Rw7G026460

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007526
Physical Location & Seq
Forward (+)
33652078 .. 33654446
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026460.1

Sequence Viewer

Length: 885 bp
ATGGTCTCTCCACCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTATTGTGTGAGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTCATCTTTCTAGAAGCACAATTGTGTATTTCAATCATAATGACATGGAATCATTAAGGAATACTCTGGAGGAAATCACTCTGAAGAATAAGCGGGCTAAGAAACTCCGGCGCTATATTGTGGTTGAAGCTGTGTACCAGAATTCTGGCGAAATAGCCCCCTTGGGCGAAATTGTTAAATTGAAGGAGAAATATAGGTTTCGTGTTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAAAGCTGGACGAGGTCTCATGGAATTTTGCGGGGTTCTGGTTGAAAAGATAGATATAATTACTGCTGCAATGGGACACGCCTTAGCCACAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGCGGAGAACCCTGATCTGATAAAGAAGTTGAAGAAAAACATTACGTCACTATGGAAAAGATTGTCGGGTGTAATGGGCCTCTCATTAGCAAGCAATCCAGAATCACCTATTGTGTTTCTCAGACTACAGAAGTCAACAAGTTCTGTGAAGAGTGACCTGCAACTCCTCAACGAAATTGCTGACTGTTTGTTAAAGGATCATTCAATTCTTGCGGTGGCGTCCAAAAGGTCGACACTTGATAAATGTCGTTTGCCCGTGGGAATTAGACTTTGTTTCTGCTGCCCATTCCGAATCAGATATGCTGAAGGCATCAGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

294

Amino Acids

32.54

Weight (kDa)

