Rw0G020880

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00958
OG0007526
Physical Location & Seq
Forward (+)
40171 .. 41734
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020880.1

Sequence Viewer

Length: 735 bp
ATGTCACTGGAAAGTCAACAAGATGACCTTTCATCCTTTCATAGTTGCCATAATTCTGGCGAAATAGCCCCCTTGGGCGAAATTGTTAAATTGAAGGAGAAATATAGGTTTCGTGTTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAAAGCTGGACGAGGTCTCATGGAATTTTGCGGGGTTCTGGTTGAAAAGATAGATATAATTACTGCTGCAATGGGACACGCCTTAGCCACAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGCGGAGAACCCTGATCTGATAACGAAGTTGAAGAAAAACATTACGTCACTATGGAAAAGATTGTCAGGTGTAATGGGCCTCTCATTAGCAAGCAATCCAGAATCACCTATTGTGTTTCTCAAACTACAGAAGTCAACAAGTTCTGTGAAGAGTGACCTGCAACTCCTCAACGAAATTGCTGACTGTTTGTTAAAGGATCATTCAATTCTTGCGGTGGCGTCCAAAATGTCGACACTTGATAAATGTCGTTTGCCCGTGGGAATTAGACTGTTTGTTTCTGCTGCCCATTCCGAATCAGATCTGCTGAAGGCATCAGAGTCACTGAAAACGGTTGCAGAATCAGTGCTGAAGAATCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

244

Amino Acids

26.23

Weight (kDa)

