Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001465.1

Orthogroup ID

OG0001860

Physical Location & Seq

Genomic Coordinates Forward (+)

25794 .. 31973

Gene Structure 6180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001465.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3000 bp

atgagcacaaatacagcagtagtatcagttatcaggttcatattgcttctagtgtttgttggatggctcatcatttggattgtgttgccaaccgaaacttacagagattcctggagaccctacctccaaggcaaactcaactcaacatatttcggagatcaagggacaaatctgctgcttttctcgttcccgatgatgttcatagcagctttgagttgtgtttatctccatctaatccgaaagaggaaatcaaacaagtcatcatactcgacatactactccacaagctttgctagctactggagacgtccggcgagtgtgaaatctccactgggaattgtgaccgcaatggagctcggtttcacaataatgtttattgcactctttgtgtggtctcttaccaattacatacatgtcggcttcgcccacctccataatatgcatacgaaaccagttccaggcctgaaagagtgggaagcaaagcttcgtagcgtgtcgtacagacttgggttaaccggaaacatatgtctggcatttctcttcttccctgtaactcgaggctcttcgattttggctctggttggcttaacatcggagtcgagtatcaagtaccatgtttggctcggccatctctccatggttctatttgctgctcattccctaggctacatcatcttctgggccatcactaatcaaatggctgagatgctagaatggagcaagactcatgtatcaaacgtagctggggagattgctattctatttgcaatggcaatgtgggtgactagcattcctcgtgttagacgaaaaatgtttgaattatttttctatacccaccagctctacgttctctacatcgtcttctacgtactgcacgccggtgctaatttcttctgtacgatccttcctgggatcttcctcttcatcatagatcggtacctgagatttttacagtctaatcaacgcgctgagttactctccgcacgcattttaccttgtgagaccattgaactgaacttctccaagatccaaggtctggattataatcccactagcatcttgtttatcaatgtgcctagtgtatccaagatgcagtggcacccgtttacagtgaattcgaactctaacatggaggcagacaagttaagtgttgtgattaagagtctcggaagttggtctcagaaactttaccagcaactttcttctaattctatggatcatattcaagtttctgttgaagggccttatggacctaattcaactcattttctaaggcacaaagctctggtgatgattagtggaggcagtggaattactccgatgatctccataatccgagaaatcattttccaaagcaccaaaccggactgccatgttccgcctgttcggttgatatgtgccttcaagaactcagctgatctcaccatgctacaactcttgcttccaatttctgtcacaccttcaaattttacccagctgcagtttcaaattgaagcttatgtgaccagggagacacagaagctgcctccatcagactccctcaagcttctccaaaccctatggtttaagccagacccactggactcacccatttctttggttctaggacaaaacacttggctatggcttggtgctataatctcatcctcatttgtcttatttctctttgttttgggcattgtcaatcgtttctatatatacccaatcgaccacaacactggtgaacactaccatgtctccttcatttgcctgtggtacatgtttttgatctgtgcctccattttcatagtctctagtgcagtcttcatttggtgcaagagacagaacgccatcgaagatgcgaagcaaactcagaatgcgaaattatcaacaccaacaactgatatcgaacttgcgagttctccccataatcatgagtccctgattgctcaagctacccaagtgcattatggaactaggcctaacctgaagaaaattctgttggagaccaaaggatctgatattggagtgttggtttgtggcccaaggaagatgaggcatgaggttgccacagtctgttcatccagtttggcacataatctgcactttgagcacgatacactagtgatggtgagtggaggaagcggcattactccattgatatccataatccgtgagctcctatctcaagccaatgactcagaaaagaagactccacaagttctgctcataactgccttcaaaaaatcactagacctcactatgttagacctcatcctcccagcttcgggcacaaatttggacatttcttgcttgcaattacagattgaagcttacgtgacgagagagaaccaacccgtaacacataaccacaagcctctgcaaacaatatggttcaacccagacccattggactcaccagtttctgcagtattaggccgaaacagttggctttggcttggagtgatcatagcaacctccttcgtcattttcctcgtgctaatgggaatcctcacacgatattacatataccccattgaccataactctaatatgatatactctgcctcttatagatctgccttaaacatgttattgctatgtgtttccatagccacaactgcaactgcagttttcctatggaataagaaacaaaattcaaaggagatgggacatattcaagccatagacacaccaccacagattactacttcaccaagcgctcggttttacaatgctggtcaagaacttgaaagtcttccccaccagtcctttgtccaatcgacaaaggtgcactatggcacaaggccggatcttcaaagtaagtttattcacagaaatacccgaaaacttgattgtttcaaagctcaggggcaaagggggatattatcgggctgcgaaggatcaagcgttggggttcttgttagcggaccaagcaagatgaggcaagaagtggcggcgatatgttcattgccattggcccacaacctacattaccattccatgagcttcagctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

999

Amino Acids

112.67

Weight (kDa)

9.15

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23980 AT5G23990 AT5G23990 AT5G23990
fragaria_vesca	FvH4_7g30120 FvH4_7g30120 FvH4_7g30141
malus_domestica	MD01G1207200.v1.1 MD07G1278100.v1.1
prunus_persica	Prupe.2G299900_v2.0.a1
pyrus_communis	pycom07g25310
rosa_chinensis	RchiOBHm_Chr1g0378121 RchiOBHm_Chr1g0378131 RchiOBHm_Chr1g0378151 RchiOBHm_Chr1g0378171
rosa_laevigata	RLG00000026465 RLG00000026467 RLG00000026469 RLG00000026470
rosa_multiflora	Rmu_sc0000625.1_g000007 Rmu_sc0000625.1_g000009 Rmu_sc0001465.1_g000007 Rmu_sc0001465.1_g000010
rosa_roxburghii	Rroxscaffold_156G00440270 Rroxscaffold_4G00280700 Rroxscaffold_4G00280710 Rroxscaffold_4G00280730 Rroxscaffold_4G00280760
rosa_rugosa	Rorug01G0406500 Rorug01G0406700
rosa_samantha	Rh1AG423000 Rh1AG423100 Rh1AG423300 Rh1BG385300 Rh1BG385500 Rh1BG385800 Rh1CG399300 Rh1CG399500 Rh1CG399600 Rh1DG416500 Rh1DG416700 Rh1DG416900
rosa_wichuraiana	Rw1G037390 Rw1G037400 Rw1G037420 Rw1G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1044
AatII	GACGTC	1 cut(s)	310
Acc65I	GGTACC	1 cut(s)	936
AccB1I	GGYRCC	2 cut(s)	936, 1098
AccB7I	CCANNNNNTGG	1 cut(s)	1036
AccII	CGCG	1 cut(s)	966
AciI	CCGC	6 cut(s)	345, 981, 1379, 2124, 2907, 2936
AclWI	GGATC	7 cut(s)	895, 920, 1021, 1224, 2002, 2799, 2890
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	5 cut(s)	1114, 1465, 1974, 2275, 2635
