Rmu_sc0011203.1_g000021

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011203.1
OG0007526
Physical Location & Seq
Reverse (-)
61874 .. 62486
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011203.1_g000021.1.cds

Sequence Viewer

Length: 285 bp
atgggacacgccttagccgcagaaggaggattctgcactggaagtgctagagttactgatcaccagcgattgagcagttctgggtacgtcttttctgcttctttgccgccatatcttgcgagtgctgccattactgccattgatgttcttgaggagaaccctgatctgataacgaagttgaagaaaaacattatgtacgttactatggaaagattgtcaggtgtaatgggggttgcttatattcaagaagttgggaaagccagcctcttttttgagttaggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

94

Amino Acids

10.01

Weight (kDa)

5.53

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 107
AfaI GTAC 2 cut(s) 86, 197
AgsI TTSAA 2 cut(s) 181, 245
ApeKI GCWGC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 53
BbvI GCAGC 1 cut(s) 112
BclI TGATCA 1 cut(s) 58
BfaI CTAG 2 cut(s) 48, 283
BisI GCNGC 3 cut(s) 18, 107, 126
BlsI GCNGC 3 cut(s) 19, 108, 127
Bpu10I CCTNAGC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 19
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 58, 163
BspACI CCGC 2 cut(s) 18, 107
BsrI ACTGG 1 cut(s) 43
BssMI GATC 2 cut(s) 58, 163
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 13
BstKTI GATC 2 cut(s) 61, 166
BstMBI GATC 2 cut(s) 58, 163
BstMWI GCNNNNNNNGC 3 cut(s) 17, 125, 134
BstV1I GCAGC 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 85, 196
CviJI RGCY 4 cut(s) 17, 260, 264, 282
CviKI_1 RGCY 4 cut(s) 17, 260, 264, 282
CviQI GTAC 2 cut(s) 85, 196
DdeI CTNAG 1 cut(s) 13
DpnI GATC 2 cut(s) 60, 165
DpnII GATC 2 cut(s) 58, 163
FaiI YATR 4 cut(s) 112, 194, 206, 240
FaqI GGGAC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 3 cut(s) 18, 107, 126
Fsp4HI GCNGC 3 cut(s) 18, 107, 126
FspBI CTAG 2 cut(s) 48, 283
GluI GCNGC 3 cut(s) 18, 107, 126
HinfI GANTC 1 cut(s) 30
HphI GGTGA 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 149, 245
HpyAV CCTTC 1 cut(s) 17
HpyCH4IV ACGT 2 cut(s) 87, 198
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 125, 134
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 2 cut(s) 87, 198
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 163
LpnPI CCDG 6 cut(s) 24, 66, 77, 174, 204, 274
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 2 cut(s) 48, 283
MaeII ACGT 2 cut(s) 87, 198
MaeIII GTNAC 2 cut(s) 52, 199
MalI GATC 2 cut(s) 60, 165
MboI GATC 2 cut(s) 58, 163
MboII GAAGA 1 cut(s) 193
MnlI CCTC 3 cut(s) 20, 145, 275
MwoI GCNNNNNNNGC 3 cut(s) 17, 125, 134
NdeII GATC 2 cut(s) 58, 163
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 3 cut(s) 19, 108, 127
RsaI GTAC 2 cut(s) 86, 197
RsaNI GTAC 2 cut(s) 85, 196
SatI GCNGC 3 cut(s) 18, 107, 126
Sau3AI GATC 2 cut(s) 58, 163
SetI ASST 3 cut(s) 90, 201, 223
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SsiI CCGC 2 cut(s) 18, 107
SspMI CTAG 2 cut(s) 48, 283
TaiI ACGT 2 cut(s) 90, 201
TauI GCSGC 2 cut(s) 20, 109
TfiI GAWTC 1 cut(s) 30
TscAI CASTG 1 cut(s) 43
TseI GCWGC 1 cut(s) 125
TspRI CASTG 1 cut(s) 43
XspI CTAG 2 cut(s) 48, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.