Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001465.1

Orthogroup ID

OG0001860

Physical Location & Seq

Genomic Coordinates Forward (+)

21021 .. 22192

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001465.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgattagtggaggcagtggaattacaccgatgatctccataatccgagaaatcattttccaaagcaccaaaccagactgccatgttccgcctgttcggttgatatgtgccttcaagaactcagctgatctcaccatgctacaactcttgcttccaatttctgtcacaccttctaattttacccagctgcagtttcaaattgaagcatatgtgaccagggagacacacaagcagcctccaccagaaccccacaagtctctccaaaccttatggtttaagccaaaccaactgaactcacccatttctttggttctaggacaaaacacttggctatggcttggtgctataatctcatcctcatttgtcttatttctctttgttttgggcattgtcaatcgtttctatatatacccaatcgaccacaacactggtgaacactaccatgtctccttcatttgcctgtgtgcagtctacatttggtgcaagagacagaacgccatcgaagatgcgaagcaaactcagaatgcgaaattatcaacaccaacaactgatatcgaacttgcgagttctccccataatcatgagtccctgatcgctcaagctacccaagtgcattatggaactaggcctgacctgaagaaaattctgttattggaaaccaaaggatctgatattggagtgttggttagtggcccaaggaagttgagacatgaggttgccacagtctgttcatccagtttggcacataatctgcactttgagtccattagctttaactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

260

Amino Acids

29.21

Weight (kDa)

