Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001860

Physical Location & Seq

Genomic Coordinates Forward (+)

3170886 .. 3172108

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGCTAGGGTTTGGGGTAATGTTTATTTCACTCTTGGTTTGGTCTCTATCTAACTACTTGATTACCAGCTTCGACAACCTCCATATGCATATGAATATGACTACGATGATGAGCATGGATAAAGTATGGCAAAGCAAGTTTCGAAGTGTATCGCTGAGACTTGGGTACATTGGGAACATATGCTGGGCGTTTCTCTTCTTTCCTGTGACTCGAAGCTCTTCGATTTTACACATGTTTGGGCTCACATCGGAGTCGAGTATAAAGTACCATATTTGGCTTGGCCATCTCTCCATGCTTCTATTTTCTGTACACACCGTAGGCTTCATCATCTACTGGGGCATGACTCATCAAATGGCTGAAATGCTAGAATGGAGCGCGACTTATGTATCAAACGTAGCTGGGGAGATTGCAATTGTATTTGCAATGGCAATGTGGGTGACAAGCATTCCTCGTGTTAGACGGAAAATGTTTGAATCTTCCCGACACGCTGCTTTAGTCTCAGCACGGGTTTTACCTTGTGAAACAATTGAGCTCAACTTCTCCAAGAGCAAAGGATTGGATTATAATCCTACTAGCATCTTGTTCGTCAATGTGCCTAGCATATCAAAGTTGCAATGGCACCCATTTACAGTGAATTCAAACTCTAACATGGAGGCGGACAAAATAAGTGTTGTGGTTAAGAGTTTAGGAAGTTGGTCTCAAAAGCTTTATAAGCAACTGGCTTCTAATTCGGTGGAGCATATCCAAGTTTCTGTTGAAGGACCTTATGGACCTACTTCATCTCATTTTATGAGGTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

268

Amino Acids

30.48

Weight (kDa)

