Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001860

Physical Location & Seq

Genomic Coordinates Forward (+)

3206091 .. 3210504

Gene Structure 4414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGAGCACAAATACAGCAGTAGTATCAGTTATCAGGTTCATATTGCTTCTAGTGTTTGTTGGATGGCTCATCATTTGGATTGTGTTGCCAACCGAAACTTACAGAGATTCCTGGAGACCATACCTACAAGGCAAACTCAACTCAACAAATTTCGGAGATCAAGGGACAAATCTGCTGCTTTTCTCGTTTCCGATGATGTTCATTGCAGCTTTGGGTTGTGTTTATCTCCATCTAATCCTGAAGAGGAAATCAAACAAGTCATCATACTCGACATACTACTCCACAAGCTTTGCTAGCTTCTGGCGACGTCCGGCGAGTGTGAAATCTCCACTGGGCATTGTGACTGCAATGGAGCTCGGTTTCACAATAATGTTTATTGCACTCTTTGTGTGGTCTCTTACCAATTACATACATGTCGGCTTCGCCCACCTCCATAATATGCATACGAAACCAGTTCCAGGCCTGAAAGAGTGGGAAGCAAAGCTTCGTAGCGTGTCGTACAGACTTGGGTTAACCGGAAACATATGTCTGGCATTTCTCTTCTTCCCTGTAACTCGAGGCTCTTCGATTTTGGCTCTGGTTGGCTTAACATCGGAGTCGAGTATCAAGTACCATATTTGGCTCGGCCATCTCTCCATGGTTCTATTTGCTGCTCACTCCCTAGGCTACATCATCTTCTGGGCCATCACTAATCAAATGGCTGAGATGCTAGAATGGAGCAAGACTCATGTATCAAACGTAGCTGGGGAGATTGCAATTCTATTTGCAGTGGCAATGTGGGTGACTAGCATTCCTCGTGTTAGACGAAAAATGTTTGAATTATTTTTCTGCACCCACCAGCTCTACATTCTCTACATCGTCTTCTACGTACTGCACGCCGGTGAAAACTTCTTCAGTACGATCCTTCCTGGGATCTTCCTCTTCATCATAGATCGGTACCTGAGATTTTTACAGTCTAATCAACGTGCTGAGTTACTCTCCGCACGCATTTTACCTTGTAAGACCATTGAACTGAACTTCTCCAAGAGCCAAGGTCTGGATTATAATCCCACTAGCATCTTGTTTATCAATGTGCCTACTATATCCAAGACGCAATGGCACCCATTTACAGTGACTTCGAACTCTAACATGGAGGCAGACAAGCTAACTGTTGTGATTAAGAGTCTAGGAAGTTGGTCTCAGAAACTTTACCAACAACTTTCTTCTAATTCTATGGATCATATTCAAGTTTCTGTTGAAGGGCCTTATGGACCTAATTCATCTCATTTTCTAAGGCACAAGGCTCTGGTGATGATTAGTGGAGGCAGTGGAATTACTCCGATGATCTCCATAATCCGAGAAATCATTTTCCAAAGCACCAAACCAGATTGCCATGTTCCGCCTGTTCGGTTGATATGTGCCTTCAAGAACTCAGCTGATTTCACCATGCTACAACTCTTGCTTCCAATTTCTGTCACACCTTCTAATTTTACCCAGCTGCAGTTTCAAATTGAAGCTTATGTGACCAGGGAGACACAGAAGCTACCTCCATCAGACTCCCTCAAGCTTCTCCAAACCCTATGGTTTAAGCCAGACCCACTGGACTCACCCATTTCTTTGGTTCTAGGACAAAACACTTGGCTATGGCTTGGTGCTATAATCTCATCCTCATTTGTCTTATTTCTCTTTGTTTTGGGCATTGTCAATCGTTTCTATATATACCCAATTGAACACAACACTGGTGAACACTACCATGTCTCCTTCATTTGCCTGTGGTACATGTTTTTGGTCTGTGCCTCCATTTTCATAGTCTCCAGTGCAGTCTTCATTTGCTGCAAGAGACAGAACGCCATTGAAGAAGGGAAGCGAACTCAGAATGCGAGATCAACACCAACAACTGATATCGAACTTGCGAGTTCTCCCCATAATCATAAGTCCCTGATCGCTCAAGCTACCCGAGTGCATTATGGAACTAGGCCTGACCTAAGGAAAATTTTGTTGGAGACCAAAGGATCTGATATTGGAGTGTTGGTTTGTGGCCCAAGGAAGATGAGGCATGAGGTTGCCACAGTTTGTTCATCCAGTTTGGCAGATAATCTGCACTTTGAGTCCATTAGCTTTAACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

702

Amino Acids

79.63

Weight (kDa)

9.31