9.09

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 27 - 280 4.9e-20 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 729
AccI GTMKAC 1 cut(s) 794
AciI CCGC 4 cut(s) 196, 375, 566, 776
AclWI GGATC 1 cut(s) 768
AcsI RAATTY 2 cut(s) 244, 368
AcuI CTGAAG 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 782
AfaI GTAC 2 cut(s) 239, 500
AgsI TTSAA 6 cut(s) 136, 230, 286, 389, 595, 768
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 2 cut(s) 233, 350
AluI AGCT 2 cut(s) 233, 350
Alw26I GTCTC 2 cut(s) 10, 365
AlwI GGATC 1 cut(s) 768
AlwNI CAGNNNCTG 1 cut(s) 882
AoxI GGCC 1 cut(s) 640
ApeKI GCWGC 3 cut(s) 410, 539, 843
ApoI RAATTY 2 cut(s) 244, 368
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 640
AsuHPI GGTGA 2 cut(s) 467, 660
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 397, 526, 830
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 10, 365
BfaI CTAG 2 cut(s) 114, 462
BfmI CTRYAG 1 cut(s) 689
BfoI RGCGCY 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 729
BisI GCNGC 3 cut(s) 411, 540, 844
BlsI GCNGC 3 cut(s) 412, 541, 845
BmgT120I GGNCC 1 cut(s) 640
BpiI GAAGAC 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 782
BsaI GGTCTC 2 cut(s) 10, 365
BsaJI CCNNGG 3 cut(s) 264, 340, 819
Bse1I ACTGG 1 cut(s) 457
Bse3DI GCAATG 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 264, 340, 819
BseGI GGATG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 697
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 1 cut(s) 719
BseXI GCAGC 3 cut(s) 397, 526, 830
BsgI GTGCAG 1 cut(s) 433
BshFI GGCC 1 cut(s) 642
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 432
BsmAI GTCTC 2 cut(s) 10, 365
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 1 cut(s) 642
Bso31I GGTCTC 2 cut(s) 10, 365
Bsp143I GATC 3 cut(s) 472, 577, 760
BspACI CCGC 4 cut(s) 196, 375, 566, 776
BspANI GGCC 1 cut(s) 642
BspCNI CTCAG 1 cut(s) 696
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 1 cut(s) 768
BspTNI GGTCTC 2 cut(s) 10, 365
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 3 cut(s) 264, 340, 819
BssMI GATC 3 cut(s) 472, 577, 760
BssNI GRCGYC 1 cut(s) 782
BssT1I CCWWGG 2 cut(s) 264, 340
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 1 cut(s) 707
BstACI GRCGYC 1 cut(s) 782
BstC8I GCNNGC 2 cut(s) 198, 655
BstDEI CTNAG 3 cut(s) 201, 427, 683
BstDSI CCRYGG 1 cut(s) 819
BstF5I GGATG 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 3 cut(s) 475, 580, 763
BstMAI GTCTC 2 cut(s) 10, 365
BstMBI GATC 3 cut(s) 472, 577, 760
BstMWI GCNNNNNNNGC 3 cut(s) 31, 539, 548
BstSFI CTRYAG 1 cut(s) 689
BstV1I GCAGC 3 cut(s) 397, 526, 830
BstV2I GAAGAC 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 248
BsuRI GGCC 1 cut(s) 642
BtgI CCRYGG 1 cut(s) 819
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 3 cut(s) 27, 450, 880
BveI ACCTGC 1 cut(s) 729
Cac8I GCNNGC 2 cut(s) 198, 655
CaiI CAGNNNCTG 1 cut(s) 882
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 640
CseI GACGC 1 cut(s) 771
Csp6I GTAC 2 cut(s) 238, 499
CviAII CATG 3 cut(s) 15, 148, 364
CviJI RGCY 6 cut(s) 200, 233, 260, 350, 431, 642
CviKI_1 RGCY 6 cut(s) 200, 233, 260, 350, 431, 642
CviQI GTAC 2 cut(s) 238, 499
DdeI CTNAG 3 cut(s) 201, 427, 683
DpnI GATC 3 cut(s) 474, 579, 762
DpnII GATC 3 cut(s) 472, 577, 760
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
Eco130I CCWWGG 2 cut(s) 264, 340
Eco31I GGTCTC 2 cut(s) 10, 365
Eco32I GATATC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 244
EcoRV GATATC 1 cut(s) 54
EcoT14I CCWWGG 2 cut(s) 264, 340
ErhI CCWWGG 2 cut(s) 264, 340
FaeI CATG 3 cut(s) 18, 151, 367
FaqI GGGAC 1 cut(s) 432
FatI CATG 3 cut(s) 14, 147, 363
FauI CCCGC 2 cut(s) 189, 368
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 794
Fnu4HI GCNGC 3 cut(s) 411, 540, 844
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 411, 540, 844
FspBI CTAG 2 cut(s) 114, 462
GlaI GCGC 1 cut(s) 215
GluI GCNGC 3 cut(s) 411, 540, 844
GsuI CTGGAG 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 1 cut(s) 642
HapII CCGG 1 cut(s) 211
HgaI GACGC 1 cut(s) 771
HhaI GCGC 1 cut(s) 216
Hin1I GRCGYC 1 cut(s) 782
Hin1II CATG 3 cut(s) 18, 151, 367
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HincII GTYRAC 2 cut(s) 699, 795
HindII GTYRAC 2 cut(s) 699, 795
HinfI GANTC 5 cut(s) 78, 152, 444, 665, 855
HpaII CCGG 1 cut(s) 211
HphI GGTGA 2 cut(s) 467, 660
Hpy166II GTNNAC 3 cut(s) 238, 699, 795
Hpy188I TCNGA 5 cut(s) 186, 582, 686, 854, 860
Hpy188III TCNNGA 3 cut(s) 114, 170, 662
Hpy8I GTNNAC 3 cut(s) 238, 699, 795
HpyAV CCTTC 4 cut(s) 68, 280, 431, 863
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 2 cut(s) 501, 608
HpyCH4V TGCA 5 cut(s) 25, 41, 413, 450, 724
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 539, 548
HpyF3I CTNAG 3 cut(s) 201, 427, 683
HpySE526I ACGT 2 cut(s) 501, 608
Hsp92I GRCGYC 1 cut(s) 782
Hsp92II CATG 3 cut(s) 18, 151, 367
HspAI GCGC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 3 cut(s) 472, 577, 760
Lsp1109I GCAGC 3 cut(s) 397, 526, 830
MaeI CTAG 2 cut(s) 114, 462
MaeII ACGT 2 cut(s) 501, 608
MaeIII GTNAC 4 cut(s) 466, 609, 716, 878
MalI GATC 3 cut(s) 474, 579, 762
MboI GATC 3 cut(s) 472, 577, 760
MboII GAAGA 4 cut(s) 95, 199, 607, 724
MfeI CAATTG 1 cut(s) 123
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 6 cut(s) 61, 166, 350, 434, 653, 740
MseI TTAA 3 cut(s) 158, 279, 755
MslI CAYNNNNRTG 2 cut(s) 61, 125
MspI CCGG 1 cut(s) 211
MunI CAATTG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 31, 539, 548
NdeII GATC 3 cut(s) 472, 577, 760
NlaIII CATG 3 cut(s) 18, 151, 367
NmuCI GTSAC 3 cut(s) 609, 716, 878
OliI CACNNNNGTG 1 cut(s) 125
PfeI GAWTC 4 cut(s) 152, 444, 665, 855
PflFI GACNNNGTC 1 cut(s) 357
PkrI GCNGC 3 cut(s) 412, 541, 845
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 882
PsyI GACNNNGTC 1 cut(s) 357
RsaI GTAC 2 cut(s) 239, 500
RsaNI GTAC 2 cut(s) 238, 499
RseI CAYNNNNRTG 2 cut(s) 61, 125
SalI GTCGAC 1 cut(s) 793
SaqAI TTAA 3 cut(s) 158, 279, 755
SatI GCNGC 3 cut(s) 411, 540, 844
Sau3AI GATC 3 cut(s) 472, 577, 760
Sau96I GGNCC 1 cut(s) 640
SchI GAGTC 1 cut(s) 87
SetI ASST 9 cut(s) 235, 302, 352, 361, 504, 611, 673, 723, 794
SfcI CTRYAG 1 cut(s) 689
SmiMI CAYNNNNRTG 2 cut(s) 61, 125
SsiI CCGC 4 cut(s) 196, 375, 566, 776
SspMI CTAG 2 cut(s) 114, 462
StyI CCWWGG 2 cut(s) 264, 340
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 2 cut(s) 504, 611
TaqI TCGA 1 cut(s) 794
TfiI GAWTC 4 cut(s) 152, 444, 665, 855
Tru1I TTAA 3 cut(s) 158, 279, 755
Tru9I TTAA 3 cut(s) 158, 279, 755
TscAI CASTG 2 cut(s) 27, 457
TseFI GTSAC 3 cut(s) 609, 716, 878
TseI GCWGC 3 cut(s) 410, 539, 843
Tsp45I GTSAC 3 cut(s) 609, 716, 878
TspDTI ATGAA 2 cut(s) 87, 95
TspRI CASTG 2 cut(s) 27, 457
Tth111I GACNNNGTC 1 cut(s) 357
XapI RAATTY 2 cut(s) 244, 368
XbaI TCTAGA 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 794
XspI CTAG 2 cut(s) 114, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.