Rh5BG392500

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007526
Physical Location & Seq
Forward (+)
62950344 .. 62968729
18386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG392500.1

Sequence Viewer

Length: 444 bp
ATGAGAAGTTGCTTGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTCATCTTTCTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTCTGGAGGAAATCACTCTGAAGAATAAGCGGGCTAAGAAACTCCGGCGCTATATTGTGGTTGAAGCTGTGTACCAGAATTCTGGCCAAATAGCCCTCTTGGGCAAAATTGTTAAATTGAAGGAGAAATATAGGTTTCTTGTTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAAAGCTGGACGAGGTCTCATGGAATTTTGCGGGGTTCTGGTTGAAAAGATAGATATAATTACTGCTGCAATGGGACACGCCTTAGCCGCAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCCCCAGTTTGTCTATCTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

147

Amino Acids

16.43

Weight (kDa)

9.01

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 8 - 139 3.9e-09 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 142, 321, 378
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 190, 314
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 4 cut(s) 82, 176, 232, 335
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 2 cut(s) 179, 296
AluI AGCT 2 cut(s) 179, 296
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 1 cut(s) 413
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 2 cut(s) 190, 314
AspLEI GCGC 1 cut(s) 162
BalI TGGCCA 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 60, 408
BfoI RGCGCY 1 cut(s) 163
BisI GCNGC 2 cut(s) 357, 378
BlsI GCNGC 2 cut(s) 358, 379
BmrI ACTGGG 1 cut(s) 418
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 403, 424
Bse3DI GCAATG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 403, 424
BseXI GCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 379
BshFI GGCC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 1 cut(s) 198
Bso31I GGTCTC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 418
BspACI CCGC 3 cut(s) 142, 321, 378
BspANI GGCC 1 cut(s) 198
BspPI GGATC 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 2 cut(s) 403, 424
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 147, 373
BstF5I GGATG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 144
CfoI GCGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 94, 310
CviJI RGCY 6 cut(s) 146, 179, 198, 206, 296, 377
CviKI_1 RGCY 6 cut(s) 146, 179, 198, 206, 296, 377
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 147, 373
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 97, 313
FaiI YATR 6 cut(s) 87, 95, 165, 243, 311, 347
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 93, 309
FauI CCCGC 2 cut(s) 135, 314
Fnu4HI GCNGC 2 cut(s) 357, 378
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 357, 378
FspBI CTAG 2 cut(s) 60, 408
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 357, 378
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 157
HhaI GCGC 1 cut(s) 162
Hin1II CATG 2 cut(s) 97, 313
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 3 cut(s) 24, 98, 390
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 3 cut(s) 60, 116, 437
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 3 cut(s) 14, 226, 377
HpyCH4V TGCA 2 cut(s) 359, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 2 cut(s) 147, 373
Hsp92II CATG 2 cut(s) 97, 313
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 1 cut(s) 418
LpnPI CCDG 8 cut(s) 101, 170, 180, 200, 282, 314, 384, 437
Lsp1109I GCAGC 1 cut(s) 343
MaeI CTAG 2 cut(s) 60, 408
MaeIII GTNAC 1 cut(s) 412
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 2 cut(s) 41, 145
MfeI CAATTG 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 6 cut(s) 69, 190, 219, 227, 314, 348
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 4 cut(s) 112, 218, 296, 380
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 2 cut(s) 104, 225
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 1 cut(s) 418
NlaIII CATG 2 cut(s) 97, 313
OliI CACNNNNGTG 1 cut(s) 71
PfeI GAWTC 2 cut(s) 98, 390
PflFI GACNNNGTC 1 cut(s) 303
PkrI GCNGC 2 cut(s) 358, 379
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PsyI GACNNNGTC 1 cut(s) 303
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 104, 225
SatI GCNGC 2 cut(s) 357, 378
Sau3AI GATC 1 cut(s) 418
SchI GAGTC 1 cut(s) 33
SetI ASST 4 cut(s) 181, 248, 298, 307
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 6 cut(s) 69, 190, 219, 227, 314, 348
SsiI CCGC 3 cut(s) 142, 321, 378
SspMI CTAG 2 cut(s) 60, 408
StyI CCWWGG 1 cut(s) 286
TaqI TCGA 1 cut(s) 438
TasI AATT 6 cut(s) 69, 190, 219, 227, 314, 348
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 2 cut(s) 98, 390
Tru1I TTAA 2 cut(s) 104, 225
Tru9I TTAA 2 cut(s) 104, 225
TscAI CASTG 1 cut(s) 403
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 33, 41
TspRI CASTG 1 cut(s) 403
Tth111I GACNNNGTC 1 cut(s) 303
XapI RAATTY 2 cut(s) 190, 314
XbaI TCTAGA 1 cut(s) 59
XspI CTAG 2 cut(s) 60, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.