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferric_reduct	PF01794	169 - 289	1.1e-19	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	324 - 419	2.7e-23	FAD-binding domain
NAD_binding_6	PF08030	427 - 685	5.5e-21	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23980 AT5G23990 AT5G23990 AT5G23990
fragaria_vesca	FvH4_7g30120 FvH4_7g30120 FvH4_7g30141
malus_domestica	MD01G1207200.v1.1 MD07G1278100.v1.1
prunus_persica	Prupe.2G299900_v2.0.a1
pyrus_communis	pycom07g25310
rosa_chinensis	RchiOBHm_Chr1g0378121 RchiOBHm_Chr1g0378131 RchiOBHm_Chr1g0378151 RchiOBHm_Chr1g0378171
rosa_laevigata	RLG00000026465 RLG00000026467 RLG00000026469 RLG00000026470
rosa_multiflora	Rmu_sc0000625.1_g000007 Rmu_sc0000625.1_g000009 Rmu_sc0001465.1_g000007 Rmu_sc0001465.1_g000010
rosa_roxburghii	Rroxscaffold_156G00440270 Rroxscaffold_4G00280700 Rroxscaffold_4G00280710 Rroxscaffold_4G00280730 Rroxscaffold_4G00280760
rosa_rugosa	Rorug01G0406500 Rorug01G0406700
rosa_samantha	Rh1AG423000 Rh1AG423100 Rh1AG423300 Rh1BG385300 Rh1BG385500 Rh1BG385800 Rh1CG399300 Rh1CG399500 Rh1CG399600 Rh1DG416500 Rh1DG416700 Rh1DG416900
rosa_wichuraiana	Rw1G037390 Rw1G037400 Rw1G037420 Rw1G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1044
AatII	GACGTC	1 cut(s)	310
Acc65I	GGTACC	1 cut(s)	936
AccB1I	GGYRCC	2 cut(s)	936, 1098
AccB7I	CCANNNNNTGG	1 cut(s)	1036
AciI	CCGC	2 cut(s)	981, 1379
AclWI	GGATC	4 cut(s)	895, 920, 1224, 1999
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	2 cut(s)	148, 1971
AcuI	CTGAAG	2 cut(s)	260, 877
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	6 cut(s)	500, 611, 870, 898, 938, 1757
AfiI	CCNNNNNNNGG	2 cut(s)	458, 1036
AflIII	ACRYGT	2 cut(s)	412, 1758
AgsI	TTSAA	9 cut(s)	818, 1010, 1226, 1238, 1405, 1487, 1493, 1709, 1835
AjnI	CCWGG	4 cut(s)	110, 457, 907, 1505
AjuI	GAANNNNNNNTTGG	2 cut(s)	1961, 1993
AleI	CACNNNNGTG	1 cut(s)	879
Alw21I	GWGCWC	2 cut(s)	8, 357
Alw26I	GTCTC	8 cut(s)	109, 399, 1182, 1505, 1741, 1795, 1813, 1976
AlwI	GGATC	4 cut(s)	895, 920, 1224, 1999
Ama87I	CYCGRG	2 cut(s)	555, 1935
AoxI	GGCC	6 cut(s)	460, 625, 681, 1241, 1955, 2017
ApeKI	GCWGC	5 cut(s)	175, 206, 650, 1477, 1812
ApoI	RAATTY	2 cut(s)	148, 1971
Asp718I	GGTACC	1 cut(s)	936
AspA2I	CCTAGG	1 cut(s)	661
AspS9I	GGNCC	4 cut(s)	681, 1241, 1250, 2018
AsuHPI	GGTGA	6 cut(s)	793, 893, 1300, 1414, 1578, 1733
AsuII	TTCGAA	1 cut(s)	1118
AsuNHI	GCTAGC	1 cut(s)	293
AvaI	CYCGRG	2 cut(s)	555, 1935
AvaII	GGWCC	1 cut(s)	1250
AvrII	CCTAGG	1 cut(s)	661
AxyI	CCTNAGG	1 cut(s)	1964
BaeI	ACNNNNGTAYC	2 cut(s)	714, 747
BanI	GGYRCC	2 cut(s)	936, 1098
