Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001860

Physical Location & Seq

Genomic Coordinates Forward (+)

65266889 .. 65268653

Gene Structure 1765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG423100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGTGATGATGCATATGCTAGAATGGAGCTCAACTCGGGTATCAAGCGTAGCAGGGGAGATTGCAATAGTGTTTGCAATTGCAATCTCTACGTTCTCTACATCGTCTTCTACGTACTGCACACCGGTGCTTAATTATTTCTTCTGTACGATCCTTCCTGGGATCTTCCTCTTCATCATAGATCGGTACCTGAGATTTTTACAATCTTATCAACGTGCCAAGTTAGTCTCCGCACGCATTTCACCTTGTGAGACCATTGAACTCAACTTCTCCAAGAGCCGAGGCCTAGATTATAATCCCACTAGCATCTTGTTTATCAATGTCCCTAGTGTATCCAAGATGCAATGGCACCCATTTACAGTGACTTCAAACTCTAACATGGAGGCAGATAAGCTAAGTGTTAAACTTTACCAGCAACTTTCTTCTAATTCTGTGGATCATATTCAAGTTTCTGTTGAAGGGCCTTATGGACCTCGTTCATCTCATTTTCTAAGGCACAAGGCTCTGGTGATGATTAGTGGAGGCAGTGGAATTACACCGATGATCTCCATAATCCGAGAAATCATTTTCCAAAGCACCAAACCAGACTGCCATGTTCCGCCTGTTCGGTTGATATGTGCCTTCAAGAACTCAGCTGATCTCACCATGCTACAACTCTTGCTTCCAATTTCTGTCACACCTTCTAATTTTACCCAGCTGCAGTTTCAAATTGAAGCATATGTGACCAGGGAGACACACAAGCAGCCTCCACCAGAACCCCACAAGTCTCTCCAAACCTTATGGTTTAAGCCAAACCAACTGAACTCACCCATTTCTTTGGTTCTAGGACAAAACACTTGGCTATGGCTTGGTGCTATAATCTCATCCTCATTTGTCTTATTTCTCTTTGTTTTGGGCATTGTCAATCGTTTCTATATATACCCAATCGACCACAACACTGGTGAACACTACCATGTCTCCTTCATTTGCCTGTGGTACAAGTTTTTGGTCTGTGCTGTCAAGAGTATAGAAGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

339

Amino Acids

38.43

Weight (kDa)

