Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001860

Physical Location & Seq

Genomic Coordinates Reverse (-)

25668275 .. 25668685

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGCAACCAGACAGTGTCAATTTTAAGATTGATTTTCCTTGTGGTGTTTCTTGGATGGCTTGTGATTTGGATCATGATGCCTACAAAAACCTACAAAAATGGCTGGATGCCCAACTTACAAAGCAAGCTCAATTCTACATATTTTGGAGAGCAAGGGGTTAATCTTCTGCTCTTCTCATTCCCAGTGATGTTAATAGCAGCTTTAAGCTGTGTTTATCTCCATCTCCAAAAGAAATCAATTAGGTCACCATCGTCCACAAGGTTTTTACACTATGATACAACTTCTATACAAATTAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

102

Amino Acids

11.66

Weight (kDa)

9.92

Isoelectric Point (pI)

69.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23980 AT5G23990 AT5G23990 AT5G23990
fragaria_vesca	FvH4_7g30120 FvH4_7g30120 FvH4_7g30141
malus_domestica	MD01G1207200.v1.1 MD07G1278100.v1.1
prunus_persica	Prupe.2G299900_v2.0.a1
pyrus_communis	pycom07g25310
rosa_chinensis	RchiOBHm_Chr1g0378121 RchiOBHm_Chr1g0378131 RchiOBHm_Chr1g0378151 RchiOBHm_Chr1g0378171
rosa_laevigata	RLG00000026465 RLG00000026467 RLG00000026469 RLG00000026470
rosa_multiflora	Rmu_sc0000625.1_g000007 Rmu_sc0000625.1_g000009 Rmu_sc0001465.1_g000007 Rmu_sc0001465.1_g000010
rosa_roxburghii	Rroxscaffold_156G00440270 Rroxscaffold_4G00280700 Rroxscaffold_4G00280710 Rroxscaffold_4G00280730 Rroxscaffold_4G00280760
rosa_rugosa	Rorug01G0406500 Rorug01G0406700
rosa_samantha	Rh1AG423000 Rh1AG423100 Rh1AG423300 Rh1BG385300 Rh1BG385500 Rh1BG385800 Rh1CG399300 Rh1CG399500 Rh1CG399600 Rh1DG416500 Rh1DG416700 Rh1DG416900
rosa_wichuraiana	Rw1G037390 Rw1G037400 Rw1G037420 Rw1G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	80
AluBI	AGCT	3 cut(s)	130, 203, 210
AluI	AGCT	3 cut(s)	130, 203, 210
AlwI	GGATC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	3 cut(s)	51, 231, 259
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	69, 99
BmuI	ACTGGG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	71
BseGI	GGATG	2 cut(s)	62, 114
BseJI	GATNNNNATC	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	75
BspPI	GGATC	1 cut(s)	80
BspQI	GCTCTTC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	128
BstEII	GGTNACC	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	62, 114
BstKTI	GATC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	72
BstPI	GGTNACC	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	62, 114
BtsIMutI	CAGTG	2 cut(s)	21, 192
Cac8I	GCNNGC	1 cut(s)	128
CciI	TCATGA	1 cut(s)	75
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	5 cut(s)	61, 105, 130, 203, 210
CviKI_1	RGCY	5 cut(s)	61, 105, 130, 203, 210
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	246
EcoO65I	GGTNACC	1 cut(s)	246
FaeI	CATG	1 cut(s)	79
FaiI	YATR	6 cut(s)	77, 142, 276, 290, 302, 304
FatI	CATG	1 cut(s)	75
FauNDI	CATATG	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	69, 121
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	179
LpnPI	CCDG	3 cut(s)	23, 91, 198
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	69, 99
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	2 cut(s)	158, 166
MluCI	AATT	4 cut(s)	21, 133, 240, 294
MseI	TTAA	5 cut(s)	26, 162, 194, 206, 297
NdeI	CATATG	1 cut(s)	302
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	246
PagI	TCATGA	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	5 cut(s)	26, 162, 194, 206, 297
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	72
SetI	ASST	6 cut(s)	95, 132, 205, 212, 248, 266
SfaNI	GCATC	2 cut(s)	69, 99
Sse9I	AATT	4 cut(s)	21, 133, 240, 294
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	4 cut(s)	21, 133, 240, 294
Tru1I	TTAA	5 cut(s)	26, 162, 194, 206, 297
Tru9I	TTAA	5 cut(s)	26, 162, 194, 206, 297
TscAI	CASTG	2 cut(s)	21, 192
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	246
TspRI	CASTG	2 cut(s)	21, 192
Tth111I	GACNNNGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.