Rmu_sc0001863.1_g000004

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001863.1
OG0007526
Physical Location & Seq
Reverse (-)
8113 .. 10230
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001863.1_g000004.1.cds

Sequence Viewer

Length: 609 bp
ctgctcgagctccttctccgacccgagcctctcgagctccttctccaactcgagcctagatctgggctagaagctcctctgattgctgatgatgtttatgaaatcatcatgaagaatgcggtgtgtttggacagtgagatcatttacgaccgagactttgactacgactactttggtttcaagactcttgagaggtcttacctcttaaaggttcatgggaaggatgatgagagcttgaggaggtggaaggaacaacttcttggggccgtggattttgagagtgttggaggtattaaagttgaaaagatagatataattactgctgcaatggggcacgccttagccgcagaaggaggattctgcactggaagtgctagagttactgatcaccagcgattgagcagttctgggtacgtcttttctgcttctttgcccccatatcttgcgagtactgccattactgccattgatgttcttgaggagaaccctgatctgataacgaagttgaagaaaaacattacgtacgttactatggaaagttctgtgcttgatctcatttttcatgtgcatgtgtgttcctcttggtttgatatcgcacggccagtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

202

Amino Acids

22.61

Weight (kDa)

4.73

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 119, 345
AcoI YGGCCR 1 cut(s) 599
AfaI GTAC 3 cut(s) 413, 451, 524
AfiI CCNNNNNNNGG 2 cut(s) 62, 208
AgsI TTSAA 3 cut(s) 181, 302, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 4 cut(s) 10, 37, 74, 234
AluI AGCT 4 cut(s) 10, 37, 74, 234
Alw21I GWGCWC 2 cut(s) 12, 39
Alw26I GTCTC 1 cut(s) 147
Ama87I CYCGRG 4 cut(s) 5, 23, 32, 50
AoxI GGCC 2 cut(s) 264, 599
ApeKI GCWGC 1 cut(s) 323
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 380
AvaI CYCGRG 4 cut(s) 5, 23, 32, 50
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 2 cut(s) 12, 39
Bbv12I GWGCWC 2 cut(s) 12, 39
BbvI GCAGC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 251
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 3 cut(s) 57, 68, 375
BglII AGATCT 1 cut(s) 59
BisI GCNGC 2 cut(s) 324, 345
BlsI GCNGC 2 cut(s) 325, 346
BmcAI AGTACT 1 cut(s) 451
BmeT110I CYCGRG 4 cut(s) 5, 23, 32, 50
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 340
BpuEI CTTGAG 3 cut(s) 209, 256, 497
BsaAI YACGTR 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 208
Bse1I ACTGG 2 cut(s) 370, 602
Bse3DI GCAATG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 62, 208
BseMI GCAATG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 370, 602
BseRI GAGGAG 3 cut(s) 66, 253, 494
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 2 cut(s) 266, 601
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 2 cut(s) 12, 39
BsiHKCI CYCGRG 4 cut(s) 5, 23, 32, 50
BsiWI CGTACG 1 cut(s) 522
BslI CCNNNNNNNGG 2 cut(s) 62, 208
BsmAI GTCTC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 2 cut(s) 266, 601
BsoBI CYCGRG 4 cut(s) 5, 23, 32, 50
Bsp1286I GDGCHC 3 cut(s) 12, 39, 336
Bsp143I GATC 5 cut(s) 59, 138, 385, 490, 550
BspACI CCGC 2 cut(s) 119, 345
BspANI GGCC 2 cut(s) 266, 601
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 2 cut(s) 370, 602
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 5 cut(s) 59, 138, 385, 490, 550
Bst4CI ACNGT 1 cut(s) 134
BstBAI YACGTR 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 5 cut(s) 62, 141, 388, 493, 553
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 5 cut(s) 59, 138, 385, 490, 550
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 4 cut(s) 34, 344, 452, 461
BstNSI RCATGY 1 cut(s) 572
BstSLI GKGCMC 1 cut(s) 336
BstSNI TACGTA 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 2 cut(s) 266, 601
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 139, 363
Cac8I GCNNGC 1 cut(s) 336
CciI TCATGA 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 264
Csp6I GTAC 3 cut(s) 412, 450, 523
CviAII CATG 4 cut(s) 109, 215, 563, 569
CviQI GTAC 3 cut(s) 412, 450, 523
DdeI CTNAG 1 cut(s) 340
DpnI GATC 5 cut(s) 61, 140, 387, 492, 552
DpnII GATC 5 cut(s) 59, 138, 385, 490, 550
EaeI YGGCCR 1 cut(s) 599
Ecl136II GAGCTC 2 cut(s) 10, 37
