RLG00000036877

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007526
Physical Location & Seq
Forward (+)
86033921 .. 86041626
7706 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036877

Sequence Viewer

Length: 714 bp
ATGGGAGCGGAGAAAGCAGAGGTGTCGTTGGATTCGTTGATCGCCGGGTTCAACAGTCAGATCTCAGAGCTCCAAGAGCTCGTTATTGCTCGAAATAGGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTCAGGGCGATGGGCTACGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTCATCTTTCTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTTTGGAGGAAATCGCTCTGAAGAATAAGCGGGCTAAGAAGCTCCGGCGCTATATTGTGGTTGAAGCTGTGTACCAGAATTCTGGCCAAATAGCCCTCTTGGGCGAAATTGTTAAATTGAAGGAGAAATATAGGTTTCATGTTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAAAGCTGGACGAGGTCTCACAGAATTTTGCGGGGTTCTGGTTGAAAAGATAGATATAATTACTGCTGCAATGGGACACGCCGTAGCCGCAGAAAGAGGATTCTGCACTGGAAGTGCTAGAGTTACTAATCACCAGACCACAACAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

238

Amino Acids

26.56

Weight (kDa)

6.61

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 101 - 233 5.8e-08 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 8
AciI CCGC 4 cut(s) 8, 415, 594, 651
AcoI YGGCCR 1 cut(s) 469
AcsI RAATTY 2 cut(s) 463, 587
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 5 cut(s) 52, 355, 449, 505, 608
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AleI CACNNNNGTG 1 cut(s) 344
AluBI AGCT 5 cut(s) 70, 79, 427, 452, 569
AluI AGCT 5 cut(s) 70, 79, 427, 452, 569
Alw21I GWGCWC 2 cut(s) 72, 81
Alw26I GTCTC 1 cut(s) 584
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 123, 629
ApoI RAATTY 2 cut(s) 463, 587
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 435
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 686
BalI TGGCCA 1 cut(s) 471
BanII GRGCYC 2 cut(s) 72, 81
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 2 cut(s) 72, 81
BbvI GCAGC 2 cut(s) 110, 616
BccI CCATC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 629
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 2 cut(s) 333, 681
BfmI CTRYAG 1 cut(s) 124
BfoI RGCGCY 1 cut(s) 436
BglII AGATCT 1 cut(s) 60
BisI GCNGC 3 cut(s) 124, 630, 651
BlsI GCNGC 3 cut(s) 125, 631, 652
Bme1390I CCNGG 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 269
BmuI ACTGGG 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BpuMI CCSGG 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 559
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 275, 676
Bse3DI GCAATG 1 cut(s) 639
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 275, 676
BseXI GCAGC 2 cut(s) 110, 616
BsgI GTGCAG 1 cut(s) 652
BshFI GGCC 1 cut(s) 471
BsiHKAI GWGCWC 2 cut(s) 72, 81
BsiSI CCGG 2 cut(s) 45, 430
BslFI GGGAC 1 cut(s) 651
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 584
BsmFI GGGAC 1 cut(s) 651
BsnI GGCC 1 cut(s) 471
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 72, 81
Bsp143I GATC 3 cut(s) 39, 60, 205
BspACI CCGC 4 cut(s) 8, 415, 594, 651
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 2 cut(s) 275, 676
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 3 cut(s) 39, 60, 205
BssT1I CCWWGG 1 cut(s) 559
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 64, 174, 420
BstF5I GGATG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 3 cut(s) 42, 63, 208
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 3 cut(s) 39, 60, 205
BstMWI GCNNNNNNNGC 3 cut(s) 14, 76, 650
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 110, 616
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 60
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 282, 669
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 1 cut(s) 435
Csp6I GTAC 1 cut(s) 457
CviAII CATG 2 cut(s) 367, 524
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 3 cut(s) 64, 174, 420
DpnI GATC 3 cut(s) 41, 62, 207
DpnII GATC 3 cut(s) 39, 60, 205
EaeI YGGCCR 1 cut(s) 469
