RchiOBHm_Chr7g0217781

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007526
Physical Location & Seq
Forward (+)
35710734 .. 35712087
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19491

Sequence Viewer

Length: 495 bp
ATGGGACACGCCTTAGCCACAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCACCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGAGATTACTGCCATTGATGTTCTTGCGGAGAACCCTGATCTGATAACGAAGTTGAAGAAAAACATTACGTTACTATGGAAAGGATTGTCAGGTGTAATGGGCCTCTCATTAGCAAGCAATCCAGAATCACCTATTGTGTTTCTCAAACTACAGAAGTCAACAAGTTCTGTGAAGAGTGACCTGCAACTCCTCAACGAAATTGCTGACTGTTTGTTAAAGGATCATTCAATTCTTGCGGTGGCGTCCAAAAGGTCGACACTTGATAAATGTCGTTTGCCCGTGGGAATTAGACTGTTTGTTTCTGCTGCCCATTCCGAATCAGATCTGCTGAAGGCATCAGAGTCACTGAAAACGGTTGCAGAATCAGTTCTGAAGAATCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

164

Amino Acids

17.79

Weight (kDa)

8.29

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 362
AciI CCGC 2 cut(s) 134, 344
AclWI GGATC 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 350
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 2 cut(s) 163, 336
AlwI GGATC 1 cut(s) 336
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 53, 228
BbvI GCAGC 1 cut(s) 400
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BclI TGATCA 1 cut(s) 58
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 297
BglII AGATCT 1 cut(s) 430
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 208
BmsI GCATC 1 cut(s) 452
Bpu10I CCTNAGC 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 43, 64
BseDI CCNNGG 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 43, 64
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 400
BsgI GTGCAG 1 cut(s) 19
BshFI GGCC 1 cut(s) 210
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 210
Bsp143I GATC 4 cut(s) 58, 145, 328, 430
BspACI CCGC 2 cut(s) 134, 344
BspANI GGCC 1 cut(s) 210
BspMI ACCTGC 1 cut(s) 297
BspPI GGATC 1 cut(s) 336
BsrI ACTGG 2 cut(s) 43, 64
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 4 cut(s) 58, 145, 328, 430
BssNI GRCGYC 1 cut(s) 350
Bst4CI ACNGT 3 cut(s) 317, 402, 463
Bst6I CTCTTC 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 13
BstDSI CCRYGG 1 cut(s) 387
BstKTI GATC 4 cut(s) 61, 148, 331, 433
BstMBI GATC 4 cut(s) 58, 145, 328, 430
BstSFI CTRYAG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 400
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 36, 452
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 339
Csp6I GTAC 1 cut(s) 74
CviJI RGCY 2 cut(s) 17, 210
CviKI_1 RGCY 2 cut(s) 17, 210
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 13
DpnI GATC 4 cut(s) 60, 147, 330, 432
DpnII GATC 4 cut(s) 58, 145, 328, 430
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 458
FaiI YATR 5 cut(s) 101, 184, 489, 491, 493
FaqI GGGAC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 58
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 1 cut(s) 414
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 414
HaeIII GGCC 1 cut(s) 210
HgaI GACGC 1 cut(s) 339
Hin1I GRCGYC 1 cut(s) 350
HincII GTYRAC 2 cut(s) 267, 363
HindII GTYRAC 2 cut(s) 267, 363
HinfI GANTC 6 cut(s) 30, 233, 425, 449, 470, 484
HphI GGTGA 2 cut(s) 53, 228
Hpy166II GTNNAC 2 cut(s) 267, 363
Hpy188I TCNGA 5 cut(s) 150, 424, 430, 448, 480
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 267, 363
HpyAV CCTTC 2 cut(s) 17, 433
HpyCH4III ACNGT 3 cut(s) 317, 402, 463
HpyCH4IV ACGT 2 cut(s) 76, 176
HpyCH4V TGCA 3 cut(s) 36, 292, 467
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 2 cut(s) 76, 176
Hsp92I GRCGYC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 4 cut(s) 58, 145, 328, 430
LpnPI CCDG 7 cut(s) 24, 55, 77, 156, 183, 243, 302
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 1 cut(s) 452
MaeI CTAG 1 cut(s) 48
MaeII ACGT 2 cut(s) 76, 176
MaeIII GTNAC 4 cut(s) 52, 177, 284, 450
MalI GATC 4 cut(s) 60, 147, 330, 432
MboI GATC 4 cut(s) 58, 145, 328, 430
MboII GAAGA 3 cut(s) 175, 292, 493
MflI RGATCY 1 cut(s) 430
MluCI AATT 3 cut(s) 306, 336, 393
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 3 cut(s) 20, 221, 308
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 1 cut(s) 323
NdeII GATC 4 cut(s) 58, 145, 328, 430
NmuCI GTSAC 2 cut(s) 284, 450
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 5 cut(s) 30, 233, 425, 470, 484
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SalI GTCGAC 1 cut(s) 361
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 4 cut(s) 58, 145, 328, 430
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 458
SetI ASST 6 cut(s) 79, 179, 202, 241, 291, 362
SfaNI GCATC 1 cut(s) 452
SfcI CTRYAG 1 cut(s) 257
Sse9I AATT 3 cut(s) 306, 336, 393
SsiI CCGC 2 cut(s) 134, 344
SspMI CTAG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 317, 402, 463
TaiI ACGT 2 cut(s) 79, 179
TaqI TCGA 1 cut(s) 362
TasI AATT 3 cut(s) 306, 336, 393
TfiI GAWTC 5 cut(s) 30, 233, 425, 470, 484
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 2 cut(s) 43, 459
TseFI GTSAC 2 cut(s) 284, 450
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 2 cut(s) 284, 450
TspRI CASTG 2 cut(s) 43, 459
XmiI GTMKAC 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.