7.04

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 14 - 231 1.9e-14 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 537
AccI GTMKAC 1 cut(s) 602
AciI CCGC 3 cut(s) 183, 374, 584
AclWI GGATC 1 cut(s) 576
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 698
AcyI GRCGYC 1 cut(s) 590
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 4 cut(s) 94, 197, 403, 576
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 576
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 3 cut(s) 218, 347, 653
ApoI RAATTY 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 2 cut(s) 275, 468
BbvI GCAGC 3 cut(s) 205, 334, 640
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 537
BglII AGATCT 1 cut(s) 670
BisI GCNGC 3 cut(s) 219, 348, 654
BlsI GCNGC 3 cut(s) 220, 349, 655
BmgT120I GGNCC 1 cut(s) 448
BmsI GCATC 1 cut(s) 692
BplI GAGNNNNNCTC 2 cut(s) 119, 151
Bpu10I CCTNAGC 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 590
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 3 cut(s) 72, 148, 627
Bse1I ACTGG 2 cut(s) 12, 265
Bse3DI GCAATG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 72, 148, 627
BseGI GGATG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 228
BseNI ACTGG 2 cut(s) 12, 265
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 3 cut(s) 205, 334, 640
BsgI GTGCAG 1 cut(s) 241
BshFI GGCC 1 cut(s) 450
BslFI GGGAC 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 173
Bsp143I GATC 4 cut(s) 280, 385, 568, 670
BspACI CCGC 3 cut(s) 183, 374, 584
BspANI GGCC 1 cut(s) 450
BspMI ACCTGC 1 cut(s) 537
BspPI GGATC 1 cut(s) 576
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 2 cut(s) 12, 265
BssECI CCNNGG 3 cut(s) 72, 148, 627
BssMI GATC 4 cut(s) 280, 385, 568, 670
BssNI GRCGYC 1 cut(s) 590
BssT1I CCWWGG 2 cut(s) 72, 148
Bst4CI ACNGT 3 cut(s) 557, 642, 703
Bst6I CTCTTC 1 cut(s) 515
BstACI GRCGYC 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 4 cut(s) 283, 388, 571, 673
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 4 cut(s) 280, 385, 568, 670
BstMWI GCNNNNNNNGC 2 cut(s) 347, 356
BstSFI CTRYAG 1 cut(s) 497
BstV1I GCAGC 3 cut(s) 205, 334, 640
BstX2I RGATCY 1 cut(s) 670
BstXI CCANNNNNNTGG 1 cut(s) 56
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 4 cut(s) 5, 258, 692, 720
BveI ACCTGC 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 1 cut(s) 579
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 68, 158, 239, 450
CviKI_1 RGCY 4 cut(s) 68, 158, 239, 450
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 235
DpnI GATC 4 cut(s) 282, 387, 570, 672
DpnII GATC 4 cut(s) 280, 385, 568, 670
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco130I CCWWGG 2 cut(s) 72, 148
Eco31I GGTCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 698
EcoT14I CCWWGG 2 cut(s) 72, 148
ErhI CCWWGG 2 cut(s) 72, 148
FaeI CATG 1 cut(s) 175
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 171
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 602
Fnu4HI GCNGC 3 cut(s) 219, 348, 654
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 3 cut(s) 219, 348, 654
FspBI CTAG 1 cut(s) 270
GluI GCNGC 3 cut(s) 219, 348, 654
HaeIII GGCC 1 cut(s) 450
HgaI GACGC 1 cut(s) 579
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 3 cut(s) 17, 507, 603
HindII GTYRAC 3 cut(s) 17, 507, 603
HinfI GANTC 6 cut(s) 252, 473, 665, 689, 710, 724
HphI GGTGA 2 cut(s) 275, 468
Hpy166II GTNNAC 3 cut(s) 17, 507, 603
Hpy188I TCNGA 4 cut(s) 390, 664, 670, 688
Hpy188III TCNNGA 1 cut(s) 470
Hpy8I GTNNAC 3 cut(s) 17, 507, 603
HpyAV CCTTC 3 cut(s) 88, 239, 673
HpyCH4III ACNGT 3 cut(s) 557, 642, 703
HpyCH4IV ACGT 2 cut(s) 309, 416
HpyCH4V TGCA 4 cut(s) 221, 258, 532, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 356
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 2 cut(s) 309, 416
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 4 cut(s) 280, 385, 568, 670
Lsp1109I GCAGC 3 cut(s) 205, 334, 640
LweI GCATC 1 cut(s) 692
MaeI CTAG 1 cut(s) 270
MaeII ACGT 2 cut(s) 309, 416
MaeIII GTNAC 5 cut(s) 3, 274, 417, 524, 690
MalI GATC 4 cut(s) 282, 387, 570, 672
MboI GATC 4 cut(s) 280, 385, 568, 670
MboII GAAGA 3 cut(s) 415, 532, 733
MflI RGATCY 1 cut(s) 670
MluCI AATT 8 cut(s) 52, 81, 89, 176, 210, 546, 576, 633
MlyI GAGTC 1 cut(s) 698
MnlI CCTC 4 cut(s) 158, 242, 461, 548
MseI TTAA 2 cut(s) 87, 563
MwoI GCNNNNNNNGC 2 cut(s) 347, 356
NdeII GATC 4 cut(s) 280, 385, 568, 670
NlaIII CATG 1 cut(s) 175
NmuCI GTSAC 4 cut(s) 3, 417, 524, 690
PfeI GAWTC 5 cut(s) 252, 473, 665, 710, 724
PflFI GACNNNGTC 1 cut(s) 165
PkrI GCNGC 3 cut(s) 220, 349, 655
PleI GAGTC 1 cut(s) 697
PpsI GAGTC 1 cut(s) 697
PspPI GGNCC 1 cut(s) 448
PsuI RGATCY 1 cut(s) 670
PsyI GACNNNGTC 1 cut(s) 165
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SalI GTCGAC 1 cut(s) 601
SaqAI TTAA 2 cut(s) 87, 563
SatI GCNGC 3 cut(s) 219, 348, 654
Sau3AI GATC 4 cut(s) 280, 385, 568, 670
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 1 cut(s) 698
SetI ASST 9 cut(s) 30, 110, 160, 169, 312, 419, 442, 481, 531
SfaNI GCATC 1 cut(s) 692
SfcI CTRYAG 1 cut(s) 497
Sse9I AATT 8 cut(s) 52, 81, 89, 176, 210, 546, 576, 633
SsiI CCGC 3 cut(s) 183, 374, 584
SspMI CTAG 1 cut(s) 270
StyI CCWWGG 2 cut(s) 72, 148
TaaI ACNGT 3 cut(s) 557, 642, 703
TaiI ACGT 2 cut(s) 312, 419
TaqI TCGA 1 cut(s) 602
TasI AATT 8 cut(s) 52, 81, 89, 176, 210, 546, 576, 633
TfiI GAWTC 5 cut(s) 252, 473, 665, 710, 724
Tru1I TTAA 2 cut(s) 87, 563
Tru9I TTAA 2 cut(s) 87, 563
TscAI CASTG 4 cut(s) 12, 265, 699, 720
TseFI GTSAC 4 cut(s) 3, 417, 524, 690
TseI GCWGC 3 cut(s) 218, 347, 653
Tsp45I GTSAC 4 cut(s) 3, 417, 524, 690
TspDTI ATGAA 2 cut(s) 21, 29
TspRI CASTG 4 cut(s) 12, 265, 699, 720
Tth111I GACNNNGTC 1 cut(s) 165
XapI RAATTY 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 602
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.