AcuI	CTGAAG	2 cut(s)	1988, 2974
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	6 cut(s)	500, 611, 870, 898, 938, 1757
AfeI	AGCGCT	1 cut(s)	2701
AfiI	CCNNNNNNNGG	4 cut(s)	458, 1036, 2266, 2267
AflIII	ACRYGT	3 cut(s)	412, 1758, 2568
AhlI	ACTAGT	1 cut(s)	2101
AjnI	CCWGG	4 cut(s)	110, 457, 907, 1505
AjuI	GAANNNNNNNTTGG	2 cut(s)	1964, 1996
AleI	CACNNNNGTG	1 cut(s)	879
Alw21I	GWGCWC	5 cut(s)	8, 357, 2094, 2160, 2775
Alw44I	GTGCAC	1 cut(s)	2771
AlwI	GGATC	7 cut(s)	895, 920, 1021, 1224, 2002, 2799, 2890
AlwNI	CAGNNNCTG	2 cut(s)	1522, 2405
Ama87I	CYCGRG	1 cut(s)	555
Aor51HI	AGCGCT	1 cut(s)	2701
AoxI	GGCC	9 cut(s)	460, 625, 681, 1241, 1958, 2020, 2416, 2786, 2958
ApaLI	GTGCAC	1 cut(s)	2771
ApeKI	GCWGC	6 cut(s)	175, 206, 650, 1477, 1522, 2874
ApoI	RAATTY	5 cut(s)	1114, 1465, 1974, 2275, 2635
Asp700I	GAANNNNTTC	1 cut(s)	2736
Asp718I	GGTACC	1 cut(s)	936
AspA2I	CCTAGG	1 cut(s)	661
AspLEI	GCGC	2 cut(s)	968, 2702
AspS9I	GGNCC	6 cut(s)	681, 1241, 1250, 2021, 2909, 2959
AsuHPI	GGTGA	8 cut(s)	793, 1300, 1414, 1578, 1733, 2122, 2388, 2685
AsuII	TTCGAA	1 cut(s)	1118
AsuNHI	GCTAGC	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	555
AvaII	GGWCC	2 cut(s)	1250, 2909
AvrII	CCTAGG	1 cut(s)	661
BaeGI	GKGCMC	2 cut(s)	2273, 2775
BaeI	ACNNNNGTAYC	4 cut(s)	714, 747, 2088, 2121
BanI	GGYRCC	2 cut(s)	936, 1098
BanII	GRGCYC	2 cut(s)	357, 2160
BarI	GAAGNNNNNNTAC	2 cut(s)	2113, 2145
BauI	CACGAG	2 cut(s)	795, 2474
BbsI	GAAGAC	4 cut(s)	853, 1795, 2195, 2729
Bbv12I	GWGCWC	5 cut(s)	8, 357, 2094, 2160, 2775
BbvI	GCAGC	6 cut(s)	162, 218, 637, 1464, 1509, 2861
BccI	CCATC	8 cut(s)	57, 237, 636, 692, 1537, 1838, 2101, 2641
BcgI	CGANNNNNNTGC	2 cut(s)	2752, 2786
BciT130I	CCWGG	4 cut(s)	112, 459, 909, 1507
BciVI	GTATCC	1 cut(s)	1093
BclI	TGATCA	1 cut(s)	2445
BcuI	ACTAGT	1 cut(s)	2101
BfmI	CTRYAG	3 cut(s)	1478, 2406, 2607
BfoI	RGCGCY	1 cut(s)	2703
BfuI	GTATCC	1 cut(s)	1093
BglII	AGATCT	1 cut(s)	2555
BisI	GCNGC	8 cut(s)	176, 207, 651, 1478, 1523, 2125, 2875, 2937
BlnI	CCTAGG	1 cut(s)	661
BlsI	GCNGC	8 cut(s)	177, 208, 652, 1479, 1524, 2126, 2876, 2938
Bme1390I	CCNGG	4 cut(s)	112, 459, 909, 1507
Bme18I	GGWCC	2 cut(s)	1250, 2909
BmeT110I	CYCGRG	1 cut(s)	555
BmgT120I	GGNCC	6 cut(s)	681, 1241, 1250, 2021, 2909, 2959
BmiI	GGNNCC	2 cut(s)	938, 1100
BmrFI	CCNGG	4 cut(s)	112, 459, 909, 1507
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	4 cut(s)	696, 1065, 1080, 1828