8.78

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_8	PF08022	73 - 159	2.2e-15	FAD-binding domain
NAD_binding_6	PF08030	167 - 264	9.3e-13	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23980 AT5G23990 AT5G23990 AT5G23990
fragaria_vesca	FvH4_7g30120 FvH4_7g30120 FvH4_7g30141
malus_domestica	MD01G1207200.v1.1 MD07G1278100.v1.1
prunus_persica	Prupe.2G299900_v2.0.a1
pyrus_communis	pycom07g25310
rosa_chinensis	RchiOBHm_Chr1g0378121 RchiOBHm_Chr1g0378131 RchiOBHm_Chr1g0378151 RchiOBHm_Chr1g0378171
rosa_laevigata	RLG00000026465 RLG00000026467 RLG00000026469 RLG00000026470
rosa_multiflora	Rmu_sc0000625.1_g000007 Rmu_sc0000625.1_g000009 Rmu_sc0001465.1_g000007 Rmu_sc0001465.1_g000010
rosa_roxburghii	Rroxscaffold_156G00440270 Rroxscaffold_4G00280700 Rroxscaffold_4G00280710 Rroxscaffold_4G00280730 Rroxscaffold_4G00280760
rosa_rugosa	Rorug01G0406500 Rorug01G0406700
rosa_samantha	Rh1AG423000 Rh1AG423100 Rh1AG423300 Rh1BG385300 Rh1BG385500 Rh1BG385800 Rh1CG399300 Rh1CG399500 Rh1CG399600 Rh1DG416500 Rh1DG416700 Rh1DG416900
rosa_wichuraiana	Rw1G037390 Rw1G037400 Rw1G037420 Rw1G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	186, 348
AciI	CCGC	2 cut(s)	231, 599
AclWI	GGATC	3 cut(s)	145, 170, 444
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	4 cut(s)	116, 148, 188, 977
AgeI	ACCGGT	1 cut(s)	124
AgsI	TTSAA	7 cut(s)	260, 369, 446, 458, 625, 707, 713
AjnI	CCWGG	2 cut(s)	157, 725
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	4 cut(s)	30, 394, 635, 697
AluI	AGCT	4 cut(s)	30, 394, 635, 697
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	5 cut(s)	232, 245, 725, 771, 961
AlwI	GGATC	3 cut(s)	145, 170, 444
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	283, 461
ApeKI	GCWGC	2 cut(s)	697, 742
AsiGI	ACCGGT	1 cut(s)	124
Asp718I	GGTACC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	461, 470
AsuHPI	GGTGA	6 cut(s)	16, 234, 520, 634, 798, 953
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BanI	GGYRCC	2 cut(s)	186, 348
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	684, 754
BciT130I	CCWGG	2 cut(s)	159, 727
BciVI	GTATCC	1 cut(s)	343
BcoDI	GTCTC	5 cut(s)	232, 245, 725, 771, 961
BfaI	CTAG	5 cut(s)	20, 287, 303, 327, 824
BfmI	CTRYAG	1 cut(s)	698
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	698, 743
BlsI	GCNGC	2 cut(s)	699, 744
Bme1390I	CCNGG	2 cut(s)	159, 727
Bme18I	GGWCC	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	461, 470
BmiI	GGNNCC	2 cut(s)	188, 350
BmrFI	CCNGG	2 cut(s)	159, 727
BmsI	GCATC	2 cut(s)	315, 330
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BsaAI	YACGTR	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	158, 280, 726
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	941, 971
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	943
Bse3DI	GCAATG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	159, 727
BseDI	CCNNGG	3 cut(s)	158, 280, 726
BseGI	GGATG	1 cut(s)	863
BseJI	GATNNNNATC	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	2 cut(s)	182, 645
BseNI	ACTGG	1 cut(s)	943
BseXI	GCAGC	2 cut(s)	684, 754
BseYI	CCCAGC	1 cut(s)	693
BsgI	GTGCAG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	285, 463
BshNI	GGYRCC	2 cut(s)	186, 348
BshTI	ACCGGT	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	308
BsmAI	GTCTC	5 cut(s)	232, 245, 725, 771, 961
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	285, 463
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	6 cut(s)	150, 162, 181, 436, 543, 637
BspACI	CCGC	2 cut(s)	231, 599
BspANI	GGCC	2 cut(s)	285, 463
BspCNI	CTCAG	2 cut(s)	183, 644
BspLI	GGNNCC	2 cut(s)	188, 350
BspMAI	CTGCAG	1 cut(s)	702
BspPI	GGATC	3 cut(s)	145, 170, 444
BspT107I	GGYRCC	2 cut(s)	186, 348
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	943
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	158, 280, 726
BssMI	GATC	6 cut(s)	150, 162, 181, 436, 543, 637
Bst2UI	CCWGG	2 cut(s)	159, 727
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	4 cut(s)	191, 395, 491, 631
BstF5I	GGATG	1 cut(s)	863
BstKTI	GATC	6 cut(s)	153, 165, 184, 439, 546, 640
BstMAI	GTCTC	5 cut(s)	232, 245, 725, 771, 961
BstMBI	GATC	6 cut(s)	150, 162, 181, 436, 543, 637
BstNI	CCWGG	2 cut(s)	159, 727
BstSCI	CCNGG	2 cut(s)	157, 725
BstSFI	CTRYAG	1 cut(s)	698
BstSNI	TACGTA	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	684, 754
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	162
BstXI	CCANNNNNNTGG	2 cut(s)	817, 938
BstYI	RGATCY	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	285, 463
BtsCI	GGATG	1 cut(s)	863
