Rh4AG311200

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0007526
Physical Location & Seq
Forward (+)
62218948 .. 62219474
527 bp
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UTR
Exon/CDS
Intron
Rh4AG311200.1

Sequence Viewer

Length: 381 bp
ATGCTTGGAATACAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTACTTCTTTGCCCCCATATCTTGCGAGTGCTACCATTACTGTCATTGATGTTCTTGAGGAGAACCCTGATCTGATAACGAAGTTGAAGAAAAACATTACGTTACTATGTAAAGGTCTGTGCTTGATCTCATTTTTCATGTGCATGTGTGTTTCTCTTGGTTTTATATCCCACGGCCAGTATAGTCATCACTTGATTAGTAGTGTCTTAGCAGTCGCTTATCACATGCCTTGTGCTGGCATCCTCTTGATTGAGTATTGTGCTGTGATGTGCAGGATTGTCAGGTGTAATGGGGGTTGCTTATATTCAAGAAGTTGGGAAAGCCAGCCTCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

126

Amino Acids

13.92

Weight (kDa)

8.09

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 217
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 130, 351
AoxI GGCC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 232
BmsI GCATC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 334
BshFI GGCC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 278
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 112, 168
BspANI GGCC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 2 cut(s) 112, 168
Bst4CI ACNGT 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 280, 368
BstDEI CTNAG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 2 cut(s) 115, 171
BstMBI GATC 2 cut(s) 112, 168
BstNSI RCATGY 2 cut(s) 190, 271
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 280, 368
Csp6I GTAC 1 cut(s) 34
CviAII CATG 3 cut(s) 181, 187, 268
CviJI RGCY 3 cut(s) 219, 366, 370
CviKI_1 RGCY 3 cut(s) 219, 366, 370
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 250
DpnI GATC 2 cut(s) 114, 170
DpnII GATC 2 cut(s) 112, 168
EaeI YGGCCR 1 cut(s) 217
FaeI CATG 3 cut(s) 184, 190, 271
FaiI YATR 8 cut(s) 61, 151, 182, 188, 209, 225, 269, 346
FatI CATG 3 cut(s) 180, 186, 267
FokI GGATG 1 cut(s) 269
HaeIII GGCC 1 cut(s) 219
Hin1II CATG 3 cut(s) 184, 190, 271
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 3 cut(s) 98, 289, 351
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 36, 143
HpyCH4V TGCA 2 cut(s) 186, 315
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 2 cut(s) 36, 143
Hsp92II CATG 3 cut(s) 184, 190, 271
Kzo9I GATC 2 cut(s) 112, 168
LpnPI CCDG 6 cut(s) 15, 123, 233, 264, 301, 310
LweI GCATC 1 cut(s) 291
MaeII ACGT 2 cut(s) 36, 143
MaeIII GTNAC 1 cut(s) 144
MalI GATC 2 cut(s) 114, 170
MboI GATC 2 cut(s) 112, 168
MboII GAAGA 1 cut(s) 142
MnlI CCTC 3 cut(s) 94, 296, 381
MslI CAYNNNNRTG 1 cut(s) 185
NdeII GATC 2 cut(s) 112, 168
NlaIII CATG 3 cut(s) 184, 190, 271
NspI RCATGY 2 cut(s) 190, 271
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 185
Sau3AI GATC 2 cut(s) 112, 168
SetI ASST 4 cut(s) 39, 146, 160, 329
SfaNI GCATC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 39, 146
TspDTI ATGAA 1 cut(s) 169
XceI RCATGY 2 cut(s) 190, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.