseDI	CCNNGG	4 cut(s)	158, 280, 756, 1193
BseGI	GGATG	2 cut(s)	893, 1229
BseJI	GATNNNNATC	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	4 cut(s)	182, 443, 675, 1034
BseNI	ACTGG	2 cut(s)	1233, 1280
BseXI	GCAGC	2 cut(s)	714, 784
BseYI	CCCAGC	1 cut(s)	723
BsgI	GTGCAG	2 cut(s)	103, 1235
BshFI	GGCC	4 cut(s)	285, 493, 1126, 1191
BshNI	GGYRCC	2 cut(s)	186, 348
BshTI	ACCGGT	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	2 cut(s)	308, 1069
BsmAI	GTCTC	7 cut(s)	232, 245, 432, 755, 801, 982, 1198
BsmFI	GGGAC	2 cut(s)	308, 1069
BsmI	GAATGC	1 cut(s)	1030
BsnI	GGCC	4 cut(s)	285, 493, 1126, 1191
Bso31I	GGTCTC	2 cut(s)	245, 432
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	9 cut(s)	150, 162, 181, 466, 573, 667, 1031, 1089, 1163
BspACI	CCGC	2 cut(s)	231, 629
BspANI	GGCC	4 cut(s)	285, 493, 1126, 1191
BspCNI	CTCAG	4 cut(s)	183, 442, 674, 1033
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	2 cut(s)	188, 350
BspMAI	CTGCAG	1 cut(s)	732
BspPI	GGATC	4 cut(s)	145, 170, 474, 1171
BspT107I	GGYRCC	2 cut(s)	186, 348
BspTNI	GGTCTC	2 cut(s)	245, 432
BsrDI	GCAATG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	1233, 1280
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	4 cut(s)	158, 280, 756, 1193
BssMI	GATC	9 cut(s)	150, 162, 181, 466, 573, 667, 1031, 1089, 1163
BssT1I	CCWWGG	1 cut(s)	1193
Bst2UI	CCWGG	2 cut(s)	159, 757
Bst4CI	ACNGT	3 cut(s)	361, 970, 1222
Bst6I	CTCTTC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	6 cut(s)	191, 395, 429, 521, 661, 1020
BstF5I	GGATG	2 cut(s)	893, 1229
BstKTI	GATC	9 cut(s)	153, 165, 184, 469, 576, 670, 1034, 1092, 1166
BstMAI	GTCTC	7 cut(s)	232, 245, 432, 755, 801, 982, 1198
BstMBI	GATC	9 cut(s)	150, 162, 181, 466, 573, 667, 1031, 1089, 1163
BstNI	CCWGG	2 cut(s)	159, 757
BstSCI	CCNGG	2 cut(s)	157, 755
BstSFI	CTRYAG	1 cut(s)	728
BstSNI	TACGTA	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	714, 784
BstV2I	GAAGAC	2 cut(s)	99, 964
BstX2I	RGATCY	2 cut(s)	162, 1163
BstXI	CCANNNNNNTGG	1 cut(s)	847
BstYI	RGATCY	2 cut(s)	162, 1163
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	4 cut(s)	285, 493, 1126, 1191
BtsCI	GGATG	2 cut(s)	893, 1229
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	3 cut(s)	366, 562, 966
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	1 cut(s)	1078
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	491, 500, 1190
Csp6I	GTAC	3 cut(s)	115, 147, 187
CspAI	ACCGGT	1 cut(s)	124
CviAII	CATG	5 cut(s)	379, 623, 676, 1079, 1208
CviQI	GTAC	3 cut(s)	115, 147, 187
DdeI	CTNAG	6 cut(s)	191, 395, 429, 521, 661, 1020
DpnI	GATC	9 cut(s)	152, 164, 183, 468, 575, 669, 1033, 1091, 1165
DpnII	GATC	9 cut(s)	150, 162, 181, 466, 573, 667, 1031, 1089, 1163
DraIII	CACNNNGTG	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	30
Eco105I	TACGTA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	1193
Eco147I	AGGCCT	2 cut(s)	285, 1126
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	2 cut(s)	245, 432
Eco32I	GATATC	1 cut(s)	1051
Eco47I	GGWCC	1 cut(s)	500
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	1154
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	157, 755
EcoRV	GATATC	1 cut(s)	1051
EcoT14I	CCWWGG	1 cut(s)	1193
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	1193
FaeI	CATG	5 cut(s)	382, 626, 679, 1082, 1211
FaqI	GGGAC	2 cut(s)	308, 1069
FatI	CATG	5 cut(s)	378, 622, 675, 1078, 1207
FauNDI	CATATG	1 cut(s)	748
Fnu4HI	GCNGC	2 cut(s)	728, 773
FokI	GGATG	2 cut(s)	880, 1216
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	728, 773
FspBI	CTAG	7 cut(s)	20, 287, 303, 327, 416, 854, 1122
GluI	GCNGC	2 cut(s)	728, 773
GsaI	CCCAGC	1 cut(s)	727
HaeIII	GGCC	4 cut(s)	285, 493, 1126, 1191
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	5 cut(s)	382, 626, 679, 1082, 1211
HinfI	GANTC	3 cut(s)	412, 1082, 1259
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	5 cut(s)	16, 234, 550, 664, 828
Hpy188I	TCNGA	4 cut(s)	432, 587, 1023, 1168
Hpy188III	TCNNGA	2 cut(s)	655, 1079
HpyAV	CCTTC	5 cut(s)	164, 482, 661, 720, 1001
HpyCH4III	ACNGT	3 cut(s)	361, 970, 1222
HpyCH4IV	ACGT	4 cut(s)	48, 92, 113, 214
HpyF3I	CTNAG	6 cut(s)	191, 395, 429, 521, 661, 1020
HpySE526I	ACGT	4 cut(s)	48, 92, 113, 214
Hsp92II	CATG	5 cut(s)	382, 626, 679, 1082, 1211
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	9 cut(s)	150, 162, 181, 466, 573, 667, 1031, 1089, 1163
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	2 cut(s)	714, 784
LweI	GCATC	3 cut(s)	6, 315, 330
MaeI	CTAG	7 cut(s)	20, 287, 303, 327, 416, 854, 1122
MaeII	ACGT	4 cut(s)	48, 92, 113, 214
MaeIII	GTNAC	3 cut(s)	361, 703, 751
MalI	GATC	9 cut(s)	152, 164, 183, 468, 575, 669, 1033, 1091, 1165
MboI	GATC	9 cut(s)	150, 162, 181, 466, 573, 667, 1031, 1089, 1163
MboII	GAAGA	8 cut(s)	99, 133, 157, 163, 444, 964, 1016, 1147
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	2 cut(s)	162, 1163
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	8 cut(s)	78, 133, 457, 561, 696, 715, 738, 1140
MlyI	GAGTC	3 cut(s)	421, 1091, 1268
MnlI	CCTC	8 cut(s)	179, 275, 376, 513, 545, 786, 907, 1204
MseI	TTAA	4 cut(s)	132, 408, 816, 1272
MslI	CAYNNNNRTG	2 cut(s)	125, 1077
MspA1I	CMGCKG	2 cut(s)	665, 727
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	159, 757
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	1030
MvaI	CCWGG	2 cut(s)	159, 757
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	9 cut(s)	150, 162, 181, 466, 573, 667, 1031, 1089, 1163
NlaIII	CATG	5 cut(s)	382, 626, 679, 1082, 1211
NlaIV	GGNNCC	2 cut(s)	188, 350
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	3 cut(s)	361, 703, 751
OliI	CACNNNNGTG	1 cut(s)	125
PagI	TCATGA	1 cut(s)	1078
PceI	AGGCCT	2 cut(s)	285, 1126
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PctI	GAATGC	1 cut(s)	1030
PinAI	ACCGGT	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	729, 774
PleI	GAGTC	3 cut(s)	420, 1090, 1267
PpsI	GAGTC	3 cut(s)	420, 1090, 1267
Ppu21I	YACGTR	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	157, 755
PspFI	CCCAGC	1 cut(s)	723
PspGI	CCWGG	2 cut(s)	157, 755
PspN4I	GGNNCC	2 cut(s)	188, 350
PspPI	GGNCC	3 cut(s)	491, 500, 1190
PstI	CTGCAG	1 cut(s)	732
PsuI	RGATCY	2 cut(s)	162, 1163
PvuII	CAGCTG	2 cut(s)	665, 727
RsaI	GTAC	3 cut(s)	116, 148, 188
RsaNI	GTAC	3 cut(s)	115, 147, 187
RseI	CAYNNNNRTG	2 cut(s)	125, 1077
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	132, 408, 816, 1272
SatI	GCNGC	2 cut(s)	728, 773
Sau3AI	GATC	9 cut(s)	150, 162, 181, 466, 573, 667, 1031, 1089, 1163
Sau96I	GGNCC	3 cut(s)	491, 500, 1190
SchI	GAGTC	3 cut(s)	421, 1091, 1268
ScrFI	CCNGG	2 cut(s)	159, 757
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	3 cut(s)	6, 315, 330
SfcI	CTRYAG	1 cut(s)	728
SgrAI	CRCCGGYG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	2 cut(s)	125, 1077
SmlI	CTYRAG	1 cut(s)	1095
SmoI	CTYRAG	1 cut(s)	1095
SnaBI	TACGTA	1 cut(s)	114
Sse9I	AATT	8 cut(s)	78, 133, 457, 561, 696, 715, 738, 1140
SseBI	AGGCCT	2 cut(s)	285, 1126
SsiI	CCGC	2 cut(s)	231, 629
SspMI	CTAG	7 cut(s)	20, 287, 303, 327, 416, 854, 1122
SstI	GAGCTC	1 cut(s)	32
StuI	AGGCCT	2 cut(s)	285, 1126
StyD4I	CCNGG	2 cut(s)	157, 755
StyI	CCWWGG	1 cut(s)	1193
TaaI	ACNGT	3 cut(s)	361, 970, 1222
TaiI	ACGT	4 cut(s)	51, 95, 116, 217
TaqI	TCGA	3 cut(s)	957, 1002, 1053
TasI	AATT	8 cut(s)	78, 133, 457, 561, 696, 715, 738, 1140
Tru1I	TTAA	4 cut(s)	132, 408, 816, 1272
Tru9I	TTAA	4 cut(s)	132, 408, 816, 1272
TscAI	CASTG	3 cut(s)	366, 562, 973
TseFI	GTSAC	3 cut(s)	361, 703, 751
TseI	GCWGC	2 cut(s)	727, 772
Tsp45I	GTSAC	3 cut(s)	361, 703, 751
TspDTI	ATGAA	4 cut(s)	163, 498, 964, 1218
TspRI	CASTG	3 cut(s)	366, 562, 973
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	1140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1112
XspI	CTAG	7 cut(s)	20, 287, 303, 327, 416, 854, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.