9.23

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferric_reduct	PF01794	55 - 160	2.1e-15	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	166 - 261	1.6e-24	FAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23980 AT5G23990 AT5G23990 AT5G23990
fragaria_vesca	FvH4_7g30120 FvH4_7g30120 FvH4_7g30141
malus_domestica	MD01G1207200.v1.1 MD07G1278100.v1.1
prunus_persica	Prupe.2G299900_v2.0.a1
pyrus_communis	pycom07g25310
rosa_chinensis	RchiOBHm_Chr1g0378121 RchiOBHm_Chr1g0378131 RchiOBHm_Chr1g0378151 RchiOBHm_Chr1g0378171
rosa_laevigata	RLG00000026465 RLG00000026467 RLG00000026469 RLG00000026470
rosa_multiflora	Rmu_sc0000625.1_g000007 Rmu_sc0000625.1_g000009 Rmu_sc0001465.1_g000007 Rmu_sc0001465.1_g000010
rosa_roxburghii	Rroxscaffold_156G00440270 Rroxscaffold_4G00280700 Rroxscaffold_4G00280710 Rroxscaffold_4G00280730 Rroxscaffold_4G00280760
rosa_rugosa	Rorug01G0406500 Rorug01G0406700
rosa_samantha	Rh1AG423000 Rh1AG423100 Rh1AG423300 Rh1BG385300 Rh1BG385500 Rh1BG385800 Rh1CG399300 Rh1CG399500 Rh1CG399600 Rh1DG416500 Rh1DG416700 Rh1DG416900
rosa_wichuraiana	Rw1G037390 Rw1G037400 Rw1G037420 Rw1G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	567, 714
AccB1I	GGYRCC	1 cut(s)	621
AccII	CGCG	1 cut(s)	380
AciI	CCGC	1 cut(s)	659
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	637
AfaI	GTAC	3 cut(s)	170, 269, 312
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	476, 642, 761
AluBI	AGCT	6 cut(s)	7, 72, 219, 401, 535, 709
AluI	AGCT	6 cut(s)	7, 72, 219, 401, 535, 709
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	4 cut(s)	51, 154, 505, 705
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	637
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	764, 773
AsuHPI	GGTGA	1 cut(s)	451
AsuII	TTCGAA	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	764, 773
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BalI	TGGCCA	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	621
BanII	GRGCYC	2 cut(s)	246, 537
BauI	CACGAG	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	294
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BcoDI	GTCTC	4 cut(s)	51, 154, 505, 705
BfaI	CTAG	4 cut(s)	8, 368, 576, 600
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
Bme18I	GGWCC	2 cut(s)	764, 773
BmgT120I	GGNCC	2 cut(s)	764, 773
BmiI	GGNNCC	1 cut(s)	623
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	588
BmuI	ACTGGG	1 cut(s)	346
Bpu14I	TTCGAA	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	567
BsaI	GGTCTC	2 cut(s)	51, 705
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	341, 726
Bse3DI	GCAATG	3 cut(s)	432, 438, 623
Bse8I	GATNNNNATC	1 cut(s)	567
BseJI	GATNNNNATC	1 cut(s)	567
BseMI	GCAATG	3 cut(s)	432, 438, 623
BseMII	CTCAG	2 cut(s)	149, 516
BseNI	ACTGG	2 cut(s)	341, 726
BseXI	GCAGC	1 cut(s)	478
BseYI	CCCAGC	2 cut(s)	186, 401
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	537
BsmAI	GTCTC	4 cut(s)	51, 154, 505, 705
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	2 cut(s)	51, 705
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	246, 537
Bsp1407I	TGTACA	1 cut(s)	310
BspACI	CCGC	1 cut(s)	659
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	150, 515
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	623
BspQI	GCTCTTC	1 cut(s)	226
BspT104I	TTCGAA	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	621
BspTNI	GGTCTC	2 cut(s)	51, 705
BsrDI	GCAATG	3 cut(s)	432, 438, 623
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	341, 726
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	319, 634
Bst6I	CTCTTC	2 cut(s)	203, 226
BstAUI	TGTACA	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	158, 502
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	380
BstMAI	GTCTC	4 cut(s)	51, 154, 505, 705
BstMWI	GCNNNNNNNGC	1 cut(s)	715
BstNSI	RCATGY	1 cut(s)	238
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	639
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	764, 773
Csp6I	GTAC	3 cut(s)	169, 268, 311
CviAII	CATG	5 cut(s)	118, 235, 295, 343, 652
CviQI	GTAC	3 cut(s)	169, 268, 311
DdeI	CTNAG	2 cut(s)	158, 502
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	203, 226
EarI	CTCTTC	2 cut(s)	203, 226
EciI	GGCGGA	1 cut(s)	674
Ecl136II	GAGCTC	1 cut(s)	535
Eco24I	GRGCYC	2 cut(s)	246, 537
Eco31I	GGTCTC	2 cut(s)	51, 705
Eco47I	GGWCC	2 cut(s)	764, 773
Eco53kI	GAGCTC	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRI	GAATTC	1 cut(s)	637
EcoT22I	ATGCAT	1 cut(s)	93
EcoT38I	GRGCYC	2 cut(s)	246, 537
FaeI	CATG	5 cut(s)	121, 238, 298, 346, 655
FatI	CATG	5 cut(s)	117, 234, 294, 342, 651
FauNDI	CATATG	3 cut(s)	87, 93, 182
Fnu4HI	GCNGC	1 cut(s)	492
FriOI	GRGCYC	2 cut(s)	246, 537
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	4 cut(s)	8, 368, 576, 600
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	492
GsaI	CCCAGC	2 cut(s)	190, 405
HaeIII	GGCC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	5 cut(s)	121, 238, 298, 346, 655
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	4 cut(s)	211, 254, 346, 476
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	313, 801
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	483
Hpy8I	GTNNAC	2 cut(s)	313, 801
HpyAV	CCTTC	1 cut(s)	755
HpyCH4III	ACNGT	2 cut(s)	319, 634
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	91, 413, 425, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	715
HpyF3I	CTNAG	2 cut(s)	158, 502
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	5 cut(s)	121, 238, 298, 346, 655
HspAI	GCGC	1 cut(s)	378
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	3 cut(s)	4, 375, 739
LpnPI	CCDG	6 cut(s)	82, 172, 219, 322, 387, 707
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	4 cut(s)	8, 368, 576, 600
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	208, 439
MboII	GAAGA	3 cut(s)	190, 213, 471
MfeI	CAATTG	2 cut(s)	414, 528
MhlI	GDGCHC	2 cut(s)	246, 537
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	4 cut(s)	414, 528, 637, 730
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	3 cut(s)	205, 263, 340
MnlI	CCTC	4 cut(s)	92, 462, 649, 789
Mox20I	TGGCCA	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	93
MroXI	GAANNNNTTC	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	2 cut(s)	681, 805
Msp20I	TGGCCA	1 cut(s)	285
MunI	CAATTG	2 cut(s)	414, 528
Mva1269I	GAATGC	1 cut(s)	447
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	715
NdeI	CATATG	3 cut(s)	87, 93, 182
NlaIII	CATG	5 cut(s)	121, 238, 298, 346, 655
NlaIV	GGNNCC	1 cut(s)	623
NmuCI	GTSAC	2 cut(s)	208, 439
NsiI	ATGCAT	1 cut(s)	93
NspI	RCATGY	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	145
PciI	ACATGT	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	226
PctI	GAATGC	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	3 cut(s)	205, 262, 340
PpsI	GAGTC	3 cut(s)	205, 262, 340
PpuMI	RGGWCCY	1 cut(s)	764
PscI	ACATGT	1 cut(s)	234
PsiI	TTATAA	2 cut(s)	567, 714
Psp124BI	GAGCTC	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	764
PspFI	CCCAGC	2 cut(s)	186, 401
PspN4I	GGNNCC	1 cut(s)	623
PspPI	GGNCC	2 cut(s)	764, 773
PspPPI	RGGWCCY	1 cut(s)	764
RsaI	GTAC	3 cut(s)	170, 269, 312
RsaNI	GTAC	3 cut(s)	169, 268, 311
SacI	GAGCTC	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	681, 805
SatI	GCNGC	1 cut(s)	492
Sau96I	GGNCC	2 cut(s)	764, 773
SchI	GAGTC	3 cut(s)	205, 263, 340
SduI	GDGCHC	2 cut(s)	246, 537
SfaNI	GCATC	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	145
SinI	GGWCC	2 cut(s)	764, 773
Sse9I	AATT	4 cut(s)	414, 528, 637, 730
SsiI	CCGC	1 cut(s)	659
SspMI	CTAG	4 cut(s)	8, 368, 576, 600
SstI	GAGCTC	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	319, 634
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	5 cut(s)	75, 145, 214, 224, 257
TasI	AATT	4 cut(s)	414, 528, 637, 730
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	681, 805
Tru9I	TTAA	2 cut(s)	681, 805
TscAI	CASTG	1 cut(s)	639
TseFI	GTSAC	2 cut(s)	208, 439
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	2 cut(s)	208, 439
TspDTI	ATGAA	3 cut(s)	110, 316, 771
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	639
VpaK11BI	GGWCC	2 cut(s)	764, 773
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	4 cut(s)	8, 368, 576, 600
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.