Eco105I TACGTA 1 cut(s) 522
Eco24I GRGCYC 2 cut(s) 12, 39
Eco32I GATATC 1 cut(s) 592
Eco53kI GAGCTC 2 cut(s) 10, 37
Eco88I CYCGRG 4 cut(s) 5, 23, 32, 50
EcoICRI GAGCTC 2 cut(s) 10, 37
EcoNI CCTNNNNNAGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 592
EcoT38I GRGCYC 2 cut(s) 12, 39
FaeI CATG 4 cut(s) 112, 218, 566, 572
FaiI YATR 9 cut(s) 99, 110, 216, 314, 439, 533, 564, 570, 607
FatI CATG 4 cut(s) 108, 214, 562, 568
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 324, 345
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 2 cut(s) 12, 39
Fsp4HI GCNGC 2 cut(s) 324, 345
FspBI CTAG 3 cut(s) 57, 68, 375
GluI GCNGC 2 cut(s) 324, 345
HaeIII GGCC 2 cut(s) 266, 601
Hin1II CATG 4 cut(s) 112, 218, 566, 572
HinfI GANTC 2 cut(s) 184, 357
HphI GGTGA 1 cut(s) 380
Hpy188I TCNGA 3 cut(s) 20, 81, 495
Hpy188III TCNNGA 5 cut(s) 32, 109, 181, 188, 476
HpyAV CCTTC 5 cut(s) 23, 50, 214, 241, 344
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 3 cut(s) 414, 521, 525
HpyCH4V TGCA 3 cut(s) 326, 363, 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 344, 452, 461
HpyF3I CTNAG 1 cut(s) 340
HpySE526I ACGT 3 cut(s) 414, 521, 525
Hsp92II CATG 4 cut(s) 112, 218, 566, 572
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 5 cut(s) 59, 138, 385, 490, 550
LmnI GCTCC 3 cut(s) 15, 42, 79
LpnPI CCDG 5 cut(s) 48, 351, 393, 404, 501
Lsp1109I GCAGC 1 cut(s) 310
MaeI CTAG 3 cut(s) 57, 68, 375
MaeII ACGT 3 cut(s) 414, 521, 525
MaeIII GTNAC 2 cut(s) 379, 526
MalI GATC 5 cut(s) 61, 140, 387, 492, 552
MboI GATC 5 cut(s) 59, 138, 385, 490, 550
MboII GAAGA 2 cut(s) 124, 520
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 3 cut(s) 12, 39, 336
MluCI AATT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 3 cut(s) 43, 70, 265
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 206, 294
MslI CAYNNNNRTG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 121
MwoI GCNNNNNNNGC 4 cut(s) 34, 344, 452, 461
NdeII GATC 5 cut(s) 59, 138, 385, 490, 550
NlaIII CATG 4 cut(s) 112, 218, 566, 572
NlaIV GGNNCC 1 cut(s) 265
NspI RCATGY 1 cut(s) 572
PaeR7I CTCGAG 3 cut(s) 5, 32, 50
PagI TCATGA 1 cut(s) 108
PctI GAATGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 357
Pfl23II CGTACG 1 cut(s) 522
PkrI GCNGC 2 cut(s) 325, 346
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 522
Psp124BI GAGCTC 2 cut(s) 12, 39
PspLI CGTACG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 264
PspXI VCTCGAGB 2 cut(s) 5, 50
PsuI RGATCY 1 cut(s) 59
RsaI GTAC 3 cut(s) 413, 451, 524
RsaNI GTAC 3 cut(s) 412, 450, 523
RseI CAYNNNNRTG 1 cut(s) 567
SacI GAGCTC 2 cut(s) 12, 39
SaqAI TTAA 2 cut(s) 206, 294
SatI GCNGC 2 cut(s) 324, 345
Sau3AI GATC 5 cut(s) 59, 138, 385, 490, 550
Sau96I GGNCC 1 cut(s) 264
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 1 cut(s) 178
SduI GDGCHC 3 cut(s) 12, 39, 336
Sfr274I CTCGAG 3 cut(s) 5, 32, 50
SlaI CTCGAG 3 cut(s) 5, 32, 50
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 6 cut(s) 5, 32, 50, 188, 235, 476
SmoI CTYRAG 6 cut(s) 5, 32, 50, 188, 235, 476
SnaBI TACGTA 1 cut(s) 522
Sse9I AATT 1 cut(s) 315
SsiI CCGC 2 cut(s) 119, 345
SspMI CTAG 3 cut(s) 57, 68, 375
SstI GAGCTC 2 cut(s) 12, 39
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 3 cut(s) 417, 524, 528
TaqI TCGA 3 cut(s) 6, 33, 51
TaqII GACCGA 1 cut(s) 165
TasI AATT 1 cut(s) 315
TatI WGTACW 1 cut(s) 449
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 1 cut(s) 357
Tru1I TTAA 2 cut(s) 206, 294
Tru9I TTAA 2 cut(s) 206, 294
TscAI CASTG 2 cut(s) 139, 370
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 4 cut(s) 114, 125, 203, 551
TspRI CASTG 2 cut(s) 139, 370
XagI CCTNNNNNAGG 1 cut(s) 206
XceI RCATGY 1 cut(s) 572
XhoI CTCGAG 3 cut(s) 5, 32, 50
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 57, 68, 375
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.