BmtI	GCTAGC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	4 cut(s)	853, 1795, 2195, 2729
BplI	GAGNNNNNCTC	4 cut(s)	709, 741, 962, 994
BpmI	CTGGAG	2 cut(s)	133, 322
Bpu10I	CCTNAGC	1 cut(s)	2847
Bpu14I	TTCGAA	1 cut(s)	1118
BpuEI	CTTGAG	3 cut(s)	1526, 1914, 2151
BsaAI	YACGTR	2 cut(s)	868, 2317
BsaBI	GATNNNNATC	1 cut(s)	1044
BsaHI	GRCGYC	1 cut(s)	307
BsaI	GGTCTC	5 cut(s)	109, 399, 995, 1182, 1979
BsaJI	CCNNGG	7 cut(s)	127, 636, 661, 908, 1030, 1506, 2024
BsaWI	WCCGGW	2 cut(s)	515, 1363
BsaXI	ACNNNNNCTCC	6 cut(s)	108, 138, 1721, 1751, 1998, 2028
Bsc4I	CCNNNNNNNGG	4 cut(s)	458, 1036, 2266, 2267
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	8 cut(s)	305, 336, 452, 1584, 1723, 2064, 2399, 2746
Bse3DI	GCAATG	4 cut(s)	354, 774, 780, 2948
Bse8I	GATNNNNATC	1 cut(s)	1044
BseBI	CCWGG	4 cut(s)	112, 459, 909, 1507
BseDI	CCNNGG	7 cut(s)	127, 636, 661, 908, 1030, 1506, 2024
BseGI	GGATG	4 cut(s)	68, 1643, 2060, 2253
BseJI	GATNNNNATC	1 cut(s)	1044
BseLI	CCNNNNNNNGG	4 cut(s)	458, 1036, 2266, 2267
BseMI	GCAATG	4 cut(s)	354, 774, 780, 2948
BseMII	CTCAG	8 cut(s)	693, 932, 960, 1193, 1425, 1865, 2193, 2861
BseNI	ACTGG	8 cut(s)	305, 336, 452, 1584, 1723, 2064, 2399, 2746
BseSI	GKGCMC	2 cut(s)	2273, 2775
BseXI	GCAGC	6 cut(s)	162, 218, 637, 1464, 1509, 2861
BseYI	CCCAGC	3 cut(s)	743, 1473, 2260
BsgI	GTGCAG	3 cut(s)	857, 1818, 2066
Bsh1236I	CGCG	1 cut(s)	966
BshFI	GGCC	9 cut(s)	462, 627, 683, 1243, 1960, 2022, 2418, 2788, 2960
BshNI	GGYRCC	2 cut(s)	936, 1098
BsiHKAI	GWGCWC	5 cut(s)	8, 357, 2094, 2160, 2775
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	5 cut(s)	311, 516, 879, 1364, 2789
BslFI	GGGAC	3 cut(s)	178, 1903, 2664
BslI	CCNNNNNNNGG	4 cut(s)	458, 1036, 2266, 2267
BsmBI	CGTCTC	1 cut(s)	298
BsmFI	GGGAC	3 cut(s)	178, 1903, 2664
BsmI	GAATGC	2 cut(s)	789, 1861
BsnI	GGCC	9 cut(s)	462, 627, 683, 1243, 1960, 2022, 2418, 2788, 2960
Bso31I	GGTCTC	5 cut(s)	109, 399, 995, 1182, 1979
BsoBI	CYCGRG	1 cut(s)	555
Bsp119I	TTCGAA	1 cut(s)	1118
Bsp1286I	GDGCHC	6 cut(s)	8, 357, 2094, 2160, 2273, 2775
Bsp19I	CCATGG	1 cut(s)	636
BspACI	CCGC	6 cut(s)	345, 981, 1379, 2124, 2907, 2936
BspANI	GGCC	9 cut(s)	462, 627, 683, 1243, 1960, 2022, 2418, 2788, 2960
BspCNI	CTCAG	8 cut(s)	694, 933, 961, 1192, 1424, 1864, 2192, 2860
BspFNI	CGCG	1 cut(s)	966
BspHI	TCATGA	1 cut(s)	1912
BspLI	GGNNCC	2 cut(s)	938, 1100
BspMAI	CTGCAG	3 cut(s)	1482, 2410, 2611
