RchiOBHm_Chr7g0217771

Long chain base biosynthesis protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007526
Physical Location & Seq
Forward (+)
35709801 .. 35710732
932 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19490

Sequence Viewer

Length: 240 bp
ATGGAATCATTAAGGAATACTCTGGAGGAAATCACTCTGAAGAATAAGCGGGCTAAGAAACTCCGGCGCTATATTGTGGTTGAAGCTGTGTACCAGAATTCTGGCCAAATAGCCCCCTTGGGCGAAATTGTTAAATTGAAGGAGAAATATAGGTTTCGTGTTTTATTAGATTCTCAACTCATTTGGTGTCCTTGGAAAAGCTGGACGAGGTCTCACGGAATTTTGCGGGGTTCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

79

Amino Acids

9.3

Weight (kDa)

10.23

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 226
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 2 cut(s) 97, 219
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 2 cut(s) 83, 139
AluBI AGCT 2 cut(s) 86, 201
AluI AGCT 2 cut(s) 86, 201
Alw26I GTCTC 1 cut(s) 216
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 97, 219
AspLEI GCGC 1 cut(s) 69
BalI TGGCCA 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 117, 191
BseDI CCNNGG 2 cut(s) 117, 191
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 216
BsnI GGCC 1 cut(s) 105
Bso31I GGTCTC 1 cut(s) 216
BspACI CCGC 2 cut(s) 49, 226
BspANI GGCC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 216
BssECI CCNNGG 2 cut(s) 117, 191
BssT1I CCWWGG 2 cut(s) 117, 191
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 101
BsuRI GGCC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 91
CviJI RGCY 5 cut(s) 53, 86, 105, 113, 201
CviKI_1 RGCY 5 cut(s) 53, 86, 105, 113, 201
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 117, 191
Eco31I GGTCTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 117, 191
ErhI CCWWGG 2 cut(s) 117, 191
FaiI YATR 2 cut(s) 72, 150
FauI CCCGC 2 cut(s) 42, 219
GlaI GCGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 64
HhaI GCGC 1 cut(s) 69
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 2 cut(s) 5, 170
HpaII CCGG 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 54
HspAI GCGC 1 cut(s) 67
LpnPI CCDG 6 cut(s) 8, 77, 87, 107, 187, 219
MboII GAAGA 1 cut(s) 52
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 4 cut(s) 97, 126, 134, 219
MluNI TGGCCA 1 cut(s) 105
MnlI CCTC 2 cut(s) 19, 201
Mox20I TGGCCA 1 cut(s) 105
MscI TGGCCA 1 cut(s) 105
MseI TTAA 2 cut(s) 11, 132
Msp20I TGGCCA 1 cut(s) 105
MspI CCGG 1 cut(s) 64
PfeI GAWTC 2 cut(s) 5, 170
PflFI GACNNNGTC 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 208
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 11, 132
SetI ASST 4 cut(s) 88, 155, 203, 212
Sse9I AATT 4 cut(s) 97, 126, 134, 219
SsiI CCGC 2 cut(s) 49, 226
StyI CCWWGG 2 cut(s) 117, 191
TasI AATT 4 cut(s) 97, 126, 134, 219
TfiI GAWTC 2 cut(s) 5, 170
Tru1I TTAA 2 cut(s) 11, 132
Tru9I TTAA 2 cut(s) 11, 132
TspGWI ACGGA 1 cut(s) 231
Tth111I GACNNNGTC 1 cut(s) 208
XapI RAATTY 2 cut(s) 97, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.