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	795
BbsI	GAAGAC	2 cut(s)	853, 1795
Bbv12I	GWGCWC	2 cut(s)	8, 357
BbvI	GCAGC	5 cut(s)	162, 218, 637, 1464, 1799
BccI	CCATC	5 cut(s)	57, 237, 636, 692, 1537
BciT130I	CCWGG	4 cut(s)	112, 459, 909, 1507
BcoDI	GTCTC	8 cut(s)	109, 399, 1182, 1505, 1741, 1795, 1813, 1976
BfaI	CTAG	9 cut(s)	50, 294, 662, 710, 786, 1053, 1166, 1604, 1953
BfmI	CTRYAG	1 cut(s)	1478
BisI	GCNGC	5 cut(s)	176, 207, 651, 1478, 1813
BlnI	CCTAGG	1 cut(s)	661
BlsI	GCNGC	5 cut(s)	177, 208, 652, 1479, 1814
Bme1390I	CCNGG	4 cut(s)	112, 459, 909, 1507
Bme18I	GGWCC	1 cut(s)	1250
BmeT110I	CYCGRG	2 cut(s)	555, 1935
BmgT120I	GGNCC	4 cut(s)	681, 1241, 1250, 2018
BmiI	GGNNCC	2 cut(s)	938, 1100
BmrFI	CCNGG	4 cut(s)	112, 459, 909, 1507
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	696, 1065
BmtI	GCTAGC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	2 cut(s)	853, 1795
BplI	GAGNNNNNCTC	4 cut(s)	709, 741, 962, 994
BpmI	CTGGAG	2 cut(s)	133, 1777
Bpu14I	TTCGAA	1 cut(s)	1118
BpuEI	CTTGAG	2 cut(s)	1526, 1911
BsaAI	YACGTR	1 cut(s)	868
BsaBI	GATNNNNATC	1 cut(s)	1044
BsaHI	GRCGYC	1 cut(s)	307
BsaI	GGTCTC	4 cut(s)	109, 399, 1182, 1976
BsaJI	CCNNGG	6 cut(s)	636, 661, 908, 1030, 1506, 2021
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	4 cut(s)	1721, 1751, 1995, 2025
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 1036
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	7 cut(s)	336, 452, 1584, 1723, 1794, 2061, 2108
Bse21I	CCTNAGG	1 cut(s)	1964
Bse3DI	GCAATG	4 cut(s)	201, 354, 780, 1100
Bse8I	GATNNNNATC	1 cut(s)	1044
BseBI	CCWGG	4 cut(s)	112, 459, 909, 1507
BseDI	CCNNGG	6 cut(s)	636, 661, 908, 1030, 1506, 2021
BseGI	GGATG	3 cut(s)	68, 1643, 2057
BseJI	GATNNNNATC	1 cut(s)	1044
BseLI	CCNNNNNNNGG	2 cut(s)	458, 1036
BseMI	GCAATG	4 cut(s)	201, 354, 780, 1100
BseMII	CTCAG	6 cut(s)	693, 932, 960, 1193, 1425, 1865
BseNI	ACTGG	7 cut(s)	336, 452, 1584, 1723, 1794, 2061, 2108
BseXI	GCAGC	5 cut(s)	162, 218, 637, 1464, 1799
BseYI	CCCAGC	2 cut(s)	743, 1473
BsgI	GTGCAG	4 cut(s)	814, 857, 1818, 2063
BshFI	GGCC	6 cut(s)	462, 627, 683, 1243, 1957, 2019
BshNI	GGYRCC	2 cut(s)	936, 1098
BsiHKAI	GWGCWC	2 cut(s)	8, 357
BsiHKCI	CYCGRG	2 cut(s)	555, 1935
BsiSI	CCGG	3 cut(s)	311, 516, 879
BslFI	GGGAC	2 cut(s)	178, 1900
BslI	CCNNNNNNNGG	2 cut(s)	458, 1036
BsmAI	GTCTC	8 cut(s)	109, 399, 1182, 1505, 1741, 1795, 1813, 1976
BsmFI	GGGAC	2 cut(s)	178, 1900
BsmI	GAATGC	2 cut(s)	789, 1861
BsnI	GGCC	6 cut(s)	462, 627, 683, 1243, 1957, 2019