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	3 cut(s)	366, 532, 936
Cac8I	GCNNGC	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	461, 470
Csp6I	GTAC	4 cut(s)	115, 147, 187, 976
CspAI	ACCGGT	1 cut(s)	124
CviAII	CATG	4 cut(s)	379, 593, 646, 953
CviQI	GTAC	4 cut(s)	115, 147, 187, 976
DdeI	CTNAG	4 cut(s)	191, 395, 491, 631
DpnI	GATC	6 cut(s)	152, 164, 183, 438, 545, 639
DpnII	GATC	6 cut(s)	150, 162, 181, 436, 543, 637
DraIII	CACNNNGTG	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	588
Ecl136II	GAGCTC	1 cut(s)	30
Eco105I	TACGTA	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	157, 725
EcoT22I	ATGCAT	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	4 cut(s)	382, 596, 649, 956
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	4 cut(s)	378, 592, 645, 952
FauNDI	CATATG	2 cut(s)	15, 718
Fnu4HI	GCNGC	2 cut(s)	698, 743
FokI	GGATG	1 cut(s)	850
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	698, 743
FspBI	CTAG	5 cut(s)	20, 287, 303, 327, 824
GluI	GCNGC	2 cut(s)	698, 743
GsaI	CCCAGC	1 cut(s)	697
HaeIII	GGCC	2 cut(s)	285, 463
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	4 cut(s)	382, 596, 649, 956
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	6 cut(s)	16, 234, 520, 634, 798, 953
Hpy166II	GTNNAC	1 cut(s)	944
Hpy188I	TCNGA	1 cut(s)	557
Hpy188III	TCNNGA	2 cut(s)	625, 1000
Hpy8I	GTNNAC	1 cut(s)	944
HpyAV	CCTTC	5 cut(s)	164, 452, 631, 690, 970
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	92, 113, 214
HpyCH4V	TGCA	7 cut(s)	13, 65, 77, 83, 120, 343, 700
HpyF3I	CTNAG	4 cut(s)	191, 395, 491, 631
HpySE526I	ACGT	3 cut(s)	92, 113, 214
Hsp92II	CATG	4 cut(s)	382, 596, 649, 956
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	150, 162, 181, 436, 543, 637
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	2 cut(s)	684, 754
LweI	GCATC	2 cut(s)	315, 330
MaeI	CTAG	5 cut(s)	20, 287, 303, 327, 824
MaeII	ACGT	3 cut(s)	92, 113, 214
MaeIII	GTNAC	3 cut(s)	361, 673, 721
MalI	GATC	6 cut(s)	152, 164, 183, 438, 545, 639
MboI	GATC	6 cut(s)	150, 162, 181, 436, 543, 637
MboII	GAAGA	5 cut(s)	99, 133, 157, 163, 414
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	7 cut(s)	78, 133, 427, 531, 666, 685, 708
MnlI	CCTC	7 cut(s)	179, 275, 376, 483, 515, 756, 877
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	3 cut(s)	132, 402, 786
MslI	CAYNNNNRTG	2 cut(s)	125, 951
MspA1I	CMGCKG	2 cut(s)	635, 697
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	159, 727
MunI	CAATTG	1 cut(s)	78
MvaI	CCWGG	2 cut(s)	159, 727
NdeI	CATATG	2 cut(s)	15, 718
NdeII	GATC	6 cut(s)	150, 162, 181, 436, 543, 637
NlaIII	CATG	4 cut(s)	382, 596, 649, 956
NlaIV	GGNNCC	2 cut(s)	188, 350
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	3 cut(s)	361, 673, 721
NsiI	ATGCAT	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PinAI	ACCGGT	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	699, 744
Ppu21I	YACGTR	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	157, 725
PspFI	CCCAGC	1 cut(s)	693
PspGI	CCWGG	2 cut(s)	157, 725
PspN4I	GGNNCC	2 cut(s)	188, 350
PspPI	GGNCC	2 cut(s)	461, 470
PstI	CTGCAG	1 cut(s)	702
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	2 cut(s)	635, 697
RsaI	GTAC	4 cut(s)	116, 148, 188, 977
RsaNI	GTAC	4 cut(s)	115, 147, 187, 976
RseI	CAYNNNNRTG	2 cut(s)	125, 951
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	132, 402, 786
SatI	GCNGC	2 cut(s)	698, 743
Sau3AI	GATC	6 cut(s)	150, 162, 181, 436, 543, 637
Sau96I	GGNCC	2 cut(s)	461, 470
ScrFI	CCNGG	2 cut(s)	159, 727
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	2 cut(s)	315, 330
SfcI	CTRYAG	1 cut(s)	698
SgrAI	CRCCGGYG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	2 cut(s)	125, 951
SnaBI	TACGTA	1 cut(s)	114
Sse9I	AATT	7 cut(s)	78, 133, 427, 531, 666, 685, 708
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	2 cut(s)	231, 599
SspMI	CTAG	5 cut(s)	20, 287, 303, 327, 824
SstI	GAGCTC	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	157, 725
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	3 cut(s)	95, 116, 217
TaqI	TCGA	1 cut(s)	927
TasI	AATT	7 cut(s)	78, 133, 427, 531, 666, 685, 708
Tru1I	TTAA	3 cut(s)	132, 402, 786
Tru9I	TTAA	3 cut(s)	132, 402, 786
TscAI	CASTG	3 cut(s)	366, 532, 943
TseFI	GTSAC	3 cut(s)	361, 673, 721
TseI	GCWGC	2 cut(s)	697, 742
Tsp45I	GTSAC	3 cut(s)	361, 673, 721
TspDTI	ATGAA	3 cut(s)	163, 468, 952
TspRI	CASTG	3 cut(s)	366, 532, 943
VpaK11BI	GGWCC	1 cut(s)	470
XspI	CTAG	5 cut(s)	20, 287, 303, 327, 824
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.