Rh7AG312400

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007526
Physical Location & Seq
Forward (+)
35146351 .. 35148956
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG312400.1

Sequence Viewer

Length: 711 bp
ATGAGAAGTTGCTTGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTCATCTTTCTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTCTGGAGGAAATCACTATGAAGAATAAGCGGGCTAAGAAACTCCGGCGCTATATTGTGGTTGAAGCTGTGTACCAGAATTCTGGCCAAATAGCCCCCTTGGGCGAAATTGTTAAATTGAAGGAGAAATATAGGTTTCGTGTTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAAAGCTGGACGAGGTCTCACGGAATTTTGCGGGGTTCTGGTTGAAAAGATAGATATAATTACTGCTGCAATGGGACACGCCTTAGCCACAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCACCAGCGATTGAGCAGTTCTGGGTATGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGCGGAGAACCCTGATCTGATAACGAAGTTGAAGAAAAACATTACCTTACTATGGAAAGGATTGTCAAGTGTAATGGGCCTCTCATTAGCAAGCAATCCAGAATCACCTATTGTGTTTCTCAAACTACAGAAGTCAACAAGTTCTGTGAAGAGTGACCTGCAACTCCTCAACGAAATTGCTGACTGTGTTGAGCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

236

Amino Acids

25.96

Weight (kDa)

8.82

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 9 - 215 1.9e-19 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 675
AciI CCGC 3 cut(s) 142, 321, 512
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 190, 314
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 561
AgsI TTSAA 5 cut(s) 82, 176, 232, 335, 541
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 2 cut(s) 179, 296
AluI AGCT 2 cut(s) 179, 296
Alw26I GTCTC 1 cut(s) 311
AoxI GGCC 2 cut(s) 196, 586
ApeKI GCWGC 2 cut(s) 356, 485
ApoI RAATTY 2 cut(s) 190, 314
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 586
AsuHPI GGTGA 2 cut(s) 413, 606
BalI TGGCCA 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 343, 472
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 60, 408
BfmI CTRYAG 1 cut(s) 635
BfoI RGCGCY 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 675
BisI GCNGC 2 cut(s) 357, 486
BlsI GCNGC 2 cut(s) 358, 487
BmgT120I GGNCC 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 210, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 561
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 210, 286
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 561
BseMI GCAATG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 2 cut(s) 343, 472
BsgI GTGCAG 1 cut(s) 379
BshFI GGCC 2 cut(s) 198, 588
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 561
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 2 cut(s) 198, 588
Bso31I GGTCTC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 418, 523
BspACI CCGC 3 cut(s) 142, 321, 512
BspANI GGCC 2 cut(s) 198, 588
BspMI ACCTGC 1 cut(s) 675
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 2 cut(s) 210, 286
BssMI GATC 2 cut(s) 418, 523
BssT1I CCWWGG 2 cut(s) 210, 286
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 144, 601
BstDEI CTNAG 2 cut(s) 147, 373
BstF5I GGATG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 421, 526
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 2 cut(s) 418, 523
BstMWI GCNNNNNNNGC 2 cut(s) 485, 494
BstSFI CTRYAG 1 cut(s) 635
BstV1I GCAGC 2 cut(s) 343, 472
BstV2I GAAGAC 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuRI GGCC 2 cut(s) 198, 588
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 396
BveI ACCTGC 1 cut(s) 675
Cac8I GCNNGC 2 cut(s) 144, 601
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 586
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 94
CviJI RGCY 7 cut(s) 146, 179, 198, 206, 296, 377, 588
CviKI_1 RGCY 7 cut(s) 146, 179, 198, 206, 296, 377, 588
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 147, 373
DpnI GATC 2 cut(s) 420, 525
DpnII GATC 2 cut(s) 418, 523
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 653
EarI CTCTTC 1 cut(s) 653
Eco130I CCWWGG 2 cut(s) 210, 286
Eco31I GGTCTC 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 210, 286
ErhI CCWWGG 2 cut(s) 210, 286
FaeI CATG 1 cut(s) 97
FaiI YATR 9 cut(s) 87, 95, 131, 165, 243, 347, 447, 472, 562
FaqI GGGAC 1 cut(s) 378
FatI CATG 1 cut(s) 93
FauI CCCGC 2 cut(s) 135, 314
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 357, 486
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 357, 486
FspBI CTAG 2 cut(s) 60, 408
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 357, 486
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 2 cut(s) 198, 588
HapII CCGG 1 cut(s) 157
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HinfI GANTC 4 cut(s) 24, 98, 390, 611
HpaII CCGG 1 cut(s) 157
HphI GGTGA 2 cut(s) 413, 606
Hpy166II GTNNAC 2 cut(s) 184, 645
Hpy188I TCNGA 1 cut(s) 528
Hpy188III TCNNGA 3 cut(s) 60, 116, 608
Hpy8I GTNNAC 2 cut(s) 184, 645
HpyAV CCTTC 3 cut(s) 14, 226, 377
HpyCH4III ACNGT 1 cut(s) 695
HpyCH4V TGCA 3 cut(s) 359, 396, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 494
HpyF3I CTNAG 2 cut(s) 147, 373
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 418, 523
Lsp1109I GCAGC 2 cut(s) 343, 472
MaeI CTAG 2 cut(s) 60, 408
MaeIII GTNAC 2 cut(s) 412, 662
MalI GATC 2 cut(s) 420, 525
MboI GATC 2 cut(s) 418, 523
MboII GAAGA 4 cut(s) 41, 145, 553, 670
MfeI CAATTG 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 8 cut(s) 69, 190, 219, 227, 314, 348, 684, 704
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 5 cut(s) 112, 296, 380, 599, 686
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 2 cut(s) 104, 225
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 485, 494
NdeII GATC 2 cut(s) 418, 523
NlaIII CATG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 662
OliI CACNNNNGTG 1 cut(s) 71
PfeI GAWTC 3 cut(s) 98, 390, 611
PflFI GACNNNGTC 1 cut(s) 303
PkrI GCNGC 2 cut(s) 358, 487
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 586
PsyI GACNNNGTC 1 cut(s) 303
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 104, 225
SatI GCNGC 2 cut(s) 357, 486
Sau3AI GATC 2 cut(s) 418, 523
Sau96I GGNCC 1 cut(s) 586
SchI GAGTC 1 cut(s) 33
SetI ASST 7 cut(s) 181, 248, 298, 307, 557, 619, 669
SfcI CTRYAG 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 8 cut(s) 69, 190, 219, 227, 314, 348, 684, 704
SsiI CCGC 3 cut(s) 142, 321, 512
SspMI CTAG 2 cut(s) 60, 408
StyI CCWWGG 2 cut(s) 210, 286
TaaI ACNGT 1 cut(s) 695
TasI AATT 8 cut(s) 69, 190, 219, 227, 314, 348, 684, 704
TfiI GAWTC 3 cut(s) 98, 390, 611
Tru1I TTAA 2 cut(s) 104, 225
Tru9I TTAA 2 cut(s) 104, 225
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 2 cut(s) 356, 485
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 3 cut(s) 33, 41, 146
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 403
Tth111I GACNNNGTC 1 cut(s) 303
XapI RAATTY 2 cut(s) 190, 314
XbaI TCTAGA 1 cut(s) 59
XspI CTAG 2 cut(s) 60, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.