Rw7G028190

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007526
Physical Location & Seq
Forward (+)
37883794 .. 37888789
4996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028190.1

Sequence Viewer

Length: 1275 bp
ATGAAACTTCATTATGTTGCATATTTAAAGTTCACTGAGTATTGCAAGCAAGTACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGCGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATACAATAGTCAATGGCAAAGAAGTAGTGAACTTTGAGTCATGTACCTCTGCATTGGAGAAATATGGTGTTGGTTCATGTGGTCCTCATGGGTTCTATGGAACAATTGATGTCCACCTTGATTGTGAGGCAAGAGTAGCAAAGTTTTTGGGAACTCCTGACTCAATTCTCTATTCTTATGGTCTCTCTCCATCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTGTTTCCATTGGGGAATCAAAATGGTCTTCATCTTTCTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTATGGAGGAAATCACTCTGAAGAATAAGCGGAATTCTGGCCAAATAGCCCCCTTGGGCGAAACTGTTAAATTGAAGGAGAAATATAGGTTTCGTGTTTTATTAGATAAGAGCAACTCATTTGGTGTCCTTGGAAAAGCTGGACGAGGTCTCATGGAATTTTGCGGGGTTCTGGTTGAAAAGATAGATATAATTACTGCTGCAATGGGACACGCCTTAGCCACAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCATATTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGCGGAGAACCCTGATCTGATAACGAAGTTGAAGAAAAACATTACGTCACTATGGAAAAGATTGTCAGGTGTAATGGGCCTCTCATTAGCAAGCAATCCAGAATCACCTATTTTGTTTCTCAAACTACAGAAGTCAACAAGTTCTGTGAAGAGTGACCTGCAACTCCTCAACGAAATTGCTGACTGTTTGTTAAAGGATCATTCAATTCTTGCGGTGGCGTCCAAAATGTCGACACTTGATAAATGTCGTTTGCCCGTGGGAATTAGACTGTTTGTTTCTGCTGCCCATTCCGAATTAGATCTGCTGAAGGCATCAGAGTCACTGAAAACGGTTGCAGAATCAGTGTTGAAGAATCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

424

Amino Acids

46.58

Weight (kDa)