Bso31I	GGTCTC	4 cut(s)	109, 399, 1182, 1976
BsoBI	CYCGRG	2 cut(s)	555, 1935
Bsp119I	TTCGAA	1 cut(s)	1118
Bsp1286I	GDGCHC	2 cut(s)	8, 357
Bsp143I	GATC	9 cut(s)	157, 900, 912, 931, 1216, 1323, 1862, 1920, 1991
Bsp19I	CCATGG	1 cut(s)	636
BspACI	CCGC	2 cut(s)	981, 1379
BspANI	GGCC	6 cut(s)	462, 627, 683, 1243, 1957, 2019
BspCNI	CTCAG	6 cut(s)	694, 933, 961, 1192, 1424, 1864
BspLI	GGNNCC	2 cut(s)	938, 1100
BspMAI	CTGCAG	1 cut(s)	1482
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	4 cut(s)	895, 920, 1224, 1999
BspQI	GCTCTTC	1 cut(s)	568
BspT104I	TTCGAA	1 cut(s)	1118
BspT107I	GGYRCC	2 cut(s)	936, 1098
BspTNI	GGTCTC	4 cut(s)	109, 399, 1182, 1976
BsrDI	GCAATG	4 cut(s)	201, 354, 780, 1100
BsrFI	RCCGGY	1 cut(s)	878
BsrI	ACTGG	7 cut(s)	336, 452, 1584, 1723, 1794, 2061, 2108
BssAI	RCCGGY	1 cut(s)	878
BssECI	CCNNGG	6 cut(s)	636, 661, 908, 1030, 1506, 2021
BssMI	GATC	9 cut(s)	157, 900, 912, 931, 1216, 1323, 1862, 1920, 1991
BssNI	GRCGYC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	795
BssT1I	CCWWGG	4 cut(s)	636, 661, 1030, 2021
Bst2BI	CACGAG	1 cut(s)	795
Bst2UI	CCWGG	4 cut(s)	112, 459, 909, 1507
Bst4CI	ACNGT	4 cut(s)	954, 1111, 1150, 2050
Bst6I	CTCTTC	4 cut(s)	236, 545, 568, 926
BstACI	GRCGYC	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	868
BstBI	TTCGAA	1 cut(s)	1118
BstC8I	GCNNGC	3 cut(s)	295, 876, 985
BstDEI	CTNAG	8 cut(s)	702, 941, 969, 1179, 1271, 1411, 1851, 1964
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	3 cut(s)	68, 1643, 2057
BstKTI	GATC	9 cut(s)	160, 903, 915, 934, 1219, 1326, 1865, 1923, 1994
BstMAI	GTCTC	8 cut(s)	109, 399, 1182, 1505, 1741, 1795, 1813, 1976
BstMBI	GATC	9 cut(s)	157, 900, 912, 931, 1216, 1323, 1862, 1920, 1991
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	4 cut(s)	112, 459, 909, 1507
BstNSI	RCATGY	2 cut(s)	416, 1762
BstSCI	CCNGG	4 cut(s)	110, 457, 907, 1505
BstSFI	CTRYAG	1 cut(s)	1478
BstSNI	TACGTA	1 cut(s)	868
BstV1I	GCAGC	5 cut(s)	162, 218, 637, 1464, 1799
BstV2I	GAAGAC	2 cut(s)	853, 1795
BstX2I	RGATCY	2 cut(s)	912, 1991
BstXI	CCANNNNNNTGG	1 cut(s)	1597
BstYI	RGATCY	2 cut(s)	912, 1991
Bsu36I	CCTNAGG	1 cut(s)	1964
BsuRI	GGCC	6 cut(s)	462, 627, 683, 1243, 1957, 2019
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	3 cut(s)	68, 1643, 2057
BtsI	GCAGTG	2 cut(s)	774, 1312
BtsIMutI	CAGTG	7 cut(s)	329, 774, 1116, 1312, 1577, 1716, 1801
Cac8I	GCNNGC	3 cut(s)	295, 876, 985
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	4 cut(s)	681, 1241, 1250, 2018
CseI	GACGC	1 cut(s)	1099