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	7 cut(s)	895, 920, 1021, 1224, 2002, 2799, 2890
BspQI	GCTCTTC	1 cut(s)	568
BspT104I	TTCGAA	1 cut(s)	1118
BspT107I	GGYRCC	2 cut(s)	936, 1098
BspTNI	GGTCTC	5 cut(s)	109, 399, 995, 1182, 1979
BsrDI	GCAATG	4 cut(s)	354, 774, 780, 2948
BsrFI	RCCGGY	1 cut(s)	878
BsrI	ACTGG	8 cut(s)	305, 336, 452, 1584, 1723, 2064, 2399, 2746
BssAI	RCCGGY	1 cut(s)	878
BssECI	CCNNGG	7 cut(s)	127, 636, 661, 908, 1030, 1506, 2024
BssNI	GRCGYC	1 cut(s)	307
BssSI	CACGAG	2 cut(s)	795, 2474
BssT1I	CCWWGG	5 cut(s)	127, 636, 661, 1030, 2024
Bst2BI	CACGAG	2 cut(s)	795, 2474
Bst2UI	CCWGG	4 cut(s)	112, 459, 909, 1507
Bst4CI	ACNGT	4 cut(s)	954, 1111, 2053, 2426
Bst6I	CTCTTC	3 cut(s)	545, 568, 926
BstACI	GRCGYC	1 cut(s)	307
BstBAI	YACGTR	2 cut(s)	868, 2317
BstBI	TTCGAA	1 cut(s)	1118
BstC8I	GCNNGC	4 cut(s)	295, 876, 985, 2294
BstDEI	CTNAG	9 cut(s)	702, 941, 969, 1179, 1271, 1411, 1851, 2179, 2847
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	4 cut(s)	68, 1643, 2060, 2253
BstFNI	CGCG	1 cut(s)	966
BstH2I	RGCGCY	1 cut(s)	2703
BstHHI	GCGC	2 cut(s)	968, 2702
BstMWI	GCNNNNNNNGC	4 cut(s)	294, 2089, 2600, 2913
BstNI	CCWGG	4 cut(s)	112, 459, 909, 1507
BstNSI	RCATGY	3 cut(s)	416, 1762, 2572
BstSCI	CCNGG	4 cut(s)	110, 457, 907, 1505
BstSFI	CTRYAG	3 cut(s)	1478, 2406, 2607
BstSLI	GKGCMC	2 cut(s)	2273, 2775
BstSNI	TACGTA	1 cut(s)	868
BstUI	CGCG	1 cut(s)	966
BstV1I	GCAGC	6 cut(s)	162, 218, 637, 1464, 1509, 2861
BstV2I	GAAGAC	4 cut(s)	853, 1795, 2195, 2729
BstX2I	RGATCY	5 cut(s)	912, 1026, 1994, 2555, 2791
BstXI	CCANNNNNNTGG	2 cut(s)	1597, 1718
BstYI	RGATCY	5 cut(s)	912, 1026, 1994, 2555, 2791
BsuI	GTATCC	1 cut(s)	1093
BsuRI	GGCC	9 cut(s)	462, 627, 683, 1243, 1960, 2022, 2418, 2788, 2960
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	4 cut(s)	68, 1643, 2060, 2253
BtsI	GCAGTG	2 cut(s)	1100, 1312
BtsIMutI	CAGTG	6 cut(s)	329, 1100, 1116, 1312, 1577, 1716
Cac8I	GCNNGC	4 cut(s)	295, 876, 985, 2294
CaiI	CAGNNNCTG	2 cut(s)	1522, 2405
CciI	TCATGA	1 cut(s)	1912
CfoI	GCGC	2 cut(s)	968, 2702
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	6 cut(s)	681, 1241, 1250, 2021, 2909, 2959
Csp6I	GTAC	6 cut(s)	499, 610, 869, 897, 937, 1756
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviQI	GTAC	6 cut(s)	499, 610, 869, 897, 937, 1756
DdeI	CTNAG	9 cut(s)	702, 941, 969, 1179, 1271, 1411, 1851, 2179, 2847