8.21

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 98 - 409 1.2e-15 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1077
AccI GTMKAC 1 cut(s) 1142
AciI CCGC 4 cut(s) 592, 726, 914, 1124
AclWI GGATC 1 cut(s) 1116
AcoI YGGCCR 1 cut(s) 601
AcsI RAATTY 2 cut(s) 595, 719
AcuI CTGAAG 2 cut(s) 602, 1238
AcyI GRCGYC 1 cut(s) 1130
AfaI GTAC 3 cut(s) 54, 280, 851
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 6 cut(s) 532, 637, 740, 943, 1116, 1261
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 1 cut(s) 701
AluI AGCT 1 cut(s) 701
Alw26I GTCTC 2 cut(s) 422, 716
AlwI GGATC 1 cut(s) 1116
AoxI GGCC 3 cut(s) 230, 601, 988
ApeKI GCWGC 4 cut(s) 224, 761, 887, 1193
ApoI RAATTY 2 cut(s) 595, 719
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 230, 317, 988
AsuHPI GGTGA 2 cut(s) 818, 1008
AvaII GGWCC 1 cut(s) 317
BalI TGGCCA 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 491
BbvI GCAGC 4 cut(s) 211, 748, 874, 1180
BccI CCATC 1 cut(s) 433
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 2 cut(s) 422, 716
BfaI CTAG 2 cut(s) 510, 813
BfmI CTRYAG 2 cut(s) 225, 1037
BfuAI ACCTGC 1 cut(s) 1077
BglII AGATCT 1 cut(s) 1210
BisI GCNGC 4 cut(s) 225, 762, 888, 1194
BlsI GCNGC 4 cut(s) 226, 763, 889, 1195
BmcAI AGTACT 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 230, 317, 988
BmiI GGNNCC 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 1232
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 778
BsaHI GRCGYC 1 cut(s) 1130
BsaI GGTCTC 2 cut(s) 422, 716
BsaJI CCNNGG 3 cut(s) 615, 691, 1167
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 209, 808
Bse3DI GCAATG 1 cut(s) 771
BseDI CCNNGG 3 cut(s) 615, 691, 1167
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 209, 808
BseRI GAGGAG 1 cut(s) 1067
BseXI GCAGC 4 cut(s) 211, 748, 874, 1180
BsgI GTGCAG 1 cut(s) 784
BshFI GGCC 3 cut(s) 232, 603, 990
BslFI GGGAC 1 cut(s) 783
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 422, 716
BsmFI GGGAC 1 cut(s) 783
BsnI GGCC 3 cut(s) 232, 603, 990
Bso31I GGTCTC 2 cut(s) 422, 716
Bsp143I GATC 5 cut(s) 139, 823, 925, 1108, 1210
BspACI CCGC 4 cut(s) 592, 726, 914, 1124
BspANI GGCC 3 cut(s) 232, 603, 990
BspCNI CTCAG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 1077
BspPI GGATC 1 cut(s) 1116
BspTNI GGTCTC 2 cut(s) 422, 716
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 2 cut(s) 209, 808
BssECI CCNNGG 3 cut(s) 615, 691, 1167
BssMI GATC 5 cut(s) 139, 823, 925, 1108, 1210
BssNI GRCGYC 1 cut(s) 1130
BssT1I CCWWGG 2 cut(s) 615, 691
Bst4CI ACNGT 4 cut(s) 628, 1097, 1182, 1243
Bst6I CTCTTC 1 cut(s) 1055
BstACI GRCGYC 1 cut(s) 1130
BstC8I GCNNGC 2 cut(s) 47, 1003
BstDEI CTNAG 3 cut(s) 36, 108, 778
BstDSI CCRYGG 1 cut(s) 1167
BstKTI GATC 5 cut(s) 142, 826, 928, 1111, 1213
BstMAI GTCTC 2 cut(s) 422, 716
BstMBI GATC 5 cut(s) 139, 823, 925, 1108, 1210
BstMWI GCNNNNNNNGC 4 cut(s) 371, 445, 887, 896
BstSFI CTRYAG 2 cut(s) 225, 1037
BstV1I GCAGC 4 cut(s) 211, 748, 874, 1180
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 1210
BstYI RGATCY 1 cut(s) 1210
BsuRI GGCC 3 cut(s) 232, 603, 990
BtgI CCRYGG 1 cut(s) 1167
BtsIMutI CAGTG 6 cut(s) 33, 216, 441, 801, 1232, 1260
BveI ACCTGC 1 cut(s) 1077
Cac8I GCNNGC 2 cut(s) 47, 1003
Cfr13I GGNCC 3 cut(s) 230, 317, 988
CseI GACGC 1 cut(s) 1119
Csp6I GTAC 3 cut(s) 53, 279, 850
CspCI CAANNNNNGTGG 2 cut(s) 338, 373
CviAII CATG 6 cut(s) 276, 312, 323, 429, 544, 715
CviJI RGCY 8 cut(s) 103, 115, 232, 603, 611, 701, 782, 990
CviKI_1 RGCY 8 cut(s) 103, 115, 232, 603, 611, 701, 782, 990
CviQI GTAC 3 cut(s) 53, 279, 850
DdeI CTNAG 3 cut(s) 36, 108, 778
DpnI GATC 5 cut(s) 141, 825, 927, 1110, 1212
DpnII GATC 5 cut(s) 139, 823, 925, 1108, 1210
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 601
Eam1104I CTCTTC 1 cut(s) 1055
EarI CTCTTC 1 cut(s) 1055
Eco130I CCWWGG 2 cut(s) 615, 691
Eco31I GGTCTC 2 cut(s) 422, 716
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 602, 1238
EcoRI GAATTC 1 cut(s) 595
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 2 cut(s) 615, 691
ErhI CCWWGG 2 cut(s) 615, 691