Csp6I	GTAC	6 cut(s)	499, 610, 869, 897, 937, 1756
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	9 cut(s)	413, 637, 728, 1129, 1373, 1426, 1733, 1759, 2036
CviQI	GTAC	6 cut(s)	499, 610, 869, 897, 937, 1756
DdeI	CTNAG	8 cut(s)	702, 941, 969, 1179, 1271, 1411, 1851, 1964
DpnI	GATC	9 cut(s)	159, 902, 914, 933, 1218, 1325, 1864, 1922, 1993
DpnII	GATC	9 cut(s)	157, 900, 912, 931, 1216, 1323, 1862, 1920, 1991
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	4 cut(s)	236, 545, 568, 926
EarI	CTCTTC	4 cut(s)	236, 545, 568, 926
EciI	GGCGGA	1 cut(s)	1368
Ecl136II	GAGCTC	1 cut(s)	355
Eco105I	TACGTA	1 cut(s)	868
Eco130I	CCWWGG	4 cut(s)	636, 661, 1030, 2021
Eco147I	AGGCCT	2 cut(s)	462, 1957
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	4 cut(s)	109, 399, 1182, 1976
Eco32I	GATATC	1 cut(s)	1882
Eco47I	GGWCC	1 cut(s)	1250
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	260, 877
Eco81I	CCTNAGG	1 cut(s)	1964
Eco88I	CYCGRG	2 cut(s)	555, 1935
EcoICRI	GAGCTC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	1241
EcoRII	CCWGG	4 cut(s)	110, 457, 907, 1505
EcoRV	GATATC	1 cut(s)	1882
EcoT14I	CCWWGG	4 cut(s)	636, 661, 1030, 2021
EcoT22I	ATGCAT	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	4 cut(s)	636, 661, 1030, 2021
FaeI	CATG	9 cut(s)	416, 640, 731, 1132, 1376, 1429, 1736, 1762, 2039
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	2 cut(s)	178, 1900
FatI	CATG	9 cut(s)	412, 636, 727, 1128, 1372, 1425, 1732, 1758, 2035
FauNDI	CATATG	1 cut(s)	524
Fnu4HI	GCNGC	5 cut(s)	176, 207, 651, 1478, 1813
FokI	GGATG	3 cut(s)	75, 1630, 2044
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	176, 207, 651, 1478, 1813
FspBI	CTAG	9 cut(s)	50, 294, 662, 710, 786, 1053, 1166, 1604, 1953
GluI	GCNGC	5 cut(s)	176, 207, 651, 1478, 1813
GsaI	CCCAGC	2 cut(s)	747, 1477
GsuI	CTGGAG	2 cut(s)	133, 1777
HaeIII	GGCC	6 cut(s)	462, 627, 683, 1243, 1957, 2019
HapII	CCGG	3 cut(s)	311, 516, 879
HgaI	GACGC	1 cut(s)	1099
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	9 cut(s)	416, 640, 731, 1132, 1376, 1429, 1736, 1762, 2039
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	4 cut(s)	286, 482, 1494, 1544
HinfI	GANTC	7 cut(s)	107, 596, 724, 1162, 1535, 1583, 2087
HpaI	GTTAAC	1 cut(s)	513
HpaII	CCGG	3 cut(s)	311, 516, 879
HphI	GGTGA	6 cut(s)	793, 893, 1300, 1414, 1578, 1733
Hpy166II	GTNNAC	2 cut(s)	513, 1724
Hpy188I	TCNGA	9 cut(s)	155, 192, 595, 1182, 1320, 1337, 1534, 1854, 1996
Hpy188III	TCNNGA	3 cut(s)	238, 1037, 1405
Hpy8I	GTNNAC	2 cut(s)	513, 1724
Hpy99I	CGWCG	1 cut(s)	309
