RchiOBHm_Chr4g0392541

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007526
Physical Location & Seq
Forward (+)
8060744 .. 8061207
464 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36527

Sequence Viewer

Length: 297 bp
ATGATAGGACAAGTGGAATGCGATCTTGTTGTCATGAAAATAATATTAGAGAAAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCACCAGCGATTGTGCAGTTCTGGGTACGTCTTTTCTACTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAACCCTGATCTGATAACGAAGTTGAAGAAAAACATTACGTTACTATGTAAAGGTTTGTGCTTGATCTCATTTTTCATGTGCATGTGTGTTTCTCTTGGTTTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

98

Amino Acids

10.63

Weight (kDa)

5.68

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 20 - 82 6.1e-06 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 119
AgsI TTSAA 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 86
BbvI GCAGC 1 cut(s) 145
BclI TGATCA 1 cut(s) 91
BfaI CTAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 145
BsgI GTGCAG 2 cut(s) 52, 127
BsmI GAATGC 1 cut(s) 23
Bsp143I GATC 4 cut(s) 22, 91, 196, 252
BspHI TCATGA 1 cut(s) 33
BsrI ACTGG 1 cut(s) 76
BssMI GATC 4 cut(s) 22, 91, 196, 252
BstKTI GATC 4 cut(s) 25, 94, 199, 255
BstMBI GATC 4 cut(s) 22, 91, 196, 252
BstMWI GCNNNNNNNGC 2 cut(s) 158, 167
BstNSI RCATGY 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 33
Csp6I GTAC 1 cut(s) 118
CviAII CATG 3 cut(s) 34, 265, 271
CviQI GTAC 1 cut(s) 118
DpnI GATC 4 cut(s) 24, 93, 198, 254
DpnII GATC 4 cut(s) 22, 91, 196, 252
FaeI CATG 3 cut(s) 37, 268, 274
FaiI YATR 6 cut(s) 35, 145, 235, 266, 272, 295
FatI CATG 3 cut(s) 33, 264, 270
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 159
Hin1II CATG 3 cut(s) 37, 268, 274
HinfI GANTC 1 cut(s) 63
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 34, 182
HpyAV CCTTC 1 cut(s) 50
HpyCH4IV ACGT 2 cut(s) 120, 227
HpyCH4V TGCA 3 cut(s) 69, 108, 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 167
HpySE526I ACGT 2 cut(s) 120, 227
Hsp92II CATG 3 cut(s) 37, 268, 274
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 4 cut(s) 22, 91, 196, 252
LpnPI CCDG 4 cut(s) 57, 99, 110, 207
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 120, 227
MaeIII GTNAC 2 cut(s) 85, 228
MalI GATC 4 cut(s) 24, 93, 198, 254
MboI GATC 4 cut(s) 22, 91, 196, 252
MboII GAAGA 1 cut(s) 226
MnlI CCTC 2 cut(s) 53, 178
MslI CAYNNNNRTG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 158, 167
NdeII GATC 4 cut(s) 22, 91, 196, 252
NlaIII CATG 3 cut(s) 37, 268, 274
NspI RCATGY 1 cut(s) 274
PagI TCATGA 1 cut(s) 33
PctI GAATGC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 1 cut(s) 160
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 4 cut(s) 22, 91, 196, 252
SetI ASST 3 cut(s) 123, 230, 244
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SspI AATATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 81
TaiI ACGT 2 cut(s) 123, 230
TfiI GAWTC 1 cut(s) 63
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 50, 253
TspRI CASTG 1 cut(s) 76
XceI RCATGY 1 cut(s) 274
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.