Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007526

Physical Location & Seq

Genomic Coordinates Reverse (-)

65426906 .. 65433969

Gene Structure 7064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATAGGACAAGTGGAGTGCGCTCTTGTTGTCATGAAAATAATATTAGAGAAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTTTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAACCCTGATCTGATAACGAAGTTGAAGAAAAACATTACGTTACTATGTAAAGGATTGTCAGATAGAACACTATGGATGCATGGTGGATATGCTATGCCGGGCCGGACATGTCAAAGAGGCATTGGAGTTAATTCGGAAAATGCCTATTCATCCAAATGCAATAGTTTTGCGAACCCTGATGGCCATGCGCATGGAGAGCTCAAGCTTGGAGAGAGCATCACCAAAGAGTTAATCAGGGCTGACCCTATGCATGAGTCGAACTATGTCCTGCTTTCCAACATCTATGCAAAAGTGAACCATTGGGAGAAGAAAACCAAGACTACAGAGGCGATGGACAAGAAAGGGGTGAAAAAGACCCCTGGGAGCACTATGATTGAGCTAGAGAATGAAATTTACGAATTTGTGGCAGGAGATAAATCGCATAAACTGTCCAAAGAGATTTATGAAATGGTTGATAAAATGGGGAGGAAGATAAAGAGGGCTGGATATGTTCCCACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

230

Amino Acids

25.34

Weight (kDa)