HpyAV	CCTTC	6 cut(s)	914, 1232, 1411, 1470, 1750, 1832
HpyCH4III	ACNGT	4 cut(s)	954, 1111, 1150, 2050
HpyCH4IV	ACGT	4 cut(s)	307, 738, 867, 964
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	8 cut(s)	702, 941, 969, 1179, 1271, 1411, 1851, 1964
HpySE526I	ACGT	4 cut(s)	307, 738, 867, 964
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	9 cut(s)	416, 640, 731, 1132, 1376, 1429, 1736, 1762, 2039
KpnI	GGTACC	1 cut(s)	940
KspAI	GTTAAC	1 cut(s)	513
Kzo9I	GATC	9 cut(s)	157, 900, 912, 931, 1216, 1323, 1862, 1920, 1991
LguI	GCTCTTC	1 cut(s)	568
LmnI	GCTCC	2 cut(s)	352, 717
Lsp1109I	GCAGC	5 cut(s)	162, 218, 637, 1464, 1799
LweI	GCATC	2 cut(s)	696, 1065
MaeI	CTAG	9 cut(s)	50, 294, 662, 710, 786, 1053, 1166, 1604, 1953
MaeII	ACGT	4 cut(s)	307, 738, 867, 964
MaeIII	GTNAC	7 cut(s)	340, 550, 781, 972, 1111, 1453, 1501
MalI	GATC	9 cut(s)	159, 902, 914, 933, 1218, 1325, 1864, 1922, 1993
MboI	GATC	9 cut(s)	157, 900, 912, 931, 1216, 1323, 1862, 1920, 1991
MfeI	CAATTG	1 cut(s)	1704
MflI	RGATCY	2 cut(s)	912, 1991
MhlI	GDGCHC	2 cut(s)	8, 357
MlyI	GAGTC	6 cut(s)	605, 718, 1171, 1529, 1577, 2096
MmeI	TCCRAC	2 cut(s)	40, 1959
Mph1103I	ATGCAT	1 cut(s)	444
MseI	TTAA	5 cut(s)	512, 587, 1158, 1566, 2100
MslI	CAYNNNNRTG	3 cut(s)	368, 879, 1731
MspA1I	CMGCKG	2 cut(s)	1415, 1477
MspI	CCGG	3 cut(s)	311, 516, 879
MspR9I	CCNGG	4 cut(s)	112, 459, 909, 1507
MunI	CAATTG	1 cut(s)	1704
Mva1269I	GAATGC	2 cut(s)	789, 1861
MvaI	CCWGG	4 cut(s)	112, 459, 909, 1507
MwoI	GCNNNNNNNGC	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	636
NdeI	CATATG	1 cut(s)	524
NdeII	GATC	9 cut(s)	157, 900, 912, 931, 1216, 1323, 1862, 1920, 1991
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	9 cut(s)	416, 640, 731, 1132, 1376, 1429, 1736, 1762, 2039
NlaIV	GGNNCC	2 cut(s)	938, 1100
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	5 cut(s)	340, 781, 1111, 1453, 1501
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	2 cut(s)	416, 1762
NspV	TTCGAA	1 cut(s)	1118
OliI	CACNNNNGTG	1 cut(s)	879
PaeR7I	CTCGAG	1 cut(s)	555
PceI	AGGCCT	2 cut(s)	462, 1957
PciI	ACATGT	2 cut(s)	412, 1758
PciSI	GCTCTTC	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	2 cut(s)	802, 864
PctI	GAATGC	2 cut(s)	789, 1861
PfeI	GAWTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	1036
PfoI	TCCNGGA	1 cut(s)	110
PkrI	GCNGC	5 cut(s)	177, 208, 652, 1479, 1814
PleI	GAGTC	6 cut(s)	604, 718, 1170, 1529, 1577, 2095
PpsI	GAGTC	6 cut(s)	604, 718, 1170, 1529, 1577, 2095
Ppu21I	YACGTR	1 cut(s)	868