8.21

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23980 AT5G23990 AT5G23990 AT5G23990
fragaria_vesca	FvH4_7g30120 FvH4_7g30120 FvH4_7g30141
malus_domestica	MD01G1207200.v1.1 MD07G1278100.v1.1
prunus_persica	Prupe.2G299900_v2.0.a1
pyrus_communis	pycom07g25310
rosa_chinensis	RchiOBHm_Chr1g0378121 RchiOBHm_Chr1g0378131 RchiOBHm_Chr1g0378151 RchiOBHm_Chr1g0378171
rosa_laevigata	RLG00000026465 RLG00000026467 RLG00000026469 RLG00000026470
rosa_multiflora	Rmu_sc0000625.1_g000007 Rmu_sc0000625.1_g000009 Rmu_sc0001465.1_g000007 Rmu_sc0001465.1_g000010
rosa_roxburghii	Rroxscaffold_156G00440270 Rroxscaffold_4G00280700 Rroxscaffold_4G00280710 Rroxscaffold_4G00280730 Rroxscaffold_4G00280760
rosa_rugosa	Rorug01G0406500 Rorug01G0406700
rosa_samantha	Rh1AG423000 Rh1AG423100 Rh1AG423300 Rh1BG385300 Rh1BG385500 Rh1BG385800 Rh1CG399300 Rh1CG399500 Rh1CG399600 Rh1DG416500 Rh1DG416700 Rh1DG416900
rosa_wichuraiana	Rw1G037390 Rw1G037400 Rw1G037420 Rw1G037430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	673
AcsI	RAATTY	1 cut(s)	642
AcuI	CTGAAG	1 cut(s)	656
AgsI	TTSAA	3 cut(s)	115, 197, 203
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	4 cut(s)	125, 187, 602, 771
AluI	AGCT	4 cut(s)	125, 187, 602, 771
Alw26I	GTCTC	5 cut(s)	215, 261, 451, 481, 700
AlwI	GGATC	1 cut(s)	673
AoxI	GGCC	2 cut(s)	626, 691
ApeKI	GCWGC	2 cut(s)	187, 232
ApoI	RAATTY	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	3 cut(s)	124, 288, 443
BbvI	GCAGC	2 cut(s)	174, 244
BccI	CCATC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	5 cut(s)	215, 261, 451, 481, 700
BfaI	CTAG	2 cut(s)	314, 624
BfmI	CTRYAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	188, 233
BlsI	GCNGC	2 cut(s)	189, 234
Bme1390I	CCNGG	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	692
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	496
BpuEI	CTTGAG	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	216, 695
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 669, 699
Bse1I	ACTGG	3 cut(s)	433, 735, 782
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	2 cut(s)	216, 695
BseGI	GGATG	2 cut(s)	353, 731
BseMII	CTCAG	2 cut(s)	135, 533
BseNI	ACTGG	3 cut(s)	433, 735, 782
BseXI	GCAGC	2 cut(s)	174, 244
BseYI	CCCAGC	1 cut(s)	183
BsgI	GTGCAG	2 cut(s)	486, 737
BshFI	GGCC	2 cut(s)	628, 693
BslFI	GGGAC	1 cut(s)	571
BsmAI	GTCTC	5 cut(s)	215, 261, 451, 481, 700
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	2 cut(s)	628, 693
Bsp143I	GATC	4 cut(s)	33, 127, 591, 665
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	628, 693
BspCNI	CTCAG	2 cut(s)	134, 532
BspHI	TCATGA	1 cut(s)	580
BspMAI	CTGCAG	1 cut(s)	192
BspPI	GGATC	1 cut(s)	673
BsrI	ACTGG	3 cut(s)	433, 735, 782
BssECI	CCNNGG	2 cut(s)	216, 695
BssMI	GATC	4 cut(s)	33, 127, 591, 665
BssT1I	CCWWGG	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	724
BstDEI	CTNAG	2 cut(s)	121, 519
BstF5I	GGATG	2 cut(s)	353, 731
BstKTI	GATC	4 cut(s)	36, 130, 594, 668
BstMAI	GTCTC	5 cut(s)	215, 261, 451, 481, 700
BstMBI	GATC	4 cut(s)	33, 127, 591, 665
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	174, 244
BstX2I	RGATCY	1 cut(s)	665
BstXI	CCANNNNNNTGG	2 cut(s)	307, 428
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	628, 693
BtsCI	GGATG	2 cut(s)	353, 731
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	22, 426
CciI	TCATGA	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	692
CviAII	CATG	5 cut(s)	83, 136, 443, 581, 710
DdeI	CTNAG	2 cut(s)	121, 519
DpnI	GATC	4 cut(s)	35, 129, 593, 667
DpnII	GATC	4 cut(s)	33, 127, 591, 665
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	695
Eco147I	AGGCCT	1 cut(s)	628
Eco32I	GATATC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	215
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	5 cut(s)	86, 139, 446, 584, 713
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	5 cut(s)	82, 135, 442, 580, 709
FauNDI	CATATG	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	188, 233
FokI	GGATG	2 cut(s)	340, 718
Fsp4HI	GCNGC	2 cut(s)	188, 233
FspBI	CTAG	2 cut(s)	314, 624
GluI	GCNGC	2 cut(s)	188, 233
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	628, 693
Hin1II	CATG	5 cut(s)	86, 139, 446, 584, 713
HinfI	GANTC	2 cut(s)	584, 761
HphI	GGTGA	3 cut(s)	124, 288, 443
Hpy166II	GTNNAC	2 cut(s)	434, 472
Hpy188I	TCNGA	3 cut(s)	47, 522, 670
Hpy188III	TCNNGA	2 cut(s)	115, 581
Hpy8I	GTNNAC	2 cut(s)	434, 472
HpyAV	CCTTC	3 cut(s)	121, 180, 460
HpyCH4III	ACNGT	1 cut(s)	724
HpyCH4V	TGCA	5 cut(s)	190, 467, 483, 613, 754
HpyF3I	CTNAG	2 cut(s)	121, 519
Hsp92II	CATG	5 cut(s)	86, 139, 446, 584, 713
Kzo9I	GATC	4 cut(s)	33, 127, 591, 665
Lsp1109I	GCAGC	2 cut(s)	174, 244
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	314, 624
MaeIII	GTNAC	2 cut(s)	163, 211
MalI	GATC	4 cut(s)	35, 129, 593, 667
MboI	GATC	4 cut(s)	33, 127, 591, 665
MboII	GAAGA	2 cut(s)	515, 649
MflI	RGATCY	1 cut(s)	665
MluCI	AATT	6 cut(s)	21, 156, 175, 198, 530, 642
MlyI	GAGTC	2 cut(s)	593, 770
MnlI	CCTC	4 cut(s)	5, 246, 367, 706
MseI	TTAA	2 cut(s)	276, 774
MslI	CAYNNNNRTG	2 cut(s)	441, 579
MspA1I	CMGCKG	2 cut(s)	125, 187
MspR9I	CCNGG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	217
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	4 cut(s)	33, 127, 591, 665
NlaIII	CATG	5 cut(s)	86, 139, 446, 584, 713
NmuCI	GTSAC	2 cut(s)	163, 211
PagI	TCATGA	1 cut(s)	580
PceI	AGGCCT	1 cut(s)	628
PctI	GAATGC	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	189, 234
PleI	GAGTC	2 cut(s)	592, 769
PpsI	GAGTC	2 cut(s)	592, 769
Psp6I	CCWGG	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	665
PvuII	CAGCTG	2 cut(s)	125, 187
RseI	CAYNNNNRTG	2 cut(s)	441, 579
SaqAI	TTAA	2 cut(s)	276, 774
SatI	GCNGC	2 cut(s)	188, 233
Sau3AI	GATC	4 cut(s)	33, 127, 591, 665
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	2 cut(s)	593, 770
ScrFI	CCNGG	1 cut(s)	217
SetI	ASST	8 cut(s)	127, 172, 189, 269, 604, 636, 717, 773
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	441, 579
SmlI	CTYRAG	1 cut(s)	597
SmoI	CTYRAG	1 cut(s)	597
Sse9I	AATT	6 cut(s)	21, 156, 175, 198, 530, 642
SseBI	AGGCCT	1 cut(s)	628
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	2 cut(s)	314, 624
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	1 cut(s)	724
TaqI	TCGA	3 cut(s)	417, 501, 555
TasI	AATT	6 cut(s)	21, 156, 175, 198, 530, 642
Tru1I	TTAA	2 cut(s)	276, 774
Tru9I	TTAA	2 cut(s)	276, 774
TscAI	CASTG	2 cut(s)	22, 433
TseFI	GTSAC	2 cut(s)	163, 211
TseI	GCWGC	2 cut(s)	187, 232
Tsp45I	GTSAC	2 cut(s)	163, 211
TspDTI	ATGAA	2 cut(s)	442, 720
TspRI	CASTG	2 cut(s)	22, 433
XapI	RAATTY	1 cut(s)	642
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	2 cut(s)	314, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.