8.83

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	126 - 188	1.5e-12	E motif
Eplus_motif	PF20430	193 - 219	3.1e-07	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01910
malus_domestica	MD02G1254800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0385711 RchiOBHm_Chr4g0392541 RchiOBHm_Chr7g0217771 RchiOBHm_Chr7g0217781 RchiOBHm_Chr7g0225391
rosa_laevigata	RLG00000009613 RLG00000015392 RLG00000030410 RLG00000036877
rosa_multiflora	Rmu_sc0001863.1_g000004 Rmu_sc0006711.1_g000026 Rmu_sc0011203.1_g000021
rosa_roxburghii	Rroxscaffold_7G00203840
rosa_samantha	Rh4AG311200 Rh4BG318300 Rh4CG333600 Rh5BG392500 Rh6CG013300 Rh6DG014500 Rh7AG312400
rosa_wichuraiana	Rw0G020880 Rw7G026460 Rw7G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	576, 584
AfaI	GTAC	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	3 cut(s)	385, 391, 565
AluI	AGCT	3 cut(s)	385, 391, 565
Alw21I	GWGCWC	2 cut(s)	387, 554
AoxI	GGCC	2 cut(s)	286, 367
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	2 cut(s)	576, 584
AspLEI	GCGC	2 cut(s)	23, 376
AspS9I	GGNCC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	83, 397, 544
BalI	TGGCCA	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	387, 554
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	359, 511
BciT130I	CCWGG	1 cut(s)	546
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	285
BfaI	CTAG	2 cut(s)	78, 566
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	285, 546
BmgT120I	GGNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	285, 546
BmsI	GCATC	2 cut(s)	252, 411
BpuEI	CTTGAG	2 cut(s)	200, 371
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	544, 545
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	544, 545
BseGI	GGATG	2 cut(s)	267, 335
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	288, 369
BsiHKAI	GWGCWC	2 cut(s)	387, 554
BsiSI	CCGG	2 cut(s)	284, 289
BsnI	GGCC	2 cut(s)	288, 369
Bsp1286I	GDGCHC	2 cut(s)	387, 554
Bsp143I	GATC	2 cut(s)	88, 193
BspANI	GGCC	2 cut(s)	288, 369
BspHI	TCATGA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	544, 545
BssMI	GATC	2 cut(s)	88, 193
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	615
BstF5I	GGATG	2 cut(s)	267, 335
BstHHI	GCGC	2 cut(s)	23, 376
BstKTI	GATC	2 cut(s)	91, 196
BstMBI	GATC	2 cut(s)	88, 193
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 164, 382
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	283, 544
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	288, 369
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	267, 335
BtsIMutI	CAGTG	1 cut(s)	66
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	2 cut(s)	23, 376
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	6 cut(s)	34, 266, 294, 371, 377, 437
CviJI	RGCY	7 cut(s)	288, 369, 385, 391, 425, 565, 668
CviKI_1	RGCY	7 cut(s)	288, 369, 385, 391, 425, 565, 668
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	2 cut(s)	90, 195
DpnII	GATC	2 cut(s)	88, 193
EaeI	YGGCCR	1 cut(s)	367
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	544
EcoT22I	ATGCAT	2 cut(s)	267, 438
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	6 cut(s)	37, 269, 297, 374, 380, 440
FatI	CATG	6 cut(s)	33, 265, 293, 370, 376, 436
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	2 cut(s)	274, 322
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	156
FspAI	RTGCGCAY	1 cut(s)	375
FspBI	CTAG	2 cut(s)	78, 566
FspI	TGCGCA	1 cut(s)	375
GlaI	GCGC	2 cut(s)	22, 375
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	288, 369
HapII	CCGG	2 cut(s)	284, 289
HhaI	GCGC	2 cut(s)	23, 376
Hin1II	CATG	6 cut(s)	37, 269, 297, 374, 380, 440
Hin6I	GCGC	2 cut(s)	21, 374
HinP1I	GCGC	2 cut(s)	21, 374
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	2 cut(s)	60, 440
HpaII	CCGG	2 cut(s)	284, 289
HphI	GGTGA	3 cut(s)	83, 397, 544
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	198, 247, 322
Hpy188III	TCNNGA	2 cut(s)	34, 179
Hpy8I	GTNNAC	1 cut(s)	481
HpyCH4III	ACNGT	1 cut(s)	615
HpyCH4IV	ACGT	2 cut(s)	117, 224
HpyCH4V	TGCA	5 cut(s)	66, 265, 345, 436, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 164, 382
HpySE526I	ACGT	2 cut(s)	117, 224
Hsp92II	CATG	6 cut(s)	37, 269, 297, 374, 380, 440
HspAI	GCGC	2 cut(s)	21, 374
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 193
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	2 cut(s)	252, 411
MaeI	CTAG	2 cut(s)	78, 566
MaeII	ACGT	2 cut(s)	117, 224
MaeIII	GTNAC	2 cut(s)	82, 225
MalI	GATC	2 cut(s)	90, 195
MboI	GATC	2 cut(s)	88, 193
MboII	GAAGA	3 cut(s)	223, 505, 667
MhlI	GDGCHC	2 cut(s)	387, 554
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	3 cut(s)	316, 576, 584
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	6 cut(s)	50, 175, 296, 505, 645, 657
Mox20I	TGGCCA	1 cut(s)	369
Mph1103I	ATGCAT	2 cut(s)	267, 438
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	2 cut(s)	315, 416
MslI	CAYNNNNRTG	2 cut(s)	340, 375
Msp20I	TGGCCA	1 cut(s)	369
MspI	CCGG	2 cut(s)	284, 289
MspR9I	CCNGG	2 cut(s)	285, 546
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	3 cut(s)	155, 164, 382
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	88, 193
NlaIII	CATG	6 cut(s)	37, 269, 297, 374, 380, 440
NsbI	TGCGCA	1 cut(s)	375
NsiI	ATGCAT	2 cut(s)	267, 438
NspI	RCATGY	1 cut(s)	297
PagI	TCATGA	1 cut(s)	33
PasI	CCCWGGG	1 cut(s)	545
PciI	ACATGT	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PscI	ACATGT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	340, 375
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	315, 416
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	88, 193
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	285, 546
SduI	GDGCHC	2 cut(s)	387, 554
SetI	ASST	5 cut(s)	120, 227, 387, 393, 567
SfaNI	GCATC	2 cut(s)	252, 411
SfcI	CTRYAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	2 cut(s)	340, 375
SmlI	CTYRAG	2 cut(s)	179, 386
SmoI	CTYRAG	2 cut(s)	179, 386
Sse9I	AATT	3 cut(s)	316, 576, 584
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	2 cut(s)	78, 566
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	283, 544
TaaI	ACNGT	1 cut(s)	615
TaiI	ACGT	2 cut(s)	120, 227
TaqI	TCGA	1 cut(s)	443
TasI	AATT	3 cut(s)	316, 576, 584
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	315, 416
Tru9I	TTAA	2 cut(s)	315, 416
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	4 cut(s)	50, 324, 588, 645
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	576, 584
XceI	RCATGY	1 cut(s)	297
XspI	CTAG	2 cut(s)	78, 566
Zsp2I	ATGCAT	2 cut(s)	267, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.