PscI	ACATGT	2 cut(s)	412, 1758
PsiI	TTATAA	1 cut(s)	1044
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	4 cut(s)	110, 457, 907, 1505
PspFI	CCCAGC	2 cut(s)	743, 1473
PspGI	CCWGG	4 cut(s)	110, 457, 907, 1505
PspN4I	GGNNCC	2 cut(s)	938, 1100
PspPI	GGNCC	4 cut(s)	681, 1241, 1250, 2018
PspXI	VCTCGAGB	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	1482
PsuI	RGATCY	2 cut(s)	912, 1991
PvuII	CAGCTG	2 cut(s)	1415, 1477
RsaI	GTAC	6 cut(s)	500, 611, 870, 898, 938, 1757
RsaNI	GTAC	6 cut(s)	499, 610, 869, 897, 937, 1756
RseI	CAYNNNNRTG	3 cut(s)	368, 879, 1731
SacI	GAGCTC	1 cut(s)	357
SapI	GCTCTTC	1 cut(s)	568
SaqAI	TTAA	5 cut(s)	512, 587, 1158, 1566, 2100
SatI	GCNGC	5 cut(s)	176, 207, 651, 1478, 1813
Sau3AI	GATC	9 cut(s)	157, 900, 912, 931, 1216, 1323, 1862, 1920, 1991
Sau96I	GGNCC	4 cut(s)	681, 1241, 1250, 2018
SchI	GAGTC	6 cut(s)	605, 718, 1171, 1529, 1577, 2096
ScrFI	CCNGG	4 cut(s)	112, 459, 909, 1507
SduI	GDGCHC	2 cut(s)	8, 357
SfaNI	GCATC	2 cut(s)	696, 1065
SfcI	CTRYAG	1 cut(s)	1478
Sfr274I	CTCGAG	1 cut(s)	555
SfuI	TTCGAA	1 cut(s)	1118
SgrAI	CRCCGGYG	1 cut(s)	878
SinI	GGWCC	1 cut(s)	1250
SlaI	CTCGAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	3 cut(s)	368, 879, 1731
SmlI	CTYRAG	3 cut(s)	555, 1541, 1926
SmoI	CTYRAG	3 cut(s)	555, 1541, 1926
SnaBI	TACGTA	1 cut(s)	868
SseBI	AGGCCT	2 cut(s)	462, 1957
SsiI	CCGC	2 cut(s)	981, 1379
SspMI	CTAG	9 cut(s)	50, 294, 662, 710, 786, 1053, 1166, 1604, 1953
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	2 cut(s)	462, 1957
StyD4I	CCNGG	4 cut(s)	110, 457, 907, 1505
StyI	CCWWGG	4 cut(s)	636, 661, 1030, 2021
TaaI	ACNGT	4 cut(s)	954, 1111, 1150, 2050
TaiI	ACGT	4 cut(s)	310, 741, 870, 967
TaqI	TCGA	6 cut(s)	269, 556, 566, 599, 1118, 1884
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	5 cut(s)	512, 587, 1158, 1566, 2100
Tru9I	TTAA	5 cut(s)	512, 587, 1158, 1566, 2100
TscAI	CASTG	7 cut(s)	336, 774, 1116, 1312, 1584, 1723, 1801
TseFI	GTSAC	5 cut(s)	340, 781, 1111, 1453, 1501
TseI	GCWGC	5 cut(s)	175, 206, 650, 1477, 1812
Tsp45I	GTSAC	5 cut(s)	340, 781, 1111, 1453, 1501
TspDTI	ATGAA	8 cut(s)	28, 190, 913, 1248, 1732, 1774, 1795, 2046
TspRI	CASTG	7 cut(s)	336, 774, 1116, 1312, 1584, 1723, 1801
Van91I	CCANNNNNTGG	1 cut(s)	1036
VpaK11BI	GGWCC	1 cut(s)	1250
XapI	RAATTY	2 cut(s)	148, 1971
XceI	RCATGY	2 cut(s)	416, 1762
XhoI	CTCGAG	1 cut(s)	555
XmaJI	CCTAGG	1 cut(s)	661
XspI	CTAG	9 cut(s)	50, 294, 662, 710, 786, 1053, 1166, 1604, 1953
ZraI	GACGTC	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.