MD02G1254800.v1.1

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0007526
Physical Location & Seq
Reverse (-)
30632096 .. 30648463
16368 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1254800.v1.1.491

Sequence Viewer

Length: 342 bp
ATGTGTTATTGGATGAGAGTAACTCATTTGGTGTGCTTGGAAAATCTGGAAGAGGTTGAAAAAATAGATATTATTACTGGTGCAATGGGACACGCATTAGCCACAGAAGGAGGATTTTGCACTGGAAGTGCTAGAGTCACCAATCACCAACGATTGAGTAGCTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATATCCTCGAGGAAAACCCTGGTCTGATAACAAAGCTGAAGAAAAATATTGCCATATTATGGAAAGGATTGTCAGCTATACAGGGCCTCTCATTCGCTAGCAGTCCAGAATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

114

Amino Acids

12.13

Weight (kDa)

5.85

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 20 - 110 2.5e-08 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 3 cut(s) 162, 262, 302
AluI AGCT 3 cut(s) 162, 262, 302
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 130, 137
AsuNHI GCTAGC 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 233
BbvI GCAGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 246
BfaI CTAG 2 cut(s) 132, 324
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 246
BmtI GCTAGC 1 cut(s) 327
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 82, 127
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 90
BseNI ACTGG 2 cut(s) 82, 127
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 233
BspANI GGCC 1 cut(s) 312
BspOI GCTAGC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 2 cut(s) 82, 127
BssECI CCNNGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 325
BstF5I GGATG 1 cut(s) 18
BstMWI GCNNNNNNNGC 2 cut(s) 209, 218
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 5 cut(s) 101, 162, 262, 302, 312
CviKI_1 RGCY 5 cut(s) 101, 162, 262, 302, 312
CviQI GTAC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 244
EcoRV GATATC 1 cut(s) 229
FaiI YATR 4 cut(s) 196, 281, 286, 305
FaqI GGGAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 132, 324
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 312
HinfI GANTC 2 cut(s) 135, 335
HphI GGTGA 2 cut(s) 130, 137
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 3 cut(s) 47, 332, 339
HpyAV CCTTC 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 83, 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 218
HpySE526I ACGT 1 cut(s) 171
LpnPI CCDG 7 cut(s) 32, 63, 108, 150, 231, 258, 293
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 2 cut(s) 132, 324
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 19, 136
MboII GAAGA 2 cut(s) 62, 277
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 5 cut(s) 46, 104, 229, 242, 323
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 209, 218
NheI GCTAGC 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 136
PaeR7I CTCGAG 1 cut(s) 233
PfeI GAWTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspPI GGNCC 1 cut(s) 310
PspXI VCTCGAGB 1 cut(s) 233
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 246
SetI ASST 5 cut(s) 57, 164, 174, 264, 304
Sfr274I CTCGAG 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SspI AATATT 1 cut(s) 274
SspMI CTAG 2 cut(s) 132, 324
StyD4I CCNGG 1 cut(s) 244
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 234
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 136
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 285
XhoI CTCGAG 1 cut(s) 233
XspI CTAG 2 cut(s) 132, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.