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	3 cut(s)	545, 568, 926
EarI	CTCTTC	3 cut(s)	545, 568, 926
EciI	GGCGGA	1 cut(s)	1368
Ecl136II	GAGCTC	2 cut(s)	355, 2158
Eco105I	TACGTA	1 cut(s)	868
Eco130I	CCWWGG	5 cut(s)	127, 636, 661, 1030, 2024
Eco147I	AGGCCT	2 cut(s)	462, 1960
Eco24I	GRGCYC	2 cut(s)	357, 2160
Eco31I	GGTCTC	5 cut(s)	109, 399, 995, 1182, 1979
Eco32I	GATATC	2 cut(s)	1885, 2142
Eco47I	GGWCC	2 cut(s)	1250, 2909
Eco47III	AGCGCT	1 cut(s)	2701
Eco53kI	GAGCTC	2 cut(s)	355, 2158
Eco57I	CTGAAG	2 cut(s)	1988, 2974
Eco88I	CYCGRG	1 cut(s)	555
EcoICRI	GAGCTC	2 cut(s)	355, 2158
EcoO109I	RGGNCCY	1 cut(s)	1241
EcoRI	GAATTC	1 cut(s)	1114
EcoRII	CCWGG	4 cut(s)	110, 457, 907, 1505
EcoRV	GATATC	2 cut(s)	1885, 2142
EcoT14I	CCWWGG	5 cut(s)	127, 636, 661, 1030, 2024
EcoT22I	ATGCAT	1 cut(s)	444
EcoT38I	GRGCYC	2 cut(s)	357, 2160
ErhI	CCWWGG	5 cut(s)	127, 636, 661, 1030, 2024
Esp3I	CGTCTC	1 cut(s)	298
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	3 cut(s)	178, 1903, 2664
FauNDI	CATATG	1 cut(s)	524
FbaI	TGATCA	1 cut(s)	2445
Fnu4HI	GCNGC	8 cut(s)	176, 207, 651, 1478, 1523, 2125, 2875, 2937
FokI	GGATG	4 cut(s)	75, 1630, 2047, 2240
FriOI	GRGCYC	2 cut(s)	357, 2160
Fsp4HI	GCNGC	8 cut(s)	176, 207, 651, 1478, 1523, 2125, 2875, 2937
GlaI	GCGC	2 cut(s)	967, 2701
GluI	GCNGC	8 cut(s)	176, 207, 651, 1478, 1523, 2125, 2875, 2937
GsaI	CCCAGC	3 cut(s)	747, 1477, 2264
GsuI	CTGGAG	2 cut(s)	133, 322
HaeII	RGCGCY	1 cut(s)	2703
HaeIII	GGCC	9 cut(s)	462, 627, 683, 1243, 1960, 2022, 2418, 2788, 2960
HapII	CCGG	5 cut(s)	311, 516, 879, 1364, 2789
HhaI	GCGC	2 cut(s)	968, 2702
Hin1I	GRCGYC	1 cut(s)	307
Hin6I	GCGC	2 cut(s)	966, 2700
HinP1I	GCGC	2 cut(s)	966, 2700
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	5 cut(s)	286, 482, 1494, 1544, 2310
HpaI	GTTAAC	1 cut(s)	513
HpaII	CCGG	5 cut(s)	311, 516, 879, 1364, 2789
HphI	GGTGA	8 cut(s)	793, 1300, 1414, 1578, 1733, 2122, 2388, 2685
Hpy166II	GTNNAC	4 cut(s)	513, 1107, 1724, 2773
Hpy188III	TCNNGA	5 cut(s)	190, 1037, 1405, 1913, 2723
Hpy8I	GTNNAC	4 cut(s)	513, 1107, 1724, 2773
HpyAV	CCTTC	8 cut(s)	914, 1232, 1411, 1470, 1750, 2227, 2470, 2873
HpyCH4III	ACNGT	4 cut(s)	954, 1111, 2053, 2426
HpyCH4IV	ACGT	5 cut(s)	307, 738, 846, 867, 2316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	294, 2089, 2600, 2913
HpyF3I	CTNAG	9 cut(s)	702, 941, 969, 1179, 1271, 1411, 1851, 2179, 2847
HpySE526I	ACGT	5 cut(s)	307, 738, 846, 867, 2316