FaeI CATG 6 cut(s) 279, 315, 326, 432, 547, 718
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 783
FatI CATG 6 cut(s) 275, 311, 322, 428, 543, 714
FauI CCCGC 1 cut(s) 719
FbaI TGATCA 1 cut(s) 823
FblI GTMKAC 1 cut(s) 1142
Fnu4HI GCNGC 4 cut(s) 225, 762, 888, 1194
Fsp4HI GCNGC 4 cut(s) 225, 762, 888, 1194
FspBI CTAG 2 cut(s) 510, 813
GluI GCNGC 4 cut(s) 225, 762, 888, 1194
HaeIII GGCC 3 cut(s) 232, 603, 990
HgaI GACGC 1 cut(s) 1119
Hin1I GRCGYC 1 cut(s) 1130
Hin1II CATG 6 cut(s) 279, 315, 326, 432, 547, 718
HincII GTYRAC 2 cut(s) 1047, 1143
HindII GTYRAC 2 cut(s) 1047, 1143
HinfI GANTC 9 cut(s) 272, 395, 487, 548, 795, 1013, 1229, 1250, 1264
HphI GGTGA 2 cut(s) 818, 1008
Hpy166II GTNNAC 5 cut(s) 33, 265, 349, 1047, 1143
Hpy188I TCNGA 4 cut(s) 582, 930, 1204, 1228
Hpy188III TCNNGA 4 cut(s) 161, 392, 510, 1010
Hpy8I GTNNAC 5 cut(s) 33, 265, 349, 1047, 1143
HpyAV CCTTC 4 cut(s) 121, 631, 782, 1213
HpyCH4III ACNGT 4 cut(s) 628, 1097, 1182, 1243
HpyCH4IV ACGT 2 cut(s) 852, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 445, 887, 896
HpyF3I CTNAG 3 cut(s) 36, 108, 778
HpySE526I ACGT 2 cut(s) 852, 956
Hsp92I GRCGYC 1 cut(s) 1130
Hsp92II CATG 6 cut(s) 279, 315, 326, 432, 547, 718
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 5 cut(s) 139, 823, 925, 1108, 1210
Lsp1109I GCAGC 4 cut(s) 211, 748, 874, 1180
LweI GCATC 1 cut(s) 1232
MaeI CTAG 2 cut(s) 510, 813
MaeII ACGT 2 cut(s) 852, 956
MaeIII GTNAC 5 cut(s) 95, 817, 957, 1064, 1230
MalI GATC 5 cut(s) 141, 825, 927, 1110, 1212
MboI GATC 5 cut(s) 139, 823, 925, 1108, 1210
MboII GAAGA 6 cut(s) 200, 491, 595, 955, 1072, 1273
MfeI CAATTG 2 cut(s) 339, 519
MflI RGATCY 1 cut(s) 1210
MlsI TGGCCA 1 cut(s) 603
MluNI TGGCCA 1 cut(s) 603
MlyI GAGTC 3 cut(s) 281, 389, 1238
MmeI TCCRAC 1 cut(s) 195
Mox20I TGGCCA 1 cut(s) 603
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 603
MseI TTAA 5 cut(s) 26, 119, 554, 630, 1103
MslI CAYNNNNRTG 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 603
MunI CAATTG 2 cut(s) 339, 519
MwoI GCNNNNNNNGC 4 cut(s) 371, 445, 887, 896
NdeII GATC 5 cut(s) 139, 823, 925, 1108, 1210
NlaIII CATG 6 cut(s) 279, 315, 326, 432, 547, 718
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 3 cut(s) 957, 1064, 1230
OliI CACNNNNGTG 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 6 cut(s) 487, 548, 795, 1013, 1250, 1264
PflFI GACNNNGTC 1 cut(s) 708
PkrI GCNGC 4 cut(s) 226, 763, 889, 1195
PleI GAGTC 3 cut(s) 280, 389, 1237
PpsI GAGTC 3 cut(s) 280, 389, 1237
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 3 cut(s) 230, 317, 988
PstI CTGCAG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 1210
PsyI GACNNNGTC 1 cut(s) 708
RsaI GTAC 3 cut(s) 54, 280, 851
RsaNI GTAC 3 cut(s) 53, 279, 850
RseI CAYNNNNRTG 1 cut(s) 521
SalI GTCGAC 1 cut(s) 1141
SaqAI TTAA 5 cut(s) 26, 119, 554, 630, 1103
SatI GCNGC 4 cut(s) 225, 762, 888, 1194
Sau3AI GATC 5 cut(s) 139, 823, 925, 1108, 1210
Sau96I GGNCC 3 cut(s) 230, 317, 988
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 3 cut(s) 281, 389, 1238
SfaNI GCATC 1 cut(s) 1232
SfcI CTRYAG 2 cut(s) 225, 1037
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 521
SsiI CCGC 4 cut(s) 592, 726, 914, 1124
SspMI CTAG 2 cut(s) 510, 813
StyI CCWWGG 2 cut(s) 615, 691
TaaI ACNGT 4 cut(s) 628, 1097, 1182, 1243
TaiI ACGT 2 cut(s) 855, 959
TaqI TCGA 1 cut(s) 1142
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 6 cut(s) 487, 548, 795, 1013, 1250, 1264
Tru1I TTAA 5 cut(s) 26, 119, 554, 630, 1103
Tru9I TTAA 5 cut(s) 26, 119, 554, 630, 1103
TscAI CASTG 6 cut(s) 40, 216, 441, 808, 1239, 1260
TseFI GTSAC 3 cut(s) 957, 1064, 1230
TseI GCWGC 4 cut(s) 224, 761, 887, 1193
Tsp45I GTSAC 3 cut(s) 957, 1064, 1230
TspDTI ATGAA 4 cut(s) 17, 216, 300, 491
TspRI CASTG 6 cut(s) 40, 216, 441, 808, 1239, 1260
Tth111I GACNNNGTC 1 cut(s) 708
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 2 cut(s) 595, 719
XbaI TCTAGA 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 1142
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 510, 813
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.