Ecl136II GAGCTC 2 cut(s) 70, 79
Eco130I CCWWGG 1 cut(s) 559
Eco24I GRGCYC 2 cut(s) 72, 81
Eco31I GGTCTC 1 cut(s) 584
Eco53kI GAGCTC 2 cut(s) 70, 79
Eco57I CTGAAG 1 cut(s) 425
EcoICRI GAGCTC 2 cut(s) 70, 79
EcoRI GAATTC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 559
EcoT38I GRGCYC 2 cut(s) 72, 81
ErhI CCWWGG 1 cut(s) 559
FaeI CATG 2 cut(s) 370, 527
FaiI YATR 9 cut(s) 211, 260, 267, 360, 368, 438, 516, 525, 620
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 1 cut(s) 651
FatI CATG 2 cut(s) 366, 523
FauI CCCGC 2 cut(s) 408, 587
Fnu4HI GCNGC 3 cut(s) 124, 630, 651
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 2 cut(s) 72, 81
Fsp4HI GCNGC 3 cut(s) 124, 630, 651
FspBI CTAG 2 cut(s) 333, 681
GlaI GCGC 1 cut(s) 434
GluI GCNGC 3 cut(s) 124, 630, 651
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 1 cut(s) 471
HapII CCGG 2 cut(s) 45, 430
HhaI GCGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 370, 527
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 4 cut(s) 32, 297, 371, 663
HpaII CCGG 2 cut(s) 45, 430
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 3 cut(s) 60, 67, 405
Hpy188III TCNNGA 2 cut(s) 227, 333
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 3 cut(s) 187, 287, 499
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 126, 262, 632, 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 76, 650
HpyF3I CTNAG 3 cut(s) 64, 174, 420
Hsp92II CATG 2 cut(s) 370, 527
HspAI GCGC 1 cut(s) 433
Kzo9I GATC 3 cut(s) 39, 60, 205
LmnI GCTCC 3 cut(s) 5, 75, 432
Lsp1109I GCAGC 2 cut(s) 110, 616
MaeI CTAG 2 cut(s) 333, 681
MaeIII GTNAC 2 cut(s) 161, 685
MalI GATC 3 cut(s) 41, 62, 207
MbiI CCGCTC 1 cut(s) 8
MboI GATC 3 cut(s) 39, 60, 205
MboII GAAGA 3 cut(s) 266, 314, 418
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 2 cut(s) 72, 81
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 6 cut(s) 342, 463, 492, 500, 587, 621
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 2 cut(s) 9, 261
MnlI CCTC 8 cut(s) 13, 208, 243, 252, 385, 491, 569, 653
Mox20I TGGCCA 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 471
MseI TTAA 3 cut(s) 185, 377, 498
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 471
MspI CCGG 2 cut(s) 45, 430
MspR9I CCNGG 1 cut(s) 46
MunI CAATTG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 14, 76, 650
NciI CCSGG 1 cut(s) 46
NdeII GATC 3 cut(s) 39, 60, 205
NlaIII CATG 2 cut(s) 370, 527
NlaIV GGNNCC 1 cut(s) 225
OliI CACNNNNGTG 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 32, 371, 663
PflFI GACNNNGTC 1 cut(s) 576
PkrI GCNGC 3 cut(s) 125, 631, 652
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp124BI GAGCTC 2 cut(s) 72, 81
PspN4I GGNNCC 1 cut(s) 225
PstI CTGCAG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 60
PsyI GACNNNGTC 1 cut(s) 576
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 2 cut(s) 72, 81
SaqAI TTAA 3 cut(s) 185, 377, 498
SatI GCNGC 3 cut(s) 124, 630, 651
Sau3AI GATC 3 cut(s) 39, 60, 205
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 2 cut(s) 72, 81
SfcI CTRYAG 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 6 cut(s) 342, 463, 492, 500, 587, 621
SsiI CCGC 4 cut(s) 8, 415, 594, 651
SspI AATATT 1 cut(s) 132
SspMI CTAG 2 cut(s) 333, 681
SstI GAGCTC 2 cut(s) 72, 81
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 91
TasI AATT 6 cut(s) 342, 463, 492, 500, 587, 621
TauI GCSGC 1 cut(s) 653
TfiI GAWTC 3 cut(s) 32, 371, 663
Tru1I TTAA 3 cut(s) 185, 377, 498
Tru9I TTAA 3 cut(s) 185, 377, 498
TscAI CASTG 2 cut(s) 282, 676
TseI GCWGC 2 cut(s) 123, 629
TspDTI ATGAA 4 cut(s) 282, 306, 314, 512
TspRI CASTG 2 cut(s) 282, 676
Tth111I GACNNNGTC 1 cut(s) 576
XapI RAATTY 2 cut(s) 463, 587
XbaI TCTAGA 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 2 cut(s) 333, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.