Hsp92I	GRCGYC	1 cut(s)	307
HspAI	GCGC	2 cut(s)	966, 2700
KpnI	GGTACC	1 cut(s)	940
Ksp22I	TGATCA	1 cut(s)	2445
KspAI	GTTAAC	1 cut(s)	513
LguI	GCTCTTC	1 cut(s)	568
LmnI	GCTCC	3 cut(s)	352, 717, 2163
Lsp1109I	GCAGC	6 cut(s)	162, 218, 637, 1464, 1509, 2861
LweI	GCATC	4 cut(s)	696, 1065, 1080, 1828
MaeII	ACGT	5 cut(s)	307, 738, 846, 867, 2316
MaeIII	GTNAC	8 cut(s)	340, 550, 781, 972, 1453, 1501, 2317, 2338
MflI	RGATCY	5 cut(s)	912, 1026, 1994, 2555, 2791
MhlI	GDGCHC	6 cut(s)	8, 357, 2094, 2160, 2273, 2775
MlyI	GAGTC	9 cut(s)	605, 718, 1171, 1529, 1577, 1925, 2171, 2185, 2387
MmeI	TCCRAC	2 cut(s)	40, 1962
Mph1103I	ATGCAT	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	2736
MseI	TTAA	6 cut(s)	512, 587, 1145, 1158, 1566, 2564
MslI	CAYNNNNRTG	4 cut(s)	368, 879, 1731, 1911
MspA1I	CMGCKG	3 cut(s)	1415, 1477, 2994
MspI	CCGG	5 cut(s)	311, 516, 879, 1364, 2789
MspR9I	CCNGG	4 cut(s)	112, 459, 909, 1507
Mva1269I	GAATGC	2 cut(s)	789, 1861
MvaI	CCWGG	4 cut(s)	112, 459, 909, 1507
MvnI	CGCG	1 cut(s)	966
MwoI	GCNNNNNNNGC	4 cut(s)	294, 2089, 2600, 2913
NcoI	CCATGG	1 cut(s)	636
NdeI	CATATG	1 cut(s)	524
NheI	GCTAGC	1 cut(s)	293
NlaIV	GGNNCC	2 cut(s)	938, 1100
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	5 cut(s)	340, 781, 1453, 1501, 2317
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	3 cut(s)	416, 1762, 2572
NspV	TTCGAA	1 cut(s)	1118
OliI	CACNNNNGTG	1 cut(s)	879
PaeR7I	CTCGAG	1 cut(s)	555
PagI	TCATGA	1 cut(s)	1912
PceI	AGGCCT	2 cut(s)	462, 1960
PciI	ACATGT	3 cut(s)	412, 1758, 2568
PciSI	GCTCTTC	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	2 cut(s)	802, 864
PctI	GAATGC	2 cut(s)	789, 1861
PdmI	GAANNNNTTC	1 cut(s)	2736
PfeI	GAWTC	2 cut(s)	107, 2487
PflMI	CCANNNNNTGG	1 cut(s)	1036
PfoI	TCCNGGA	1 cut(s)	110
PkrI	GCNGC	8 cut(s)	177, 208, 652, 1479, 1524, 2126, 2876, 2938
PleI	GAGTC	9 cut(s)	604, 718, 1170, 1529, 1577, 1924, 2171, 2185, 2387
PpsI	GAGTC	9 cut(s)	604, 718, 1170, 1529, 1577, 1924, 2171, 2185, 2387
Ppu21I	YACGTR	2 cut(s)	868, 2317
PscI	ACATGT	3 cut(s)	412, 1758, 2568
PsiI	TTATAA	1 cut(s)	1044
Psp124BI	GAGCTC	2 cut(s)	357, 2160
Psp6I	CCWGG	4 cut(s)	110, 457, 907, 1505
PspFI	CCCAGC	3 cut(s)	743, 1473, 2260
PspGI	CCWGG	4 cut(s)	110, 457, 907, 1505
PspN4I	GGNNCC	2 cut(s)	938, 1100
PspPI	GGNCC	6 cut(s)	681, 1241, 1250, 2021, 2909, 2959
PspXI	VCTCGAGB	1 cut(s)	555
PstI	CTGCAG	3 cut(s)	1482, 2410, 2611
PstNI	CAGNNNCTG	2 cut(s)	1522, 2405
PsuI	RGATCY	5 cut(s)	912, 1026, 1994, 2555, 2791
PvuII	CAGCTG	3 cut(s)	1415, 1477, 2994
RsaI	GTAC	6 cut(s)	500, 611, 870, 898, 938, 1757
RsaNI	GTAC	6 cut(s)	499, 610, 869, 897, 937, 1756
RseI	CAYNNNNRTG	4 cut(s)	368, 879, 1731, 1911
SacI	GAGCTC	2 cut(s)	357, 2160
SapI	GCTCTTC	1 cut(s)	568
SaqAI	TTAA	6 cut(s)	512, 587, 1145, 1158, 1566, 2564
SatI	GCNGC	8 cut(s)	176, 207, 651, 1478, 1523, 2125, 2875, 2937
Sau96I	GGNCC	6 cut(s)	681, 1241, 1250, 2021, 2909, 2959
SchI	GAGTC	9 cut(s)	605, 718, 1171, 1529, 1577, 1925, 2171, 2185, 2387
ScrFI	CCNGG	4 cut(s)	112, 459, 909, 1507
SduI	GDGCHC	6 cut(s)	8, 357, 2094, 2160, 2273, 2775
SfaNI	GCATC	4 cut(s)	696, 1065, 1080, 1828
SfcI	CTRYAG	3 cut(s)	1478, 2406, 2607
Sfr274I	CTCGAG	1 cut(s)	555
SfuI	TTCGAA	1 cut(s)	1118
SgrAI	CRCCGGYG	1 cut(s)	878
SinI	GGWCC	2 cut(s)	1250, 2909
SlaI	CTCGAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	4 cut(s)	368, 879, 1731, 1911
SmlI	CTYRAG	4 cut(s)	555, 1541, 1929, 2166
SmoI	CTYRAG	4 cut(s)	555, 1541, 1929, 2166
SnaBI	TACGTA	1 cut(s)	868
SpeI	ACTAGT	1 cut(s)	2101
SseBI	AGGCCT	2 cut(s)	462, 1960
SsiI	CCGC	6 cut(s)	345, 981, 1379, 2124, 2907, 2936
SstI	GAGCTC	2 cut(s)	357, 2160
StuI	AGGCCT	2 cut(s)	462, 1960
StyD4I	CCNGG	4 cut(s)	110, 457, 907, 1505
StyI	CCWWGG	5 cut(s)	127, 636, 661, 1030, 2024
TaaI	ACNGT	4 cut(s)	954, 1111, 2053, 2426
TaiI	ACGT	5 cut(s)	310, 741, 849, 870, 2319
TaqI	TCGA	9 cut(s)	269, 556, 566, 599, 1118, 1707, 1833, 1887, 2762
TauI	GCSGC	2 cut(s)	2127, 2939
TfiI	GAWTC	2 cut(s)	107, 2487
Tru1I	TTAA	6 cut(s)	512, 587, 1145, 1158, 1566, 2564
Tru9I	TTAA	6 cut(s)	512, 587, 1145, 1158, 1566, 2564
TscAI	CASTG	6 cut(s)	336, 1100, 1116, 1312, 1584, 1723
TseFI	GTSAC	5 cut(s)	340, 781, 1453, 1501, 2317
TseI	GCWGC	6 cut(s)	175, 206, 650, 1477, 1522, 2874
Tsp45I	GTSAC	5 cut(s)	340, 781, 1453, 1501, 2317
TspDTI	ATGAA	8 cut(s)	28, 190, 913, 1732, 1774, 1795, 2049, 2937
TspGWI	ACGGA	1 cut(s)	2141
TspRI	CASTG	6 cut(s)	336, 1100, 1116, 1312, 1584, 1723
Van91I	CCANNNNNTGG	1 cut(s)	1036
VneI	GTGCAC	1 cut(s)	2771
VpaK11BI	GGWCC	2 cut(s)	1250, 2909
XapI	RAATTY	5 cut(s)	1114, 1465, 1974, 2275, 2635
XceI	RCATGY	3 cut(s)	416, 1762, 2572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1946
XhoI	CTCGAG	1 cut(s)	555
XmaJI	CCTAGG	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	2736
ZraI	GACGTC	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.